Hi.

I've just migrated from org-annotation-helper to org-protocol and I've
managed to adapt the hints from
http://article.gmane.org/gmane.emacs.orgmode/6810 to org-protocol.

It's simple, you just change the protocol accordingly, and call
encodeURIComponent, so you arrive with:

app.addMenuItem({cName:"org-store-link", cParent:"Tools",
   cExec:"app.launchURL('org-protocol://store-link://' +
   encodeURIComponent(this.URL) + '/' +
   encodeURIComponent(this.info.Title));"});

for org-store-link and

app.addMenuItem({cName:"org-remember", cParent:"Tools",
   cExec:"app.launchURL('org-protocol://remember://' +
   encodeURIComponent(this.URL) + '/' +
   encodeURIComponent(this.info.Title) + '/');"});

or org-remember.

Drop these into ~/.adobe/Acrobat/9.0/JavaScripts and you should be
good to go.

Note that modern emacsen also are able to display pdfs and
org-store-link will already come up with a valid file:// link, but
doesn't give you the document title, so this might be convenient, even
if you prefer to open links to pdf files in emacs.

Kind regards
     FDF
-- 
        Friedrich Delgado Friedrichs <friedel@nomaden.org>
Laziness led to the invention of the most useful tools.