;;; org-babel-python.el --- org-babel functions for python evaluation ;; Copyright (C) 2009 Eric Schulte ;; Author: Eric Schulte ;; Keywords: literate programming, reproducible research ;; Homepage: http://orgmode.org ;; Version: 0.01 ;;; License: ;; This program is free software; you can redistribute it and/or modify ;; it under the terms of the GNU General Public License as published by ;; the Free Software Foundation; either version 3, or (at your option) ;; any later version. ;; ;; This program is distributed in the hope that it will be useful, ;; but WITHOUT ANY WARRANTY; without even the implied warranty of ;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the ;; GNU General Public License for more details. ;; ;; You should have received a copy of the GNU General Public License ;; along with GNU Emacs; see the file COPYING. If not, write to the ;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, ;; Boston, MA 02110-1301, USA. ;;; Commentary: ;; Org-Babel support for evaluating python source code. ;;; Code: (require 'org-babel) (require 'org-babel-tangle) (require 'org-babel-comint) (require (if (featurep 'xemacs) 'python-mode 'python)) (org-babel-add-interpreter "python") (add-to-list 'org-babel-tangle-langs '("python" "py" "#!/usr/bin/env python")) (defun org-babel-expand-body:python (body params &optional processed-params) (concat (mapconcat ;; define any variables (lambda (pair) (format "%s=%s" (car pair) (org-babel-python-var-to-python (cdr pair)))) (second (or processed-params (org-babel-process-params params))) "\n") "\n" (org-babel-trim body) "\n")) (defun org-babel-execute:python (body params) "Execute a block of Python code with org-babel. This function is called by `org-babel-execute-src-block'." (message "executing Python source code block") (let* ((processed-params (org-babel-process-params params)) (session (org-babel-python-initiate-session (first processed-params))) (result-params (third processed-params)) (result-type (fourth processed-params)) (full-body (org-babel-expand-body:python body params processed-params)) ;; then the source block body (result (org-babel-python-evaluate session full-body result-type))) (or (cdr (assoc :file params)) (org-babel-reassemble-table result (org-babel-pick-name (nth 4 processed-params) (cdr (assoc :colnames params))) (org-babel-pick-name (nth 5 processed-params) (cdr (assoc :rownames params))))))) (defun org-babel-prep-session:python (session params) "Prepare SESSION according to the header arguments specified in PARAMS." (let* ((session (org-babel-python-initiate-session session)) (vars (org-babel-ref-variables params)) (var-lines (mapcar ;; define any variables (lambda (pair) (format "%s=%s" (car pair) (org-babel-python-var-to-python (cdr pair)))) vars))) (org-babel-comint-in-buffer session (mapc (lambda (var) (end-of-line 1) (insert var) (comint-send-input) (org-babel-comint-wait-for-output session)) var-lines)) session)) (defun org-babel-load-session:python (session body params) "Load BODY into SESSION." (save-window-excursion (let ((buffer (org-babel-prep-session:python session params))) (with-current-buffer buffer (goto-char (process-mark (get-buffer-process (current-buffer)))) (insert (org-babel-chomp body))) buffer))) ;; helper functions (defun org-babel-python-var-to-python (var) "Convert an elisp var into a string of python source code specifying a var of the same value." (if (listp var) (concat "[" (mapconcat #'org-babel-python-var-to-python var ", ") "]") (format "%S" var))) (defun org-babel-python-table-or-string (results) "If the results look like a list or tuple, then convert them into an Emacs-lisp table, otherwise return the results as a string." (org-babel-read (if (or (string-match "^\\[.+\\]$" results) (string-match "^(.+)$" results)) (org-babel-read (concat "'" (replace-regexp-in-string "\\[" "(" (replace-regexp-in-string "\\]" ")" (replace-regexp-in-string ", " " " (replace-regexp-in-string "'" "\"" results)))))) results))) (defvar org-babel-python-buffers '(:default . nil)) (defun org-babel-python-session-buffer (session) (cdr (assoc session org-babel-python-buffers))) (defun org-babel-python-initiate-session-by-key (&optional session) "If there is not a current inferior-process-buffer in SESSION then create. Return the initialized session." (save-window-excursion (let* ((session (if session (intern session) :default)) (python-buffer (org-babel-python-session-buffer session))) (cond ((fboundp 'run-python) ; python.el (run-python)) ((fboundp 'py-shell) ; python-mode.el ;; `py-shell' creates a buffer whose name is the value of ;; `py-which-bufname' with '*'s at the beginning and end (let* ((bufname (if python-buffer (replace-regexp-in-string "^\\*\\([^*]+\\)\\*$" "\\1" python-buffer) ; zap surrounding * (concat "Python-" (symbol-name session)))) (py-which-bufname bufname)) ; avoid making a mess with buffer-local (py-shell) (setq python-buffer (concat "*" bufname "*")))) (t (error "No function available for running an inferior python."))) (setq org-babel-python-buffers (cons (cons session python-buffer) (assq-delete-all session org-babel-python-buffers))) session))) (defun org-babel-python-initiate-session (&optional session params) (unless (string= session "none") (org-babel-python-session-buffer (org-babel-python-initiate-session-by-key session)))) (defvar org-babel-python-last-value-eval "_" "When evaluated by Python this returns the return value of the last statement.") (defvar org-babel-python-pp-last-value-eval '("results = _" "import pprint" "org_babel_pp = pprint.PrettyPrinter()" "org_babel_pp.pprint(results)") "When evaluated by Python this pretty prints the value of the last statement.") (defvar org-babel-python-eoe-indicator "'org_babel_python_eoe'" "Used to indicate that evaluation is has completed.") (defvar org-babel-python-wrapper-method " def main(): %s open('%s', 'w').write( str(main()) )") (defvar org-babel-python-pp-wrapper-method " import pprint def main(): %s open('%s', 'w').write( pprint.pformat(main()) )") (defun org-babel-python-evaluate (buffer body &optional result-type) "Pass BODY to the Python process in BUFFER. If RESULT-TYPE equals 'output then return a list of the outputs of the statements in BODY, if RESULT-TYPE equals 'value then return the value of the last statement in BODY, as elisp." (if (not session) ;; external process evaluation (save-excursion (case result-type (output (with-temp-buffer (insert body) ;; (message "buffer=%s" (buffer-string)) ;; debugging (org-babel-shell-command-on-region (point-min) (point-max) "python" 'current-buffer 'replace) (buffer-string))) (value (let* ((tmp-file (make-temp-file "org-babel-python-results-")) exit-code (stderr (with-temp-buffer (insert (format (if (member "pp" result-params) org-babel-python-pp-wrapper-method org-babel-python-wrapper-method) (mapconcat (lambda (line) (format "\t%s" line)) (split-string (org-remove-indentation (org-babel-trim body)) "[\r\n]") "\n") tmp-file)) ;; (message "buffer=%s" (buffer-string)) ;; debugging (setq exit-code (org-babel-shell-command-on-region (point-min) (point-max) "python" nil 'replace (current-buffer))) (buffer-string)))) (if (> exit-code 0) (org-babel-error-notify exit-code stderr)) (let ((raw (with-temp-buffer (insert-file-contents (org-babel-maybe-remote-file tmp-file)) (buffer-string)))) (if (or (member "code" result-params) (member "pp" result-params)) raw (org-babel-python-table-or-string raw))))))) ;; comint session evaluation (org-babel-comint-in-buffer buffer (let* ((raw (org-babel-comint-with-output buffer org-babel-python-eoe-indicator t ;; for some reason python is fussy, and likes enters after every input (let ((comint-process-echoes nil)) (mapc (lambda (statement) (insert statement) (comint-send-input)) (split-string (org-babel-trim body) "[\r\n]+")) (comint-send-input) (comint-send-input) (if (member "pp" result-params) (mapc (lambda (statement) (insert statement) (comint-send-input)) org-babel-python-pp-last-value-eval) (insert org-babel-python-last-value-eval)) (comint-send-input) (comint-send-input) (insert org-babel-python-eoe-indicator) (comint-send-input)))) (raw (apply #'append ; split further (mapcar #'(lambda (r) (split-string r "[\r\n]+")) raw))) (results (delete org-babel-python-eoe-indicator (cdr (member org-babel-python-eoe-indicator (mapcar #'org-babel-trim raw)))))) (unless (or (member "code" result-params) (member "pp" result-params)) (setq results (mapcar #'org-babel-python-read-string results))) (case result-type (output (org-babel-trim (mapconcat #'identity (reverse (cdr results)) "\n"))) (value (if (or (member "code" result-params) (member "pp" result-params)) (car results) (org-babel-python-table-or-string (org-babel-trim (car results)))))))))) (defun org-babel-python-read-string (string) "Strip 's from around python string" (if (string-match "^'\\([^\000]+\\)'$" string) (match-string 1 string) string)) (provide 'org-babel-python) ;;; org-babel-python.el ends here