From: "Berry, Charles" <ccberry@health.ucsd.edu>
To: Ihor Radchenko <yantar92@posteo.net>
Cc: "William Denton" <wtd@pobox.com>,
"Frédéric Santos" <frederic.santos@u-bordeaux.fr>,
"emacs-orgmode@gnu.org" <emacs-orgmode@gnu.org>
Subject: Re: [BUG] ob-R: session evaluation returns empty ouputs with Org 9.6 [9.6 ( @ /home/fsantos/.emacs.d/elpa/org-9.6/)]
Date: Thu, 1 Dec 2022 21:18:02 +0000 [thread overview]
Message-ID: <68952C61-AD16-4863-BB46-24ECDA46AE8C@health.ucsd.edu> (raw)
In-Reply-To: <87fsdzuc61.fsf@localhost>
> On Nov 30, 2022, at 5:48 PM, Ihor Radchenko <yantar92@posteo.net> wrote:
>
> William Denton <wtd@pobox.com> writes:
>
>> I tried that, but it didn't fix it. :(
>
> Ok. I was able to reproduce on my side.
>
>> With a minimal setup, running the R block with a :session makes it ask where the
>> working directory should be (the default in the prompt is the directory the test
>> Org file is in). Setting ess-startup-directory to 'default-directory doesn't
>> change that, or the output problem.
>
> It looks like there is something wrong with comint-prompt-regexp in R
> buffers. It somehow does not match the prompt.
>
> I will need to look further.
>
The older (commit bed47b437d8cde7a98bafdb07996e248b40f70e6e) version of org-babel-comint-with-output used comint-prompt-regexp and works fine.
I don't really follow how `org-babel-comint-prompt-separator` gets set to something useful in the current version.
Reverting org-babel-comint-with-output to that older commit (and eval-ing the defun for org-babel-R-evaluate-session) seems to fix this case for those who need `:results output` in R src blocks till this gets sorted out.
HTH,
Chuck
next prev parent reply other threads:[~2022-12-01 21:19 UTC|newest]
Thread overview: 15+ messages / expand[flat|nested] mbox.gz Atom feed top
2022-11-30 13:33 [BUG] ob-R: session evaluation returns empty ouputs with Org 9.6 [9.6 ( @ /home/fsantos/.emacs.d/elpa/org-9.6/)] Frédéric Santos
2022-11-30 22:47 ` Cook, Malcolm
2022-12-01 5:48 ` Ihor Radchenko
2022-12-01 6:26 ` William Denton
2022-12-01 1:48 ` Ihor Radchenko
2022-12-01 7:26 ` Frederic Santos
2022-12-01 16:34 ` Greg Minshall
2022-12-02 5:08 ` Ihor Radchenko
2022-12-01 21:18 ` Berry, Charles [this message]
2022-12-02 6:02 ` Ihor Radchenko
2022-12-03 22:06 ` Jeremie Juste
2022-12-06 23:40 ` Cook, Malcolm
2022-12-07 12:25 ` Ihor Radchenko
2022-12-07 17:50 ` Cook, Malcolm
2022-12-07 19:04 ` Jeremie Juste
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