From mboxrd@z Thu Jan  1 00:00:00 1970
From: "Doyley, Marvin M." <m.doyley@rochester.edu>
Subject: Re: New markup for revising manuscripts
Date: Mon, 13 Mar 2017 17:25:44 +0000
Message-ID: <30057CD2-C4B3-4C69-B807-2D6D5F3FDECF@ur.rochester.edu>
Mime-Version: 1.0
Content-Type: multipart/signed;
	boundary="Apple-Mail=_9081D086-56D6-4783-B29E-6B374EC3C302";
	protocol="application/pgp-signature"; micalg=pgp-sha512
Return-path: <emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org>
Received: from eggs.gnu.org ([2001:4830:134:3::10]:58310)
	by lists.gnu.org with esmtp (Exim 4.71)
	(envelope-from <m.doyley@rochester.edu>) id 1cnTjE-00082G-QX
	for emacs-orgmode@gnu.org; Mon, 13 Mar 2017 13:25:54 -0400
Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71)
	(envelope-from <m.doyley@rochester.edu>) id 1cnTj9-0006IU-O4
	for emacs-orgmode@gnu.org; Mon, 13 Mar 2017 13:25:52 -0400
Received: from mail-sn1nam02on0123.outbound.protection.outlook.com
	([104.47.36.123]:56768
	helo=NAM02-SN1-obe.outbound.protection.outlook.com)
	by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_256_CBC_SHA1:32)
	(Exim 4.71) (envelope-from <m.doyley@rochester.edu>)
	id 1cnTj9-0006ID-Bh
	for emacs-orgmode@gnu.org; Mon, 13 Mar 2017 13:25:47 -0400
Content-Language: en-US
List-Id: "General discussions about Org-mode." <emacs-orgmode.gnu.org>
List-Unsubscribe: <https://lists.gnu.org/mailman/options/emacs-orgmode>,
	<mailto:emacs-orgmode-request@gnu.org?subject=unsubscribe>
List-Archive: <http://lists.gnu.org/archive/html/emacs-orgmode/>
List-Post: <mailto:emacs-orgmode@gnu.org>
List-Help: <mailto:emacs-orgmode-request@gnu.org?subject=help>
List-Subscribe: <https://lists.gnu.org/mailman/listinfo/emacs-orgmode>,
	<mailto:emacs-orgmode-request@gnu.org?subject=subscribe>
Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org
Sender: "Emacs-orgmode"
	<emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org>
To: Eric S Fraga <e.fraga@ucl.ac.uk>
Cc: "emacs-orgmode@gnu.org" <emacs-orgmode@gnu.org>, John Kitchin <jkitchin@andrew.cmu.edu>

--Apple-Mail=_9081D086-56D6-4783-B29E-6B374EC3C302
Content-Type: multipart/alternative;
	boundary="Apple-Mail=_9388BE24-062F-4D46-8332-4E770B76FB79"


--Apple-Mail=_9388BE24-062F-4D46-8332-4E770B76FB79
Content-Transfer-Encoding: quoted-printable
Content-Type: text/plain;
	charset=us-ascii

Hi Eric,

I really appreciate this. I will try it out too.

Cheers,
M
On Friday, 10 Mar 2017 at 20:33, Doyley, Marvin M. wrote:
> Hi there,
>
> When revising manuscripts, I usually highlight the changes (response
> to reviewer) in red. I use typically do this as follows:
> (1) #+latex_header: \newcommand{\response}[1]{\textcolor{red}{#1}}
> (2) \response{changes)
>
> Is there a more elegant way to do this ?

I don't know about elegant but my approach is to subvert the +...+
emphasis markers.  These usually indicate strike-through, something I
never use.  Instead, I have +some text+ be highlighted and exported to
LaTeX and HTML as such.

To achieve this, I customise a number org variables.  It took me some
time to find how I actually did this as it's been part of my org setup
for years, so much so that I almost thought it was default behaviour!
In any case, the following is an elided extract from my customised
variables:

#+begin_src emacs-lisp
  (custom-set-variables
   '(org-emphasis-alist
     (quote
      (("*" bold)
       ("/" italic)
       ("_" underline)
       ("=3D" org-verbatim verbatim)
       ("~" org-code verbatim)
       ("+" highlight))))
   '(org-html-text-markup-alist
     (quote
      ((bold . "<b>%s</b>")
       (code . "<code>%s</code>")
       (italic . "<i>%s</i>")
       (strike-through . "<span style=3D\"background-color: =
#ffff80;\">%s</span>")
       (underline . "<span class=3D\"underline\">%s</span>")
       (verbatim . "<code>%s</code>"))))
   '(org-latex-text-markup-alist
     (quote
      ((bold . "\\textbf{%s}")
       (code . protectedtexttt)
       (italic . "\\emph{%s}")
       (strike-through . "\\hl{%s}")
       (underline . "\\uline{%s}")
       (verbatim . protectedtexttt)))))
#+end_src

There are basically copies of the defaults with the strike-through
element changed.

Now I can write +highlighted text+ which appears as you wish in both
HTML and LaTeX exports as well as on the screen (customise the highlight
face to get what you want on screen).  For LaTeX, you also have to

  (add-to-list 'org-latex-packages-alist '("" "soul"))


--Apple-Mail=_9388BE24-062F-4D46-8332-4E770B76FB79
Content-Transfer-Encoding: 7bit
Content-Type: text/html;
	charset=us-ascii

<html><head><meta http-equiv="Content-Type" content="text/html charset=us-ascii"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class=""><pre class="">Hi Eric,</pre><pre class=""><br class=""></pre><pre class="">I really appreciate this. I will try it out too.</pre><pre class=""><br class=""></pre><pre class="">Cheers,</pre><pre class="">M</pre><pre class="">On Friday, 10 Mar 2017 at 20:33, Doyley, Marvin M. wrote:
&gt;<i class=""> Hi there,</i>
&gt;<i class=""></i>
&gt;<i class=""> When revising manuscripts, I usually highlight the changes (response</i>
&gt;<i class=""> to reviewer) in red. I use typically do this as follows:</i>
&gt;<i class=""> (1) #+latex_header: \newcommand{\response}[1]{\textcolor{red}{#1}}</i>
&gt;<i class=""> (2) \response{changes)</i>
&gt;<i class=""></i>
&gt;<i class=""> Is there a more elegant way to do this ?</i>

I don't know about elegant but my approach is to subvert the +...+
emphasis markers.  These usually indicate strike-through, something I
never use.  Instead, I have +some text+ be highlighted and exported to
LaTeX and HTML as such.

To achieve this, I customise a number org variables.  It took me some
time to find how I actually did this as it's been part of my org setup
for years, so much so that I almost thought it was default behaviour!
In any case, the following is an elided extract from my customised
variables:

#+begin_src emacs-lisp
  (custom-set-variables
   '(org-emphasis-alist
     (quote
      (("*" bold)
       ("/" italic)
       ("_" underline)
       ("=" org-verbatim verbatim)
       ("~" org-code verbatim)
       ("+" highlight))))
   '(org-html-text-markup-alist
     (quote
      ((bold . "&lt;b&gt;%s&lt;/b&gt;")
       (code . "&lt;code&gt;%s&lt;/code&gt;")
       (italic . "&lt;i&gt;%s&lt;/i&gt;")
       (strike-through . "&lt;span style=\"background-color: #ffff80;\"&gt;%s&lt;/span&gt;")
       (underline . "&lt;span class=\"underline\"&gt;%s&lt;/span&gt;")
       (verbatim . "&lt;code&gt;%s&lt;/code&gt;"))))
   '(org-latex-text-markup-alist
     (quote
      ((bold . "<a href="smb://textbf" class="">\\textbf</a>{%s}")
       (code . protectedtexttt)
       (italic . "<a href="smb://emph" class="">\\emph</a>{%s}")
       (strike-through . "<a href="smb://hl" class="">\\hl</a>{%s}")
       (underline . "<a href="smb://uline" class="">\\uline</a>{%s}")
       (verbatim . protectedtexttt)))))
#+end_src 

There are basically copies of the defaults with the strike-through
element changed.

Now I can write +highlighted text+ which appears as you wish in both
HTML and LaTeX exports as well as on the screen (customise the highlight
face to get what you want on screen).  For LaTeX, you also have to

  (add-to-list 'org-latex-packages-alist '("" "soul"))
</pre><div class=""><br class=""></div></body></html>
--Apple-Mail=_9388BE24-062F-4D46-8332-4E770B76FB79--

--Apple-Mail=_9081D086-56D6-4783-B29E-6B374EC3C302
Content-Transfer-Encoding: 7bit
Content-Disposition: attachment;
	filename=signature.asc
Content-Type: application/pgp-signature;
	name=signature.asc
Content-Description: Message signed with OpenPGP using GPGMail

-----BEGIN PGP SIGNATURE-----
Comment: GPGTools - https://gpgtools.org

iQEcBAEBCgAGBQJYxtYXAAoJEMSux/2CXSY9VioH/R1AswMc/QjT2Jb2cD2ckvjG
jYlPterzYf4eYTuWLRvTb8IwH9OeiuOZ05YRFVQVz/4PRCHE8QZ6Sck1ziL3jocA
R59Vl3ywN33WTY37+jPTopTdA1mZEHMt0nnfOekk8IGdKGfM0u38wKZal3/YgYeQ
OIHEXmPaymmeL5veL6MRDMcULkSlNa9dNrDS2OKs67rMduUUHBmRb35L6Prc4x53
Z3SDi+oM4GAcYhfCLsNQovnUYCfeoff3O3klOuiYugWAN9Q9Ym22CEJrLmwqiCaV
gOnmZWKTTs+ktaG4T8pE691FsignpoDvQ72/sKjfWyez+3pe+atmbBfcXIs5cwI=
=+5Sy
-----END PGP SIGNATURE-----

--Apple-Mail=_9081D086-56D6-4783-B29E-6B374EC3C302--