Re: How to specify column alignment in LaTeX table output?

[Richard H Stanton <rhstanton@berkeley.edu>]

[-- Attachment #1: Type: text/plain, Size: 6517 bytes --]

> On Jan 10, 2025, at 8:59 AM, Richard H Stanton <rhstanton@berkeley.edu> wrote:
> 
>> 
>> On Jan 10, 2025, at 1:47 AM, Rens Oliemans <hallo@rensoliemans.nl> wrote:
>> 
>> Richard H Stanton <rhstanton@berkeley.edu> writes:
>> 
>>> what are the recommended headers for a Python code block that exports a table? For example, ":results output raw” and ":results output drawer” both seem to work (without :wrap), while “:results output” puts everything in an example block, which then seems to get exported verbatim, not as a LaTeX table.
>> 
>> Take a look at
>> https://orgmode.org/worg/org-contrib/babel/languages/ob-doc-python.html. I found
>> this link in the Org manual, "(org) Results of Evaluation", and then to
>> "Documentation" link of python. From that page:
>> 
>>   :results {output, value}: Output results come from whatever the python code
>>   prints on stdout. Value results are the value of the last expression
>>   evaluated in the code block. Value mode is the default (as with other
>>   languages). In value mode you can use the following subtypes:
>> 
>>       verbatim: value is returned as string. In particular, use this to
>>       prevent conversion of lists and tuples to tables.
>> 
>>       table: (Org 9.7+) Try to convert the result to an Org table. Dicts,
>>       numpy arrays, and pandas DataFrames/Series can be returned as tables
>>       this way (by default, they are printed verbatim). Note that lists and
>>       tuples are already converted to table by default (use verbatim to
>>       prevent that).
>> 
>> So, ':results output' will output whatever python prints to stdout. With
>> 'print()', I think that this will just be a string, and no conversion will take
>> place. If you specify 'output raw', python will still just print the string, but
>> *Org mode* will now interpret it as raw Org mode. This will probably work fine,
>> but you'll have to add '|' and newlines in your string correctly. Alternative:
>> 
>> ':results value', the default. In this case ob-python will convert lists and
>> tuples to tables by default (and optionally, dicts and DataFrames as well).
>> 
>> That would be my recommendation: a code block with the default headers, which
>> returns a list of lists. I've attached an org file which does this.
>> 
>>> I actually generate this table from a Python code block. In the past, I’ve often run into problems with raw output (like this), where running the code block multiple times causes the output to appear multiple times, rather than overwriting.
>> 
>> ':results append' will cause the output to appear multiple times, but I expect
>> that it happened due to other circumstances (':results replace' is default and I
>> expect you didn't change that). One such circumstance is when you, say, add a
>> ':results output' header argument, and then change it back. For reasons unknown
>> to me, Org mode will then see the previous #+RESULTS: block as unrelated to the
>> current one, and will not replace it.
>> 
>> This is then kind of annoying, because you'll have to add the #+ATTR_LATEX: line
>> to the table again. I'd fix this manually, but if it gets annoying you can use
>> the suggestion by PA.
> 
> 
> Thanks, Rens. Lots of useful information!
> 
> Regarding output appearing multiple times, I realize it’s not tables that are the prime offender. It’s more when I’m outputting text, usually trying to get Python to generate LaTeX code, e.g., after symbolically solving a system of equations in Python.
> 
> Here’s an example:
> 
> #+begin_src python :results output replace raw 
> print("a")
> #+end_src
> 
> Every time I run this code block, I get another line containing “a”. If I don't use the raw option, e.g.,
> 
> #+begin_src python :results output
> print("a")
> #+end_src
> 
> the multiple-output problem goes away, but now it appears as 
> 
> #+RESULTS:
> : a
> 
> The extra “: “ interferes with LaTeX if I’ve just output something like “\begin{equation}”, which is why I’m using raw in the first place.
> 
> Wrapping the output in a LaTeX environment helps, e.g.,
> 
> #+begin_src python :results output raw :wrap flushleft
> print("a")
> #+end_src
> 
> But is there a “preferred” way to output arbitrary text (e.g., LaTeX equations) from Python code blocks so that they compile fine *and* don’t append?
> 
> Thanks for this discussion. This is about where I get to every time I think I want to use org mode to create LaTeX documents with embedded, live calculations, and then after wrestling with the headers for a while I tend to go back again to separate .py and .tex files controlled by GNU Make…

After a bit of experimentation, I think the solution is to put results in a drawer, e.g.,

#+begin_src python :results output raw drawer
print("a")
#+end_src

This produces

#+RESULTS:
:results:
a
:end:

This exports to LaTeX vey nicely and (I assume because it's obvious where the end is) org doesn’t over-write when you rerun the code block.

Just one more thing that might be helpful: I run various packages that fold and/or hide drawers because most of the time I don’t want to see them. But now I *do* want to see :results: drawers. So I created some functions (with the help of ChatGPT) to make sure :results: drawers are always visible:

——

(defun org-open-drawer-if-closed ()
  (interactive)
  "Open the drawer at point if it is closed."
  (when (and (looking-at org-drawer-regexp) (not (org-at-item-p)))
    (save-excursion
      (let ((element (org-element-at-point)))
        (when (eq (org-element-type element) 'drawer)
          (org-flag-drawer nil))))))


(defun my-org-unfold-results-drawers (&optional state)
  "Unfold all :results: drawers in the current buffer.
   STATE is ignored and is only present to match the signature for functions used in `org-cycle-hook`."
  (interactive)
  (save-excursion
    (goto-char (point-min))
    (while (re-search-forward "^[ \t]*:results:$" nil t)
      ;; Go to the beginning of the line with :results:
      (beginning-of-line)
      ;; Unfold the drawer using org-cycle
      (org-open-drawer-if-closed)
      ;; Move forward to avoid toggling the same drawer again
      (forward-line))))

(add-hook 'org-mode-hook
          (lambda ()
            (my-org-unfold-results-drawers)
            (add-hook 'org-cycle-hook #'my-org-unfold-results-drawers)))



——




[-- Attachment #2: Type: text/html, Size: 26470 bytes --]