* [Babel] R, multiple lines #+results, LaTeX-export
@ 2010-12-03 0:22 Bernd Weiss
2010-12-03 8:41 ` Sébastien Vauban
2010-12-03 14:14 ` Eric Schulte
0 siblings, 2 replies; 7+ messages in thread
From: Bernd Weiss @ 2010-12-03 0:22 UTC (permalink / raw)
To: emacs-orgmode
Dear all,
While working on my presentation I came across the following two issues:
(1) If I execute the following code block (see "Before codeblock
execution") which is followed by a headline or another codeblock, the
results-block (see "After codeblock execution") interferes with the
headline/codeblock/whatever.
(2) The results-block is complex insofar as it has multiple lines. If I
choose "export as LaTeX and process to PDF" (I corrected the wrong
#+end_example line manually), the resulting PDF file only shows the code
but not the results. However, this behaviour is only related to my
meta-analysis example. If I use, for example, summary(lm(rnorm(100)~1)),
the resulting PDF file shows code + results.
I am using Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
Thanks for your help,
Bernd
------- Before codeblock execution ---------
#+BEGIN_SRC R :results output :exports both
library(meta)
data(Fleiss93)
meta1 <- metabin(event.e, n.e, event.c, n.c, data=Fleiss93, sm="RR",
meth="I")
summary(meta1)
#+END_SRC
* new headline
------- Before codeblock execution ---------
------- After codeblock execution ---------
#+BEGIN_SRC R :results output :exports both
library(meta)
data(Fleiss93)
meta1 <- metabin(event.e, n.e, event.c, n.c, data=Fleiss93, sm="RR",
meth="I")
summary(meta1)
#+END_SRC
#+results:
#+begin_example
load meta: d:/programme/R/library ...
Number of trials combined: 7
RR 95%-CI z p.value
Fixed effect model 0.9137 [0.8658; 0.9643] -3.2822 0.001
Random effects model 0.8929 [0.8006; 0.9959] -2.0347 0.0419
Quantifying heterogeneity:
tau^2 = 0.0074; H = 1.29 [1; 1.98]; I^2 = 39.6% [0%; 74.6%]
Test of heterogeneity:
Q d.f. p.value
9.93 6 0.1277
Method: Inverse variance method
* new headlin#+end_example
e
------- After codeblock execution ---------
^ permalink raw reply [flat|nested] 7+ messages in thread* Re: [Babel] R, multiple lines #+results, LaTeX-export
2010-12-03 0:22 [Babel] R, multiple lines #+results, LaTeX-export Bernd Weiss
@ 2010-12-03 8:41 ` Sébastien Vauban
2010-12-03 10:12 ` Bernd Weiss
2010-12-03 14:14 ` Eric Schulte
1 sibling, 1 reply; 7+ messages in thread
From: Sébastien Vauban @ 2010-12-03 8:41 UTC (permalink / raw)
To: emacs-orgmode-mXXj517/zsQ
Hi Bernd,
Bernd Weiss wrote:
> (1) If I execute the following code block (see "Before codeblock
> execution") which is followed by a headline or another codeblock, the
> results-block (see "After codeblock execution") interferes with the
> headline/codeblock/whatever.
Same thing just reported by Eric (12 min before you), and experienced by me as
well.
> (2) The results-block is complex insofar as it has multiple lines. If I
> choose "export as LaTeX and process to PDF" (I corrected the wrong
> #+end_example line manually), the resulting PDF file only shows the code
> but not the results. However, this behaviour is only related to my
> meta-analysis example. If I use, for example, summary(lm(rnorm(100)~1)),
> the resulting PDF file shows code + results.
>
> I am using Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
That sounds weird to me: version 7.3 and a 7.01 tag!?
Best regards,
Seb
--
Sébastien Vauban
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^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Re: [Babel] R, multiple lines #+results, LaTeX-export
2010-12-03 8:41 ` Sébastien Vauban
@ 2010-12-03 10:12 ` Bernd Weiss
2010-12-03 15:05 ` Nick Dokos
0 siblings, 1 reply; 7+ messages in thread
From: Bernd Weiss @ 2010-12-03 10:12 UTC (permalink / raw)
To: emacs-orgmode
Am 03.12.2010 03:41, schrieb Sébastien Vauban:
[...]
>> I am using Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
>
> That sounds weird to me: version 7.3 and a 7.01 tag!?
Hi Sébastien,
That's what I get when I run "Show Version":
release_7.01h-1081-gcfd7
Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
Bernd
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Re: [Babel] R, multiple lines #+results, LaTeX-export
2010-12-03 10:12 ` Bernd Weiss
@ 2010-12-03 15:05 ` Nick Dokos
2010-12-03 16:26 ` Bernd Weiss
0 siblings, 1 reply; 7+ messages in thread
From: Nick Dokos @ 2010-12-03 15:05 UTC (permalink / raw)
To: Bernd Weiss; +Cc: nicholas.dokos, emacs-orgmode
Bernd Weiss <bernd.weiss@uni-koeln.de> wrote:
> Am 03.12.2010 03:41, schrieb S=C3=A9bastien Vauban:
>
> [...]
>
> >> I am using Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
> >
> > That sounds weird to me: version 7.3 and a 7.01 tag!?
>
> Hi S=C3=A9bastien,
>
> That's what I get when I run "Show Version":
>
> release_7.01h-1081-gcfd7
> Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
>
>
You are probably missing the 7.3 tag, so it has to go back all the
way to 7.01h to find a starting point: you are 1081 commits past 7.01h.
Mine says
Org-mode version 7.3 (release_7.3.148.gc3b7e.dirty)
so I'm 148 commits past 7.3, so I'd expect roughly 930 commits between
7.01h and 7.3 (roughly, because we probably don't have the same HEAD). I
get
$ git log --oneline release_7.01h..release_7.3 | wc -l
917
so it checks out.
Do ``git tag'' to make sure the relase_7.3 tag is missing. Then do ``git
fetch --tags'' and check with ``git tag'' again. If the tag shows up,
org-version should then show you 7.3 as the starting point.
Nick
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: Re: [Babel] R, multiple lines #+results, LaTeX-export
2010-12-03 15:05 ` Nick Dokos
@ 2010-12-03 16:26 ` Bernd Weiss
0 siblings, 0 replies; 7+ messages in thread
From: Bernd Weiss @ 2010-12-03 16:26 UTC (permalink / raw)
To: nicholas.dokos; +Cc: emacs-orgmode
Am 03.12.2010 10:05, schrieb Nick Dokos:
> Bernd Weiss<bernd.weiss@uni-koeln.de> wrote:
>
>> Am 03.12.2010 03:41, schrieb S=C3=A9bastien Vauban:
>>
>> [...]
>>
>>>> I am using Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
>>>
>>> That sounds weird to me: version 7.3 and a 7.01 tag!?
>>
>> Hi S=C3=A9bastien,
>>
>> That's what I get when I run "Show Version":
>>
>> release_7.01h-1081-gcfd7
>> Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
>>
>>
>
> You are probably missing the 7.3 tag, so it has to go back all the
> way to 7.01h to find a starting point: you are 1081 commits past 7.01h.
> Mine says
>
> Org-mode version 7.3 (release_7.3.148.gc3b7e.dirty)
>
> so I'm 148 commits past 7.3, so I'd expect roughly 930 commits between
> 7.01h and 7.3 (roughly, because we probably don't have the same HEAD). I
> get
>
> $ git log --oneline release_7.01h..release_7.3 | wc -l
> 917
>
> so it checks out.
>
> Do ``git tag'' to make sure the relase_7.3 tag is missing. Then do ``git
> fetch --tags'' and check with ``git tag'' again. If the tag shows up,
> org-version should then show you 7.3 as the starting point.
>
> Nick
Hi Nick,
Thanks! "git fetch --tags" was what I was missing. I simply (naively?)
assumed that "git pull origin master" would be sufficient.
Bernd
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: [Babel] R, multiple lines #+results, LaTeX-export
2010-12-03 0:22 [Babel] R, multiple lines #+results, LaTeX-export Bernd Weiss
2010-12-03 8:41 ` Sébastien Vauban
@ 2010-12-03 14:14 ` Eric Schulte
2010-12-03 14:45 ` Bernd Weiss
1 sibling, 1 reply; 7+ messages in thread
From: Eric Schulte @ 2010-12-03 14:14 UTC (permalink / raw)
To: Bernd Weiss; +Cc: emacs-orgmode
Hi Bernd,
Bernd Weiss <bernd.weiss@uni-koeln.de> writes:
> Dear all,
>
> While working on my presentation I came across the following two issues:
>
> (1) If I execute the following code block (see "Before codeblock
> execution") which is followed by a headline or another codeblock, the
> results-block (see "After codeblock execution") interferes with the
> headline/codeblock/whatever.
>
I've just pushed up a fix for this issue.
>
> (2) The results-block is complex insofar as it has multiple lines. If I
> choose "export as LaTeX and process to PDF" (I corrected the wrong
> #+end_example line manually), the resulting PDF file only shows the code
> but not the results. However, this behaviour is only related to my
> meta-analysis example. If I use, for example, summary(lm(rnorm(100)~1)),
> the resulting PDF file shows code + results.
>
> I am using Org-mode version 7.3 (release_7.01h.1081.gcfd7.dirty)
>
> Thanks for your help,
>
This is odd, could you send a self-contained org-mode file which
reproduces this error?
Thanks -- Eric
>
> Bernd
>
>
> ------- Before codeblock execution ---------
>
> #+BEGIN_SRC R :results output :exports both
> library(meta)
> data(Fleiss93)
> meta1 <- metabin(event.e, n.e, event.c, n.c, data=Fleiss93, sm="RR",
> meth="I")
> summary(meta1)
> #+END_SRC
>
>
>
>
> * new headline
>
> ------- Before codeblock execution ---------
>
>
>
> ------- After codeblock execution ---------
>
> #+BEGIN_SRC R :results output :exports both
> library(meta)
> data(Fleiss93)
> meta1 <- metabin(event.e, n.e, event.c, n.c, data=Fleiss93, sm="RR",
> meth="I")
> summary(meta1)
> #+END_SRC
>
>
> #+results:
> #+begin_example
> load meta: d:/programme/R/library ...
> Number of trials combined: 7
>
> RR 95%-CI z p.value
> Fixed effect model 0.9137 [0.8658; 0.9643] -3.2822 0.001
> Random effects model 0.8929 [0.8006; 0.9959] -2.0347 0.0419
>
> Quantifying heterogeneity:
> tau^2 = 0.0074; H = 1.29 [1; 1.98]; I^2 = 39.6% [0%; 74.6%]
>
> Test of heterogeneity:
> Q d.f. p.value
> 9.93 6 0.1277
>
> Method: Inverse variance method
>
>
>
> * new headlin#+end_example
> e
>
> ------- After codeblock execution ---------
>
> _______________________________________________
> Emacs-orgmode mailing list
> Please use `Reply All' to send replies to the list.
> Emacs-orgmode@gnu.org
> http://lists.gnu.org/mailman/listinfo/emacs-orgmode
^ permalink raw reply [flat|nested] 7+ messages in thread
* Re: [Babel] R, multiple lines #+results, LaTeX-export
2010-12-03 14:14 ` Eric Schulte
@ 2010-12-03 14:45 ` Bernd Weiss
0 siblings, 0 replies; 7+ messages in thread
From: Bernd Weiss @ 2010-12-03 14:45 UTC (permalink / raw)
To: Eric Schulte; +Cc: emacs-orgmode
Am 03.12.2010 09:14, schrieb Eric Schulte:
> Hi Bernd,
>
> Bernd Weiss<bernd.weiss@uni-koeln.de> writes:
[...]
>> (2) The results-block is complex insofar as it has multiple lines. If I
>> choose "export as LaTeX and process to PDF" (I corrected the wrong
>> #+end_example line manually), the resulting PDF file only shows the code
>> but not the results. However, this behaviour is only related to my
>> meta-analysis example. If I use, for example, summary(lm(rnorm(100)~1)),
>> the resulting PDF file shows code + results.
[...]
> This is odd, could you send a self-contained org-mode file which
> reproduces this error?
Hi Eric,
I just updated my org-mode repository and now everything works fine.
Thanks a lot,
Bernd
^ permalink raw reply [flat|nested] 7+ messages in thread
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2010-12-03 0:22 [Babel] R, multiple lines #+results, LaTeX-export Bernd Weiss
2010-12-03 8:41 ` Sébastien Vauban
2010-12-03 10:12 ` Bernd Weiss
2010-12-03 15:05 ` Nick Dokos
2010-12-03 16:26 ` Bernd Weiss
2010-12-03 14:14 ` Eric Schulte
2010-12-03 14:45 ` Bernd Weiss
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