From mboxrd@z Thu Jan 1 00:00:00 1970 From: Andreas Leha Subject: Re: [BUG] [new exporter] \cite and \ref in odt export Date: Mon, 18 Jun 2012 09:55:34 +0200 Message-ID: <87bokhawax.fsf@med.uni-goettingen.de> References: <87wr35bqs2.fsf@med.uni-goettingen.de> <4FDECD70.1040105@christianmoe.com> <87k3z5ayww.fsf@med.uni-goettingen.de> <4FDEDB9A.1040000@christianmoe.com> <4FDEDBE9.5020703@christianmoe.com> Mime-Version: 1.0 Content-Type: text/plain Return-path: Received: from eggs.gnu.org ([208.118.235.92]:38255) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1SgWpO-0005KR-W6 for emacs-orgmode@gnu.org; Mon, 18 Jun 2012 03:56:53 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1SgWpM-0004JF-CU for emacs-orgmode@gnu.org; Mon, 18 Jun 2012 03:56:50 -0400 Received: from plane.gmane.org ([80.91.229.3]:38319) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1SgWpM-0004J5-1O for emacs-orgmode@gnu.org; Mon, 18 Jun 2012 03:56:48 -0400 Received: from list by plane.gmane.org with local (Exim 4.69) (envelope-from ) id 1SgWpH-0001c2-Br for emacs-orgmode@gnu.org; Mon, 18 Jun 2012 09:56:43 +0200 Received: from genepi110.genepi.med.uni-goettingen.de ([134.76.140.110]) by main.gmane.org with esmtp (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Mon, 18 Jun 2012 09:56:43 +0200 Received: from andreas.leha by genepi110.genepi.med.uni-goettingen.de with local (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Mon, 18 Jun 2012 09:56:43 +0200 List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org Hi Christian, > On 6/18/12 9:41 AM, Christian Moe wrote: >> Hi again, >> >> I'm sorry, I'm not looking into it as such -- I haven't had time to >> catch up with the new exporter goodies. I was just wondering if Org or >> ODT had suddenly developed any built-in bibtex formatting capabilities >> I wasn't aware of. :-) >> >> But if you want to test-pilot my clumsy first stab at getting bibtex >> bibliographies from Org into ODT and other non-latex backends, I'd >> value your feedback, and would hope to find the time somewhere down >> the line to improve it. >> >> http://lists.gnu.org/archive/html/emacs-orgmode/2012-01/msg00128.html I had read that and wanted to take a look, but completely forgot about it... I have used org-bibtex already successfully in the past. And it still is enabled in my config, which might add to/be the cause of the error here. Thanks for reminding me on org-cite. I'll try to remember to take a look this time. But this will have to wait until the end of next week. Regards, Andreas >> >> I've found Zotero -> Org -> ODT a more rewarding route, but Zotero's >> indifference to citekeys makes it difficult to adapt that to existing >> documents with bibtex cites. >> >> Yours, >> Christian >> >> >> On 6/18/12 8:59 AM, Andreas Leha wrote: >>> Hi Christian, >>> >>> thanks for looking into this. >>> >>>> Could you say what behavior you expect when exporting \cite commands >>>> to ODT? >>> >>> I would say: >>> Minimal expectation: error-free export >>> Maximal expectation: LaTeX-like reference ;-) >>> Realistic expectation: literal export (e.g. \cite{xxx}) as in the >>> ascii export >>> >>> Regards, >>> Andreas >>> >>> >>>> >>>> Yours, >>>> Christian >>>> >>>> On 6/17/12 10:57 PM, Andreas Leha wrote: >>>>> Hi all, >>>>> >>>>> I experience problems when using \ref and \cite in documents, and >>>>> then >>>>> exporting to odt. >>>>> >>>>> I can replace the \ref{uuu} with [[uuu]] (breaking compatibility with >>>>> the legacy exporter), but how would I replace \cite? >>>>> >>>>> My only 'solution' momentarily is to export with #+OPTIONS: LaTeX:nil >>>>> >>>>> >>>>> I guess this is a bug? >>>>> >>>>> Regards, >>>>> Andreas >>>>> >>>>> PS: >>>>> Here follows an example: >>>>> >>>>> Use this bib-file: >>>>> >>>>> ,----[ literature.bib ] >>>>> | @article{schulte:2012, >>>>> | author = "Eric Schulte and Dan Davison and Thomas Dye and >>>>> | Carsten Dominik", >>>>> | title = "A Multi-Language Computing Environment for Literate >>>>> | Programming and Reproducible Research", >>>>> | journal = "Journal of Statistical Software", >>>>> | volume = "46", >>>>> | number = "3", >>>>> | pages = "1--24", >>>>> | day = "25", >>>>> | month = "1", >>>>> | year = "2012", >>>>> | CODEN = "JSSOBK", >>>>> | ISSN = "1548-7660", >>>>> | bibdate = "2011-10-03", >>>>> | URL = "http://www.jstatsoft.org/v46/i03", >>>>> | accepted = "2011-10-03", >>>>> | acknowledgement ="", >>>>> | keywords = "", >>>>> | submitted = "2010-12-22", >>>>> | } >>>>> `---- >>>>> >>>>> When I try to export this file to odt: >>>>> >>>>> ,---- >>>>> | #+TITLE: Citations in non-LaTeX >>>>> | >>>>> | >>>>> | * Related Work... >>>>> | can be found in \cite{schulte:2012}. >>>>> | >>>>> | >>>>> | >>>>> | #+LATEX_HEADER: >>>>> \usepackage[natbib,backref,backend=bibtex,style=authoryear,isbn=false,url=false,eprint=false]{biblatex} >>>>> >>>>> | #+LATEX_HEADER: \bibliography{literature} >>>>> | #+LATEX_HEADER: \setlength{\bibhang}{1em} >>>>> | #+LATEX_HEADER: \usepackage{hyperref} >>>>> `---- >>>>> >>>>> I get this backtrace: >>>>> >>>>> ,---- >>>>> | Debugger entered--Lisp error: (wrong-type-argument stringp nil) >>>>> | expand-file-name(nil "/home/andreas/org/") >>>>> | (let* ((src-file (expand-file-name path (file-name-directory >>>>> | org-current-export-file))) (target-dir (format "Formula-%04d/" >>>>> | (incf org-e-odt-embedded-formulas-count))) (target-file (concat >>>>> | target-dir "content.xml"))) (message "Embedding %s as %s ..." >>>>> | (substring-no-properties path) target-file) (make-directory >>>>> | target-dir) (org-e-odt-create-manifest-file-entry >>>>> | "application/vnd.oasis.opendocument.formula" target-dir "1.2") >>>>> | (case (org-e-odt-is-formula-link-p src-file) (mathml (copy-file >>>>> | src-file target-file (quote overwrite))) (odf >>>>> | (org-e-odt-zip-extract-one src-file "content.xml" target-dir)) (t >>>>> | (error "%s is not a formula file" src-file))) >>>>> | (org-e-odt-create-manifest-file-entry "text/xml" target-file) >>>>> | target-file) >>>>> | org-e-odt-copy-formula-file(nil) >>>>> | (file-name-directory (org-e-odt-copy-formula-file src)) >>>>> | (org-e-odt-format-tags ">>>> | xlink:type=\"simple\" xlink:show=\"embed\" >>>>> | xlink:actuate=\"onLoad\"/>" "" (file-name-directory >>>>> | (org-e-odt-copy-formula-file src))) >>>>> | (let* ((src (cond ((eq (org-element-type element) (quote link)) >>>>> | (let* ((type ...) (raw-path ...)) (cond (... ...) (t raw-path)))) >>>>> | ((member (org-element-type element) (quote (latex-fragment >>>>> | latex-environment))) (let* ((latex-frag ...) (formula-link ...)) >>>>> | (and formula-link (string-match "file:\\([^]]*\\)" formula-link) >>>>> | (match-string 1 formula-link)))) (t (error "what is this?")))) >>>>> | (caption-from (case (org-element-type element) (link >>>>> | (org-export-get-parent-element element)) (t element))) (captions >>>>> | (org-e-odt-format-label caption-from info (quote definition))) >>>>> | (caption (car captions)) (href (org-e-odt-format-tags >>>>> | ">>>> | xlink:show=\"embed\" xlink:actuate=\"onLoad\"/>" "" >>>>> | (file-name-directory (org-e-odt-copy-formula-file src)))) >>>>> | (embed-as (if >>>> caption (quote paragraph) (quote character))) width height) (cond >>>> ((eq embed-as (quote character)) (org-e-odt-format-entity >>>> "InlineFormula" href width height)) (t (let ((table-info nil) >>>> (table-info (quote (:alignment ["c" "c"] :column-groups [nil nil] >>>> :row-groups ... :special-column-p nil :width [8 1]))) >>>> (org-lparse-table-ncols 2)) (org-e-odt-list-table (list (list >>>> (org-e-odt-format-entity "CaptionedDisplayFormula" href width height >>>> captions) (let* ... ...))) (quote (table (:attr_odt ...))) info))))) >>>>> | org-e-odt-format-formula((latex-fragment (:value >>>>> | "\\cite{schulte:2012}" :begin 70 :end 89 :post-blank 0 :parent >>>>> | (paragraph (:begin 54 :end 94 :contents-begin 54 :contents-end 90 >>>>> | :post-blank 3 :parent (section (:begin 54 :end 336 :contents-begin >>>>> | 54 :contents-end 336 :post-blank 0 :parent (headline (:raw-value >>>>> | "Related Work..." :title ... :begin 36 :end 336 :pre-blank 0 >>>>> | :hiddenp nil :contents-begin 54 :contents-end 336 :level 1 >>>>> | :priority nil :tags nil :todo-keyword nil :todo-type nil >>>>> | :scheduled nil :deadline nil :timestamp nil :clock nil :post-blank >>>>> | 0 :footnote-section-p nil :archivedp nil :commentedp nil :quotedp >>>>> | nil :category nil :parent ...) #4)) #2 (keyword (:key >>>>> | "LATEX_HEADER" :value >>>>> | >>>>> "\\usepackage[natbib,backref,backend=bibtex,style=authoryear,isbn=false,url=false,eprint=false]{bi >>>>> >>>> blatex}" :begin 94 :end 214 :post-blank 0 :parent #4)) (keyword (:key >>>> "LATEX_HEADER" :value "\\bibliography{literature}" :begin 214 :end 256 >>>> :post-blank 0 :parent #4)) (keyword (:key "LATEX_HEADER" : >>>> value "\\setlength{\\bibhang}{1em}" :begin 256 :end 298 :post-blank 0 >>>> :parent #4)) (keyword (:key "LATEX_HEADER" :value >>>> "\\usepackage{hyperref}" :begin 298 :end 336 :post-blank 0 :parent >>>> #4)))) "can be found in " #0 "."))) (:author "Andreas Leha" :creator >>>> "Generated by Org mode 7.8.11 in Emacs 24.1.50.1." :date nil >>>> :description nil :email "andreas@werner" :exclude-tags ("noexport") >>>> :headline-levels 3 :keywords nil :language "en" :preserve-breaks nil >>>> :section-numbers t :select-tags ("export") :time-stamp-file t :title >>>> ("Citations in non-LaTeX") :with-archived-trees headline :with-author >>>> t :with-clocks nil :with-creator comment :with-drawers nil :with-email >>>> nil :with-emphasize t :with-entities t :with-fixed-width t >>>> :with-footnotes t :with-plannings nil ...)) >>>>> | .... >>>>> | .... >>>>> | .... >>>>> | org-export-dispatch() >>>>> | call-interactively(org-export-dispatch record nil) >>>>> | command-execute(org-export-dispatch record) >>>>> | execute-extended-command(nil "org-export-dispatch") >>>>> | call-interactively(execute-extended-command nil nil) >>>>> `---- >>>>> >>>>> >>>>> >>> >>> >>> >>