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[178.251.70.207]) by smtp.gmail.com with ESMTPSA id z2sm1887801wma.45.2021.09.04.05.39.41 for (version=TLS1_3 cipher=TLS_AES_256_GCM_SHA384 bits=256/256); Sat, 04 Sep 2021 05:39:41 -0700 (PDT) User-agent: mu4e 1.6.5; emacs 27.2 From: Dominik Schrempf To: emacs-orgmode@gnu.org Subject: Org babel source blocks ignore buffer-local variables Date: Sat, 04 Sep 2021 14:30:08 +0200 Message-ID: <87fsukms4z.fsf@gmail.com> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=2a00:1450:4864:20::435; envelope-from=dominik.schrempf@gmail.com; helo=mail-wr1-x435.google.com X-Spam_score_int: -18 X-Spam_score: -1.9 X-Spam_bar: - X-Spam_report: (-1.9 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, FREEMAIL_FROM=0.001, PDS_BTC_ID=0.164, RCVD_IN_DNSWL_NONE=-0.0001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: emacs-orgmode@gnu.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: "Emacs-orgmode" X-Migadu-Flow: FLOW_IN ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1630759227; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:list-id:list-help: list-unsubscribe:list-subscribe:list-post:dkim-signature; bh=jaBafQ8Y2fyyWpZNmGd1R6uuKjWr4IVBsZQBCYFwKDE=; b=dNUTt14hgFRX4XraYIpsX/h6YlrnnWXs0yN6IorkTBzfftQVFhXCdUasXABE/tdGhxROSN RVzRkWGshsTH7qIIFQx/4W+h639aAguVQWVnwLxuKiaF4aRfvMkka6CZvmNOBzlh8JU48I LSaK5pjsqM7PVtLAxM50ozjvVVTtMDyN7bELWSUSSC3xhUHSugBuDxwa3B0QTxYfuAo3HW 7hrm0f0z/9mHbZFDccXK54B4jE/ryMpEdRnznjrVGW3kvGGHQaATbUxsm1BlGiOFUSILzF qFhf5/RuWmfY8xtGATcyD+VWhW8R4IgS2wOMKa9V/YnmMCQ6QgoXI8TeTGcSLw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1630759227; a=rsa-sha256; cv=none; b=eX5mUI0lK6cj/f61rAD92Bqcuca5/pfDE4yqfx1yusIk/2QYITriCcCA4hy2fOTwEwurYj 2AYSPh6ZUFjPueUno5PThKpf3BfTH9HjMiNy/bFXndPL1lGswwP3stXvJ6VPuX1Jzf10ye a0gEiEIwHi765c4NgIjSyZaQpw8GKLsSZeyHbyBHfXqp/ZDNTOA4YEq3KmSnvwmc1m83gB zDQEuNFxOENvHaddMcmW/LqdxI2FGUNmfbcD4tDc/qzYYRJ6r0EazaMWQFUt0jMFKGweIv ym7+cDMxztIIaB5yMnDBDhGpyLMsl9fQh9Swt+1FXITJfyXO+RUZnECKHQrhuQ== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20210112 header.b=fUn4mRby; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of emacs-orgmode-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=emacs-orgmode-bounces@gnu.org X-Migadu-Spam-Score: -1.62 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=gmail.com header.s=20210112 header.b=fUn4mRby; dmarc=pass (policy=none) header.from=gmail.com; spf=pass (aspmx1.migadu.com: domain of emacs-orgmode-bounces@gnu.org designates 209.51.188.17 as permitted sender) smtp.mailfrom=emacs-orgmode-bounces@gnu.org X-Migadu-Queue-Id: 8176A124CE X-Spam-Score: -1.62 X-Migadu-Scanner: scn1.migadu.com X-TUID: ZqGVRZqP5bcN Hello, I use directory local environments with =3Denvrc=3D [1], and run into troub= le when using (Bash) Org Babel source code blocks. The buffer local environment see= ms to be ignored (see the example at the bottom). This seems to have been discussed in the course of a GitHub issue of =3Dinheritenv=3D [2], which is pulled in by =3Denvrc=3D. Also, on this mail= ing list, there was a short discussion [3]. Do you have any thoughts on this? Is there an easy way to make Org Babel so= urce blocks honor buffer local setups? Thank you! Dominik #+name: Scratch #+begin_src sh :exports both :results output verbatim function path () { echo "$PATH" | tr ':' '\n'; } path #+end_src #+RESULTS: Scratch #+begin_example /home/dominik/Evolutionary-Biology/Scripts/nix-flakes /home/dominik/Evolutionary-Biology/Scripts /home/dominik/bin/nix-flakes /home/dominik/bin /run/wrappers/bin /home/dominik/.nix-profile/bin /etc/profiles/per-user/dominik/bin /nix/var/nix/profiles/default/bin /run/current-system/sw/bin /nix/store/3l9lddwxz1mayaxvw8iy50ygzzfh1s1b-emacs-27.2/libexec/emacs/27.2/x= 86_64-pc-linux-gnu #+end_example The Emacs =3Dexec-path=3D variable has the following value: #+begin_quote exec-path is a variable defined in =E2=80=98C source code=E2=80=99. Its value is ("/nix/store/cnxncxyghj3gfpfvng6z4l8k4hfl48wq-ghc-8.10.6-with-packages/bin/= " "/nix/store/435paza0j48aa9vgvf6r2l12nrg4ld11-patchelf-0.12/bin/" "/nix/st= ore/4xs1xyj8728yvh9y5v6ji819kwgfy2fv-gcc-wrapper-10.3.0/bin/" "/nix/store/d= lni53myj53kx20pi4yhm7p68lw17b07-gcc-10.3.0/bin/" "/nix/store/6z35qvn00xrjva= znv9kfy8xddbbdz4gl-glibc-2.33-47-bin/bin/" "/nix/store/1570w56jrkvr90w9x158= vyb5vahnk18v-coreutils-8.32/bin/" "/nix/store/29bjq5hw1qglybp1a5f3ij9gxc2fy= f94-binutils-wrapper-2.35.1/bin/" "/nix/store/v8imx1nvyz0hgvx9cbcmh6gp4ngw3= ffj-binutils-2.35.1/bin/" "/nix/store/iz7bgfvjmwdz3vgmzryhfkqwbn8zr2jn-ncur= ses-6.2/bin/" "/nix/store/w07a7k61dw5gnsyxj3kgcq3shr76jax8-bash-interactive= -4.4-p23/bin/" "/nix/store/xhxll8hx0x9szhlvvd8h1c35glszlj34-cabal-install-3= .4.0.0/bin/" "/nix/store/gbxdjp9z1bjx1zl6icckw093yv0vn21r-haskell-language-= server-1.2.0.0/bin/" "/nix/store/mx8v4f0hq8nff5ab7mcgmmbxn5rk6al4-aeson-pre= tty-0.8.8/bin/" "/nix/store/xygkar338ssrwqjcpmmbv1pkkpqc1yfy-ghc-8.10.6/bin= /" "/nix/store/w16zhm17a73sn3sshqgpxjk3r265vb9l-ghcide-1.4.0.3/bin/" "/nix/= store/isja3hvzjmmg7278mdsyyn0k4s7k6cf8-constraints-extras-0.3.1.0/bin/" "/n= ix/store/9kz9pwpgnq4miywf5bk97xpn4qqz1h2c-hie-bios-0.7.5/bin/" "/nix/store/= wfpjw96bjc1kwx5spddwgpi8r4jrbc6b-hiedb-0.4.0.0/bin/" "/nix/store/il7l9fjr7r= 0sq00iy0jr6pcwcb97227p-shake-0.19.5/bin/" "/nix/store/9i7z6c6ydhkw1ch37hvpi= 6fywbfkyrm0-implicit-hie-0.1.2.6/bin/" "/nix/store/88kdasbl46rhfnz249dxnh5n= 9amr27pv-retrie-1.0.0.0/bin/" "/nix/store/i7djw6911qk0vkkxv5rsm2zh95arfmjp-= brittany-0.13.1.2/bin/" "/nix/store/5mpyw1f5jamnvnhsawj147vyvwpw054s-floske= ll-0.10.5/bin/" "/nix/store/aj2q5q38wzlsl60vwcxirlc133p3i8hj-fourmolu-0.3.0= .0/bin/" "/nix/store/mr0algmndmq73ybhnk3752ylhpnp7918-apply-refact-0.9.3.0/= bin/" "/nix/store/k9h1adjqqwmq39iik3253cgxdd5drgz8-hlint-3.2.7/bin/" "/nix/= store/rdjb7sx4clhzjfal0xhb41x1k62nchf0-cpphs-1.20.9.1/bin/" "/nix/store/wlh= 74ffhf19ychrcf65885jsx8xy5f8d-hscolour-1.24.4/bin/" "/nix/store/1lbb1bzjqcb= lb946av3703g76ng18jx1-ormolu-0.1.4.1-bin/bin/" "/nix/store/jvx2rcmbcrjpsvz4= p8z5zll4gchmhl75-stylish-haskell-0.12.2.0/bin/" "/nix/store/h0yyp8i85y3cahd= 1wyxb0a0izxqz2gxj-stack-2.7.3/bin/" "/nix/store/62m5yxq7f9gz4xn3qlvkvkna237= vz92k-hpack-0.34.4/bin/" "/nix/store/ki59g3c2y2ahpjja9hch3wxgl7gki5f3-musta= che-2.3.1/bin/" "/nix/store/1wdm2g4mz9is77iihfkbycq3m8c2frrv-open-browser-0= .2.1.0/bin/" "/nix/store/1570w56jrkvr90w9x158vyb5vahnk18v-coreutils-8.32/bi= n/" "/nix/store/ihxk2vlm0vi7c4j3gpm084kbxvz6v585-findutils-4.8.0/bin/" "/ni= x/store/kjx1mv85c5cgsrr4bwar22j7hbwj834m-diffutils-3.7/bin/" "/nix/store/gm= 2w08wwsa3vd500d8vq879s2lv65ldh-gnused-4.8/bin/" "/nix/store/v0slhpb2y3xa7gm= v4q6gblkdk7n0f09j-gnugrep-3.6/bin/" "/nix/store/2wn093wbc6ps4brcsppxjd14vxv= aa8a2-gawk-5.1.0/bin/" "/nix/store/5bxrjkyvqmzn1p897652y3lwa9fxagpw-gnutar-= 1.34/bin/" "/nix/store/liva1jnjdskrn57s42kfawr2zz66szzm-gzip-1.10/bin/" "/n= ix/store/ih2zkh2mbrx2c766ryk2i9hhlkly7snr-bzip2-1.0.6.0.2-bin/bin/" "/nix/s= tore/pvkiiw0mp1yx0b21b7k105yywccychgh-gnumake-4.3/bin/" "/nix/store/dpjnjrq= bgbm8a5wvi1hya01vd8wyvsq4-bash-4.4-p23/bin/" "/nix/store/aicl3kwfnaizk45ayg= m8bviqv7lk0a16-patch-2.7.6/bin/" "/nix/store/7jk6k46f56rszzc1bxi8mdrvcw53py= m4-xz-5.2.5-bin/bin/" "/home/dominik/Evolutionary-Biology/Scripts/nix-flake= s/" "/home/dominik/Evolutionary-Biology/Scripts/" "/home/dominik/bin/nix-fl= akes/" "/home/dominik/bin/" "/run/wrappers/bin/" "/home/dominik/.nix-profil= e/bin/" "/etc/profiles/per-user/dominik/bin/" "/nix/var/nix/profiles/defaul= t/bin/" "/run/current-system/sw/bin/" "/nix/store/3l9lddwxz1mayaxvw8iy50ygz= zfh1s1b-emacs-27.2/libexec/emacs/27.2/x86_64-pc-linux-gnu/") Original value was=20 ("/nix/store/cnxncxyghj3gfpfvng6z4l8k4hfl48wq-ghc-8.10.6-with-packages/bin"= "/nix/store/435paza0j48aa9vgvf6r2l12nrg4ld11-patchelf-0.12/bin" "/nix/stor= e/4xs1xyj8728yvh9y5v6ji819kwgfy2fv-gcc-wrapper-10.3.0/bin" "/nix/store/dlni= 53myj53kx20pi4yhm7p68lw17b07-gcc-10.3.0/bin" "/nix/store/6z35qvn00xrjvaznv9= kfy8xddbbdz4gl-glibc-2.33-47-bin/bin" "/nix/store/1570w56jrkvr90w9x158vyb5v= ahnk18v-coreutils-8.32/bin" "/nix/store/29bjq5hw1qglybp1a5f3ij9gxc2fyf94-bi= nutils-wrapper-2.35.1/bin" "/nix/store/v8imx1nvyz0hgvx9cbcmh6gp4ngw3ffj-bin= utils-2.35.1/bin" "/nix/store/iz7bgfvjmwdz3vgmzryhfkqwbn8zr2jn-ncurses-6.2/= bin" "/nix/store/w07a7k61dw5gnsyxj3kgcq3shr76jax8-bash-interactive-4.4-p23/= bin" "/nix/store/xhxll8hx0x9szhlvvd8h1c35glszlj34-cabal-install-3.4.0.0/bin= " "/nix/store/gbxdjp9z1bjx1zl6icckw093yv0vn21r-haskell-language-server-1.2.= 0.0/bin" "/nix/store/mx8v4f0hq8nff5ab7mcgmmbxn5rk6al4-aeson-pretty-0.8.8/bi= n" "/nix/store/xygkar338ssrwqjcpmmbv1pkkpqc1yfy-ghc-8.10.6/bin" "/nix/store= /w16zhm17a73sn3sshqgpxjk3r265vb9l-ghcide-1.4.0.3/bin" "/nix/store/isja3hvzj= mmg7278mdsyyn0k4s7k6cf8-constraints-extras-0.3.1.0/bin" "/nix/store/9kz9pwp= gnq4miywf5bk97xpn4qqz1h2c-hie-bios-0.7.5/bin" "/nix/store/wfpjw96bjc1kwx5sp= ddwgpi8r4jrbc6b-hiedb-0.4.0.0/bin" "/nix/store/il7l9fjr7r0sq00iy0jr6pcwcb97= 227p-shake-0.19.5/bin" "/nix/store/9i7z6c6ydhkw1ch37hvpi6fywbfkyrm0-implici= t-hie-0.1.2.6/bin" "/nix/store/88kdasbl46rhfnz249dxnh5n9amr27pv-retrie-1.0.= 0.0/bin" "/nix/store/i7djw6911qk0vkkxv5rsm2zh95arfmjp-brittany-0.13.1.2/bin= " "/nix/store/5mpyw1f5jamnvnhsawj147vyvwpw054s-floskell-0.10.5/bin" "/nix/s= tore/aj2q5q38wzlsl60vwcxirlc133p3i8hj-fourmolu-0.3.0.0/bin" "/nix/store/mr0= algmndmq73ybhnk3752ylhpnp7918-apply-refact-0.9.3.0/bin" "/nix/store/k9h1adj= qqwmq39iik3253cgxdd5drgz8-hlint-3.2.7/bin" "/nix/store/rdjb7sx4clhzjfal0xhb= 41x1k62nchf0-cpphs-1.20.9.1/bin" "/nix/store/wlh74ffhf19ychrcf65885jsx8xy5f= 8d-hscolour-1.24.4/bin" "/nix/store/1lbb1bzjqcblb946av3703g76ng18jx1-ormolu= -0.1.4.1-bin/bin" "/nix/store/jvx2rcmbcrjpsvz4p8z5zll4gchmhl75-stylish-hask= ell-0.12.2.0/bin" "/nix/store/h0yyp8i85y3cahd1wyxb0a0izxqz2gxj-stack-2.7.3/= bin" "/nix/store/62m5yxq7f9gz4xn3qlvkvkna237vz92k-hpack-0.34.4/bin" "/nix/s= tore/ki59g3c2y2ahpjja9hch3wxgl7gki5f3-mustache-2.3.1/bin" "/nix/store/1wdm2= g4mz9is77iihfkbycq3m8c2frrv-open-browser-0.2.1.0/bin" "/nix/store/1570w56jr= kvr90w9x158vyb5vahnk18v-coreutils-8.32/bin" "/nix/store/ihxk2vlm0vi7c4j3gpm= 084kbxvz6v585-findutils-4.8.0/bin" "/nix/store/kjx1mv85c5cgsrr4bwar22j7hbwj= 834m-diffutils-3.7/bin" "/nix/store/gm2w08wwsa3vd500d8vq879s2lv65ldh-gnused= -4.8/bin" "/nix/store/v0slhpb2y3xa7gmv4q6gblkdk7n0f09j-gnugrep-3.6/bin" "/n= ix/store/2wn093wbc6ps4brcsppxjd14vxvaa8a2-gawk-5.1.0/bin" "/nix/store/5bxrj= kyvqmzn1p897652y3lwa9fxagpw-gnutar-1.34/bin" "/nix/store/liva1jnjdskrn57s42= kfawr2zz66szzm-gzip-1.10/bin" "/nix/store/ih2zkh2mbrx2c766ryk2i9hhlkly7snr-= bzip2-1.0.6.0.2-bin/bin" "/nix/store/pvkiiw0mp1yx0b21b7k105yywccychgh-gnuma= ke-4.3/bin" "/nix/store/dpjnjrqbgbm8a5wvi1hya01vd8wyvsq4-bash-4.4-p23/bin" = "/nix/store/aicl3kwfnaizk45aygm8bviqv7lk0a16-patch-2.7.6/bin" "/nix/store/7= jk6k46f56rszzc1bxi8mdrvcw53pym4-xz-5.2.5-bin/bin" "/home/dominik/Evolutiona= ry-Biology/Scripts/nix-flakes" "/home/dominik/Evolutionary-Biology/Scripts"= "/home/dominik/bin/nix-flakes" "/home/dominik/bin" "/run/wrappers/bin" "/h= ome/dominik/.nix-profile/bin" "/etc/profiles/per-user/dominik/bin" "/nix/va= r/nix/profiles/default/bin" "/run/current-system/sw/bin" "/nix/store/3l9ldd= wxz1mayaxvw8iy50ygzzfh1s1b-emacs-27.2/libexec/emacs/27.2/x86_64-pc-linux-gn= u" "/nix/store/3l9lddwxz1mayaxvw8iy50ygzzfh1s1b-emacs-27.2/libexec/emacs/27= .2/x86_64-pc-linux-gnu") Local in buffer README.org; global value is=20 ("/home/dominik/Evolutionary-Biology/Scripts/nix-flakes" "/home/dominik/Evo= lutionary-Biology/Scripts" "/home/dominik/bin/nix-flakes" "/home/dominik/bi= n" "/run/wrappers/bin" "/home/dominik/.nix-profile/bin" "/etc/profiles/per-= user/dominik/bin" "/nix/var/nix/profiles/default/bin" "/run/current-system/= sw/bin" "/nix/store/3l9lddwxz1mayaxvw8iy50ygzzfh1s1b-emacs-27.2/libexec/ema= cs/27.2/x86_64-pc-linux-gnu") #+end_quote [1] https://github.com/purcell/envrc [2] https://github.com/purcell/inheritenv/issues/4 [3] https://orgmode.org/list/3d3611c4-17a6-4d55-875b-f566c28d297b@www.fastm= ail.com/