* BUG? table output despite "#+begin_src sh :results verbatim" @ 2013-01-25 18:54 Cook, Malcolm 2013-01-25 19:43 ` Thomas S. Dye 0 siblings, 1 reply; 9+ messages in thread From: Cook, Malcolm @ 2013-01-25 18:54 UTC (permalink / raw) To: 'emacs-orgmode@gnu.org' Hi, In org 7.9.3d, under Gnu emacs 24.2.1 / linux: I find that org-mode is tablizing shell output despite require 'verbatim' results. #+begin_src sh :results verbatim echo 1 echo 2 echo 3 #+end_src #+results: | 1 | | 2 | | 3 | The same happens if I used 'scalar' in place of verbatim. I see that :results processing is somewhat happening, as evidenced by using ":results org" , as below. #+begin_src sh :results org echo 1 echo 2 echo 3 #+end_src #+results: #+BEGIN_SRC org | 1 | | 2 | | 3 | #+END_SRC Any tips/workarounds/upgrades needed? Malcolm Cook Computational Biology - Stowers Institute for Medical Research ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-25 18:54 BUG? table output despite "#+begin_src sh :results verbatim" Cook, Malcolm @ 2013-01-25 19:43 ` Thomas S. Dye 2013-01-25 19:44 ` Cook, Malcolm 2013-01-25 22:12 ` Sebastien Vauban 0 siblings, 2 replies; 9+ messages in thread From: Thomas S. Dye @ 2013-01-25 19:43 UTC (permalink / raw) To: Cook, Malcolm; +Cc: 'emacs-orgmode@gnu.org' Aloha Malcolm, "Cook, Malcolm" <MEC@stowers.org> writes: > Hi, > > In org 7.9.3d, under Gnu emacs 24.2.1 / linux: > > I find that org-mode is tablizing shell output despite require > verbatim' results. > > #+begin_src sh :results verbatim > echo 1 > echo 2 > echo 3 > #+end_src > > #+results: > | 1 | > | 2 | > | 3 | Hmm, I get this: #+begin_src sh :results verbatim echo 1 echo 2 echo 3 #+end_src #+results: : 1 : 2 : 3 #+begin_src sh :results scalar echo 1 echo 2 echo 3 #+end_src #+results: : 1 : 2 : 3 #+begin_src sh :results table echo 1 echo 2 echo 3 #+end_src #+results: | 1 | | 2 | | 3 | #+begin_src sh :results list echo 1 echo 2 echo 3 #+end_src #+results: - (1) - (2) - (3) #+begin_src sh :results org echo 1 echo 2 echo 3 #+end_src #+results: #+BEGIN_SRC org | 1 | | 2 | | 3 | #+END_SRC Not sure why our results differ, though. Tom -- Thomas S. Dye http://www.tsdye.com ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-25 19:43 ` Thomas S. Dye @ 2013-01-25 19:44 ` Cook, Malcolm 2013-01-25 20:31 ` Thomas S. Dye 2013-01-25 22:12 ` Sebastien Vauban 1 sibling, 1 reply; 9+ messages in thread From: Cook, Malcolm @ 2013-01-25 19:44 UTC (permalink / raw) To: 'Thomas S. Dye'; +Cc: 'emacs-orgmode@gnu.org' Thomas, Thanks for checking. What does meta-x org-version tell you ?? ~Malcolm .-----Original Message----- .From: Thomas S. Dye [mailto:tsd@tsdye.com] .Sent: Friday, January 25, 2013 1:44 PM .To: Cook, Malcolm .Cc: 'emacs-orgmode@gnu.org' .Subject: Re: BUG? table output despite "#+begin_src sh :results verbatim" . .Aloha Malcolm, . ."Cook, Malcolm" <MEC@stowers.org> writes: . .> Hi, .> .> In org 7.9.3d, under Gnu emacs 24.2.1 / linux: .> .> I find that org-mode is tablizing shell output despite require .> verbatim' results. .> .> #+begin_src sh :results verbatim .> echo 1 .> echo 2 .> echo 3 .> #+end_src .> .> #+results: .> | 1 | .> | 2 | .> | 3 | . .Hmm, I get this: . .#+begin_src sh :results verbatim . echo 1 . echo 2 . echo 3 .#+end_src . .#+results: .: 1 .: 2 .: 3 . .#+begin_src sh :results scalar . echo 1 . echo 2 . echo 3 .#+end_src . .#+results: .: 1 .: 2 .: 3 . .#+begin_src sh :results table . echo 1 . echo 2 . echo 3 .#+end_src . .#+results: .| 1 | .| 2 | .| 3 | . .#+begin_src sh :results list . echo 1 . echo 2 . echo 3 .#+end_src . .#+results: .- (1) .- (2) .- (3) . .#+begin_src sh :results org . echo 1 . echo 2 . echo 3 .#+end_src . .#+results: .#+BEGIN_SRC org .| 1 | .| 2 | .| 3 | .#+END_SRC . .Not sure why our results differ, though. . .Tom . .-- .Thomas S. Dye .http://www.tsdye.com ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-25 19:44 ` Cook, Malcolm @ 2013-01-25 20:31 ` Thomas S. Dye 2013-01-25 21:08 ` Cook, Malcolm 0 siblings, 1 reply; 9+ messages in thread From: Thomas S. Dye @ 2013-01-25 20:31 UTC (permalink / raw) To: Cook, Malcolm; +Cc: 'emacs-orgmode@gnu.org' "Cook, Malcolm" <MEC@stowers.org> writes: > Thomas, > > Thanks for checking. > > What does > > meta-x org-version > > tell you > > ?? Org-mode version 7.9.3d (release_7.9.3d-830-g780b45 @ /Users/dk/.emacs.d/src/org-mode/lisp/) -- T.S. Dye & Colleagues, Archaeologists 735 Bishop St, Suite 315, Honolulu, HI 96813 Tel: 808-529-0866, Fax: 808-529-0884 http://www.tsdye.com ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-25 20:31 ` Thomas S. Dye @ 2013-01-25 21:08 ` Cook, Malcolm 2013-01-26 19:36 ` Eric Schulte 0 siblings, 1 reply; 9+ messages in thread From: Cook, Malcolm @ 2013-01-25 21:08 UTC (permalink / raw) To: 'Thomas S. Dye' Cc: Blanchette, Marco, 'emacs-orgmode@gnu.org' THanks Thomas, I see we are running same version of org.... Has anyone else reading this got an idea what would cause org to table-ize shell output despite a `:results verbatim` in the source block header? Thanks! ~Malcolm .-----Original Message----- .From: Thomas S. Dye [mailto:tsd@tsdye.com] .Sent: Friday, January 25, 2013 2:31 PM .To: Cook, Malcolm .Cc: 'emacs-orgmode@gnu.org' .Subject: Re: BUG? table output despite "#+begin_src sh :results verbatim" . ."Cook, Malcolm" <MEC@stowers.org> writes: . .> Thomas, .> .> Thanks for checking. .> .> What does .> .> meta-x org-version .> .> tell you .> .> ?? . .Org-mode version 7.9.3d (release_7.9.3d-830-g780b45 @ /Users/dk/.emacs.d/src/org-mode/lisp/) . .-- .T.S. Dye & Colleagues, Archaeologists .735 Bishop St, Suite 315, Honolulu, HI 96813 .Tel: 808-529-0866, Fax: 808-529-0884 .http://www.tsdye.com ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-25 21:08 ` Cook, Malcolm @ 2013-01-26 19:36 ` Eric Schulte 2013-01-26 21:48 ` Achim Gratz 2013-01-28 18:23 ` Cook, Malcolm 0 siblings, 2 replies; 9+ messages in thread From: Eric Schulte @ 2013-01-26 19:36 UTC (permalink / raw) To: Cook, Malcolm Cc: Blanchette, Marco, 'emacs-orgmode@gnu.org', 'Thomas S. Dye' "Cook, Malcolm" <MEC@stowers.org> writes: > THanks Thomas, I see we are running same version of org.... > > Has anyone else reading this got an idea what would cause org to > table-ize shell output despite a `:results verbatim` in the source > block header? > > Thanks! > Hi Malcolm, Try starting emacs without any of your personalized configuration loaded using the -Q option. If the problem disappears, then it is due to something in your personal config. If you still experience the problem you may want to ensure that you aren't using `org-babel-execute-src-block' from an old version of Org-mode by executing the following from your scratch buffer ;; emacs-lisp (when (require 'find-func) (find-function 'org-babel-execute-src-block)) and then ensuring that the file is in the current Org-mode installation directory. Cheers, > > ~Malcolm > > > .-----Original Message----- > .From: Thomas S. Dye [mailto:tsd@tsdye.com] > .Sent: Friday, January 25, 2013 2:31 PM > .To: Cook, Malcolm > .Cc: 'emacs-orgmode@gnu.org' > .Subject: Re: BUG? table output despite "#+begin_src sh :results verbatim" > . > ."Cook, Malcolm" <MEC@stowers.org> writes: > . > .> Thomas, > .> > .> Thanks for checking. > .> > .> What does > .> > .> meta-x org-version > .> > .> tell you > .> > .> ?? > . > .Org-mode version 7.9.3d (release_7.9.3d-830-g780b45 @ /Users/dk/.emacs.d/src/org-mode/lisp/) > . > .-- > .T.S. Dye & Colleagues, Archaeologists > .735 Bishop St, Suite 315, Honolulu, HI 96813 > .Tel: 808-529-0866, Fax: 808-529-0884 > .http://www.tsdye.com > -- Eric Schulte http://cs.unm.edu/~eschulte ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-26 19:36 ` Eric Schulte @ 2013-01-26 21:48 ` Achim Gratz 2013-01-28 18:23 ` Cook, Malcolm 1 sibling, 0 replies; 9+ messages in thread From: Achim Gratz @ 2013-01-26 21:48 UTC (permalink / raw) To: emacs-orgmode Eric Schulte writes: > If you still experience the problem you may want to ensure that you > aren't using `org-babel-execute-src-block' from an old version of > Org-mode by executing the following from your scratch buffer > > ;; emacs-lisp > (when (require 'find-func) > (find-function 'org-babel-execute-src-block)) Unless you really want to open the source file of course, I'd rather use (symbol-file 'org-babel-execute-src-block) for this check. If the result is nil, then the function wasn't defined at all. If the function is currently defined as an autoload (but the defining library has not been loaded), then you'll get a relative filename that will resolve via load-path at the point of first use. If the library that defines the function has been loaded already, then you'll get the absolute path to the file it has been loaded from. Regards, Achim. -- +<[Q+ Matrix-12 WAVE#46+305 Neuron microQkb Andromeda XTk Blofeld]>+ Waldorf MIDI Implementation & additional documentation: http://Synth.Stromeko.net/Downloads.html#WaldorfDocs ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-26 19:36 ` Eric Schulte 2013-01-26 21:48 ` Achim Gratz @ 2013-01-28 18:23 ` Cook, Malcolm 1 sibling, 0 replies; 9+ messages in thread From: Cook, Malcolm @ 2013-01-28 18:23 UTC (permalink / raw) To: 'Eric Schulte' Cc: Blanchette, Marco, 'emacs-orgmode@gnu.org', 'Thomas S. Dye' Eric, Mucho Kudos.... indeed.... I had an old patch to org-babel-execute:sh tucked away masking your released version. 'nuff said, except Thanks, again, very much, Mea culpa, ~Malcolm .-----Original Message----- .From: Eric Schulte [mailto:schulte.eric@gmail.com] .Sent: Saturday, January 26, 2013 1:37 PM .To: Cook, Malcolm .Cc: 'Thomas S. Dye'; Blanchette, Marco; 'emacs-orgmode@gnu.org' .Subject: Re: [O] BUG? table output despite "#+begin_src sh :results verbatim" . ."Cook, Malcolm" <MEC@stowers.org> writes: . .> THanks Thomas, I see we are running same version of org.... .> .> Has anyone else reading this got an idea what would cause org to .> table-ize shell output despite a `:results verbatim` in the source .> block header? .> .> Thanks! .> . .Hi Malcolm, . .Try starting emacs without any of your personalized configuration loaded .using the -Q option. If the problem disappears, then it is due to .something in your personal config. . .If you still experience the problem you may want to ensure that you .aren't using `org-babel-execute-src-block' from an old version of .Org-mode by executing the following from your scratch buffer . . ;; emacs-lisp . (when (require 'find-func) . (find-function 'org-babel-execute-src-block)) . .and then ensuring that the file is in the current Org-mode installation .directory. . .Cheers, . .> .> ~Malcolm .> .> .> .-----Original Message----- .> .From: Thomas S. Dye [mailto:tsd@tsdye.com] .> .Sent: Friday, January 25, 2013 2:31 PM .> .To: Cook, Malcolm .> .Cc: 'emacs-orgmode@gnu.org' .> .Subject: Re: BUG? table output despite "#+begin_src sh :results verbatim" .> . .> ."Cook, Malcolm" <MEC@stowers.org> writes: .> . .> .> Thomas, .> .> .> .> Thanks for checking. .> .> .> .> What does .> .> .> .> meta-x org-version .> .> .> .> tell you .> .> .> .> ?? .> . .> .Org-mode version 7.9.3d (release_7.9.3d-830-g780b45 @ /Users/dk/.emacs.d/src/org-mode/lisp/) .> . .> .-- .> .T.S. Dye & Colleagues, Archaeologists .> .735 Bishop St, Suite 315, Honolulu, HI 96813 .> .Tel: 808-529-0866, Fax: 808-529-0884 .> .http://www.tsdye.com .> . .-- .Eric Schulte .http://cs.unm.edu/~eschulte ^ permalink raw reply [flat|nested] 9+ messages in thread
* Re: BUG? table output despite "#+begin_src sh :results verbatim" 2013-01-25 19:43 ` Thomas S. Dye 2013-01-25 19:44 ` Cook, Malcolm @ 2013-01-25 22:12 ` Sebastien Vauban 1 sibling, 0 replies; 9+ messages in thread From: Sebastien Vauban @ 2013-01-25 22:12 UTC (permalink / raw) To: emacs-orgmode-mXXj517/zsQ Hi Thomas and Malcolm, Thomas S. Dye wrote: > Aloha Malcolm, > > "Cook, Malcolm" <MEC-5NBH63dZDaxAfugRpC6u6w@public.gmane.org> writes: > >> Hi, >> >> In org 7.9.3d, under Gnu emacs 24.2.1 / linux: >> >> I find that org-mode is tablizing shell output despite require >> verbatim' results. >> >> #+begin_src sh :results verbatim >> echo 1 >> echo 2 >> echo 3 >> #+end_src >> >> #+results: >> | 1 | >> | 2 | >> | 3 | > > Hmm, I get this: > > #+begin_src sh :results verbatim > echo 1 > echo 2 > echo 3 > #+end_src > > #+results: > : 1 > : 2 > : 3 > > #+begin_src sh :results scalar > echo 1 > echo 2 > echo 3 > #+end_src > > #+results: > : 1 > : 2 > : 3 In both cases (verbatim or scalar, which are synonyms), I do have: #+begin_src sh :results verbatim echo 1 echo 2 echo 3 #+end_src #+results: #+begin_example 1 2 3 #+end_example (I configured Babel so that to get lines prefixed by ":" only if there is *one* line of results) For the rest, I got the same as you: > #+begin_src sh :results table > echo 1 > echo 2 > echo 3 > #+end_src > > #+results: > | 1 | > | 2 | > | 3 | > > #+begin_src sh :results list > echo 1 > echo 2 > echo 3 > #+end_src > > #+results: > - (1) > - (2) > - (3) ... and wonder why the figures here are enclosed between parentheses... Best regards, Seb -- Sebastien Vauban ^ permalink raw reply [flat|nested] 9+ messages in thread
end of thread, other threads:[~2013-01-28 18:23 UTC | newest] Thread overview: 9+ messages (download: mbox.gz follow: Atom feed -- links below jump to the message on this page -- 2013-01-25 18:54 BUG? table output despite "#+begin_src sh :results verbatim" Cook, Malcolm 2013-01-25 19:43 ` Thomas S. Dye 2013-01-25 19:44 ` Cook, Malcolm 2013-01-25 20:31 ` Thomas S. Dye 2013-01-25 21:08 ` Cook, Malcolm 2013-01-26 19:36 ` Eric Schulte 2013-01-26 21:48 ` Achim Gratz 2013-01-28 18:23 ` Cook, Malcolm 2013-01-25 22:12 ` Sebastien Vauban
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