* [BABEL][BUG] Tangle incorrect with variables
@ 2011-03-30 12:12 Rainer M Krug
2011-03-30 20:17 ` Eric Schulte
0 siblings, 1 reply; 5+ messages in thread
From: Rainer M Krug @ 2011-03-30 12:12 UTC (permalink / raw)
To: emacs-orgmode
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Hi
when I tangle this document, I get the results in the section below.
This is obviously not correct. This worked in an earlier version.
Any help appreciated,
Rainer
* Run script (./../nsa.sh)
:PROPERTIES:
:tangle: ./nsa.sh
:exports: code
:END:
** Update and call submit script
:PROPERTIES:
:ID: 173c527a-b032-4cc5-89d8-a32c3c0c7cae
:END:
#+BEGIN_SRC sh :var REV=(vc-working-revision (or (buffer-file-name)
org-current-export-file)) :var STATE=(vc-state (or (buffer-file-name)
org-current-export-file))
rm -rf ./R
rm -f ./spreadSim.sub
REVISION=$REV.$STATE
tar -xf nsa.$REVISION.tar.gz
$HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
"source('./R/generateLatinHypercubeScenarios.R'); doIt()"
for SCENARIO in ./R/scenarios/*.R; do
export SCENARIO=${SCENARIO#./R/scenarios/}
qsub nsa.sub
done
#+END_SRC
* tangled
#+begin_example
#!/bin/bash
REV=$(cat <<'BABEL_TABLE'
BABEL_TABLE
)
STATE=$(cat <<'BABEL_TABLE'
BABEL_TABLE
)
rm -rf ./R
rm -f ./spreadSim.sub
REVISION=$REV.$STATE
tar -xf nsa.$REVISION.tar.gz
$HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
"source('./R/generateLatinHypercubeScenarios.R'); doIt()"
for SCENARIO in ./R/scenarios/*.R; do
export SCENARIO=${SCENARIO#./R/scenarios/}
qsub nsa.sub
done
#+end_example
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa
Tel: +33 - (0)9 53 10 27 44
Cell: +27 - (0)8 39 47 90 42
Fax (SA): +27 - (0)8 65 16 27 82
Fax (D) : +49 - (0)3 21 21 25 22 44
Fax (FR): +33 - (0)9 58 10 27 44
email: Rainer@krugs.de
Skype: RMkrug
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^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [BABEL][BUG] Tangle incorrect with variables
2011-03-30 12:12 [BABEL][BUG] Tangle incorrect with variables Rainer M Krug
@ 2011-03-30 20:17 ` Eric Schulte
2011-03-31 6:53 ` Rainer M Krug
0 siblings, 1 reply; 5+ messages in thread
From: Eric Schulte @ 2011-03-30 20:17 UTC (permalink / raw)
To: Rainer M Krug; +Cc: emacs-orgmode
Hi Rainer,
When I tangle this code block (just slightly reformatted for my own
readability)
#+headers: :var STATE=(vc-state (or (buffer-file-name) org-current-export-file))
#+headers: :var REV=(vc-working-revision (or (buffer-file-name) org-current-export-file))
#+begin_src sh :tangle yes
rm -rf ./R
rm -f ./spreadSim.sub
REVISION=$REV.$STATE
tar -xf nsa.$REVISION.tar.gz
$HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
"source('./R/generateLatinHypercubeScenarios.R'); doIt()"
for SCENARIO in ./R/scenarios/*.R; do
export SCENARIO=${SCENARIO#./R/scenarios/}
qsub nsa.sub
done
#+end_src
I get the following tangled output
--8<---------------cut here---------------start------------->8---
REV=$(cat <<'BABEL_TABLE'
master
BABEL_TABLE
)
STATE=$(cat <<'BABEL_TABLE'
edited
BABEL_TABLE
)
rm -rf ./R
rm -f ./spreadSim.sub
REVISION=$REV.$STATE
tar -xf nsa.$REVISION.tar.gz
$HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
"source('./R/generateLatinHypercubeScenarios.R'); doIt()"
for SCENARIO in ./R/scenarios/*.R; do
export SCENARIO=${SCENARIO#./R/scenarios/}
qsub nsa.sub
done
--8<---------------cut here---------------end--------------->8---
Which looks right to me. Could it be something specific about your
setup which is causing this issue?
Cheers -- Eric
Rainer M Krug <r.m.krug@gmail.com> writes:
> Hi
>
> when I tangle this document, I get the results in the section below.
> This is obviously not correct. This worked in an earlier version.
>
> Any help appreciated,
>
> Rainer
>
>
> * Run script (./../nsa.sh)
> :PROPERTIES:
> :tangle: ./nsa.sh
> :exports: code
> :END:
> ** Update and call submit script
> :PROPERTIES:
> :ID: 173c527a-b032-4cc5-89d8-a32c3c0c7cae
> :END:
> #+BEGIN_SRC sh :var REV=(vc-working-revision (or (buffer-file-name)
> org-current-export-file)) :var STATE=(vc-state (or (buffer-file-name)
> org-current-export-file))
> rm -rf ./R
> rm -f ./spreadSim.sub
> REVISION=$REV.$STATE
> tar -xf nsa.$REVISION.tar.gz
> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
> for SCENARIO in ./R/scenarios/*.R; do
> export SCENARIO=${SCENARIO#./R/scenarios/}
> qsub nsa.sub
> done
> #+END_SRC
>
> * tangled
> #+begin_example
> #!/bin/bash
> REV=$(cat <<'BABEL_TABLE'
>
> BABEL_TABLE
> )
> STATE=$(cat <<'BABEL_TABLE'
>
> BABEL_TABLE
> )
> rm -rf ./R
> rm -f ./spreadSim.sub
> REVISION=$REV.$STATE
> tar -xf nsa.$REVISION.tar.gz
> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
> for SCENARIO in ./R/scenarios/*.R; do
> export SCENARIO=${SCENARIO#./R/scenarios/}
> qsub nsa.sub
> done
> #+end_example
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [BABEL][BUG] Tangle incorrect with variables
2011-03-30 20:17 ` Eric Schulte
@ 2011-03-31 6:53 ` Rainer M Krug
2011-03-31 16:00 ` Sébastien Vauban
0 siblings, 1 reply; 5+ messages in thread
From: Rainer M Krug @ 2011-03-31 6:53 UTC (permalink / raw)
To: Eric Schulte; +Cc: emacs-orgmode
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
On 30/03/11 22:17, Eric Schulte wrote:
> Hi Rainer,
>
> When I tangle this code block (just slightly reformatted for my own
> readability)
>
> #+headers: :var STATE=(vc-state (or (buffer-file-name) org-current-export-file))
> #+headers: :var REV=(vc-working-revision (or (buffer-file-name) org-current-export-file))
> #+begin_src sh :tangle yes
> rm -rf ./R
> rm -f ./spreadSim.sub
> REVISION=$REV.$STATE
> tar -xf nsa.$REVISION.tar.gz
> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
> for SCENARIO in ./R/scenarios/*.R; do
> export SCENARIO=${SCENARIO#./R/scenarios/}
> qsub nsa.sub
> done
> #+end_src
>
> I get the following tangled output
>
> --8<---------------cut here---------------start------------->8---
>
> REV=$(cat <<'BABEL_TABLE'
> master
> BABEL_TABLE
> )
> STATE=$(cat <<'BABEL_TABLE'
> edited
> BABEL_TABLE
> )
> rm -rf ./R
> rm -f ./spreadSim.sub
> REVISION=$REV.$STATE
> tar -xf nsa.$REVISION.tar.gz
> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
> for SCENARIO in ./R/scenarios/*.R; do
> export SCENARIO=${SCENARIO#./R/scenarios/}
> qsub nsa.sub
> done
> --8<---------------cut here---------------end--------------->8---
>
> Which looks right to me. Could it be something specific about your
> setup which is causing this issue?
Sorry - I did not relize that the way the variables are inserted has
changed - I should have tried the script before asking. It works fine.
Sorry about the noise.
By the way: using
#+headers:
makes the source look much nicer - never used it before, but will
definitely us it now.
Cheers,
Rainer
>
> Cheers -- Eric
>
> Rainer M Krug <r.m.krug@gmail.com> writes:
>
>> Hi
>>
>> when I tangle this document, I get the results in the section below.
>> This is obviously not correct. This worked in an earlier version.
>>
>> Any help appreciated,
>>
>> Rainer
>>
>>
>> * Run script (./../nsa.sh)
>> :PROPERTIES:
>> :tangle: ./nsa.sh
>> :exports: code
>> :END:
>> ** Update and call submit script
>> :PROPERTIES:
>> :ID: 173c527a-b032-4cc5-89d8-a32c3c0c7cae
>> :END:
>> #+BEGIN_SRC sh :var REV=(vc-working-revision (or (buffer-file-name)
>> org-current-export-file)) :var STATE=(vc-state (or (buffer-file-name)
>> org-current-export-file))
>> rm -rf ./R
>> rm -f ./spreadSim.sub
>> REVISION=$REV.$STATE
>> tar -xf nsa.$REVISION.tar.gz
>> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
>> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
>> for SCENARIO in ./R/scenarios/*.R; do
>> export SCENARIO=${SCENARIO#./R/scenarios/}
>> qsub nsa.sub
>> done
>> #+END_SRC
>>
>> * tangled
>> #+begin_example
>> #!/bin/bash
>> REV=$(cat <<'BABEL_TABLE'
>>
>> BABEL_TABLE
>> )
>> STATE=$(cat <<'BABEL_TABLE'
>>
>> BABEL_TABLE
>> )
>> rm -rf ./R
>> rm -f ./spreadSim.sub
>> REVISION=$REV.$STATE
>> tar -xf nsa.$REVISION.tar.gz
>> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
>> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
>> for SCENARIO in ./R/scenarios/*.R; do
>> export SCENARIO=${SCENARIO#./R/scenarios/}
>> qsub nsa.sub
>> done
>> #+end_example
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa
Tel: +33 - (0)9 53 10 27 44
Cell: +27 - (0)8 39 47 90 42
Fax (SA): +27 - (0)8 65 16 27 82
Fax (D) : +49 - (0)3 21 21 25 22 44
Fax (FR): +33 - (0)9 58 10 27 44
email: Rainer@krugs.de
Skype: RMkrug
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^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [BABEL][BUG] Tangle incorrect with variables
2011-03-31 6:53 ` Rainer M Krug
@ 2011-03-31 16:00 ` Sébastien Vauban
2011-04-01 16:07 ` Rainer M Krug
0 siblings, 1 reply; 5+ messages in thread
From: Sébastien Vauban @ 2011-03-31 16:00 UTC (permalink / raw)
To: emacs-orgmode-mXXj517/zsQ
Hi Rainer,
Rainer M Krug wrote:
>> I get the following tangled output
>>
>> --8<---------------cut here---------------start------------->8---
>>
>> REV=$(cat <<'BABEL_TABLE'
>> master
>> BABEL_TABLE
>> )
>> STATE=$(cat <<'BABEL_TABLE'
>> edited
>> BABEL_TABLE
>> )
>> rm -rf ./R
>> rm -f ./spreadSim.sub
>> REVISION=$REV.$STATE
>> tar -xf nsa.$REVISION.tar.gz
>> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
>> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
>> for SCENARIO in ./R/scenarios/*.R; do
>> export SCENARIO=${SCENARIO#./R/scenarios/}
>> qsub nsa.sub
>> done
>> --8<---------------cut here---------------end--------------->8---
>>
>> Which looks right to me. Could it be something specific about your
>> setup which is causing this issue?
>
> Sorry - I did not relize that the way the variables are inserted has
> changed - I should have tried the script before asking. It works fine.
For my own understanding, could you explicit what you consider as changed in
the way the variables are inserted?
Best regards,
Seb
--
Sébastien Vauban
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Re: [BABEL][BUG] Tangle incorrect with variables
2011-03-31 16:00 ` Sébastien Vauban
@ 2011-04-01 16:07 ` Rainer M Krug
0 siblings, 0 replies; 5+ messages in thread
From: Rainer M Krug @ 2011-04-01 16:07 UTC (permalink / raw)
To: Sébastien Vauban; +Cc: emacs-orgmode
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
On 03/31/2011 06:00 PM, Sébastien Vauban wrote:
> Hi Rainer,
>
> Rainer M Krug wrote:
>>> I get the following tangled output
>>>
>>> --8<---------------cut here---------------start------------->8---
>>>
>>> REV=$(cat <<'BABEL_TABLE'
>>> master
>>> BABEL_TABLE
>>> )
>>> STATE=$(cat <<'BABEL_TABLE'
>>> edited
>>> BABEL_TABLE
>>> )
>>> rm -rf ./R
>>> rm -f ./spreadSim.sub
>>> REVISION=$REV.$STATE
>>> tar -xf nsa.$REVISION.tar.gz
>>> $HOME/R/R/R-2.12.0/bin/Rscript --vanilla -e
>>> "source('./R/generateLatinHypercubeScenarios.R'); doIt()"
>>> for SCENARIO in ./R/scenarios/*.R; do
>>> export SCENARIO=${SCENARIO#./R/scenarios/}
>>> qsub nsa.sub
>>> done
>>> --8<---------------cut here---------------end--------------->8---
>>>
>>> Which looks right to me. Could it be something specific about your
>>> setup which is causing this issue?
>>
>> Sorry - I did not relize that the way the variables are inserted has
>> changed - I should have tried the script before asking. It works fine.
>
> For my own understanding, could you explicit what you consider as changed in
> the way the variables are inserted?
It simply read:
REV=69
STATE=edited
Rainer
>
> Best regards,
> Seb
>
- --
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation
Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch University
Main Campus, Merriman Avenue
Stellenbosch
South Africa
Tel: +33 - (0)9 53 10 27 44
Cell: +27 - (0)8 39 47 90 42
Fax (SA): +27 - (0)8 65 16 27 82
Fax (D) : +49 - (0)3 21 21 25 22 44
Fax (FR): +33 - (0)9 58 10 27 44
email: Rainer@krugs.de
Skype: RMkrug
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^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2011-04-01 16:57 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz follow: Atom feed
-- links below jump to the message on this page --
2011-03-30 12:12 [BABEL][BUG] Tangle incorrect with variables Rainer M Krug
2011-03-30 20:17 ` Eric Schulte
2011-03-31 6:53 ` Rainer M Krug
2011-03-31 16:00 ` Sébastien Vauban
2011-04-01 16:07 ` Rainer M Krug
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