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List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Cc: org-mode-email , Ivan Tadeu Ferreira Antunes Filho Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: "Emacs-orgmode" X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1638466846; h=from:from:sender:sender:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references:list-id:list-help: list-unsubscribe:list-subscribe:list-post:dkim-signature; bh=sy0Ff7lsE8kpOH73yCgtESEr3572KquBfH8DtIjFX5E=; b=ViQ3uidzQYtk8PDcrwUTtA+66wKHOOFoic474Pri5AzCZ+ZsPAHrK6cQ0zrjHf3SKwLEy2 KvZh9iB7HKK3+5fs6q44Rqj8+e48N/DhV5Uz2KuM8dC9kQIbt8muj4Yk/v/3teK02MJn1I JA6yU4xy+m3wr16Z3lz7GmCeRDwDbPiT8dTN6ApBzkNts6flZOTyXKDFUaYd2eAjefbRHd gTNpOdlTzZTluBkMcvqMjgEUpwZxd4CzH0iBXfiks7qDtPeTDOU6Nfa/UZQeu6XvRAgs55 WGdLxj1bPBWuF3F2ck6n7i95id3EOvrmCaWJ9RrTYR0TdFeqE4Jtq2hCMIn+Pw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1638466846; a=rsa-sha256; cv=none; b=nBrUGc8D5smtu3xu1wIBufkWhF2dLi4yfBt1Xez5atIBfBdwRTpI4O+p2RA2ufazuyRY8I /mTEW1YgrfoOEwT9ak2A7miCJhGaeWt5mWPoom0f2PAPRpkRNfnZ31ut0fK342hSESieNr 0FOPuxVf8RHhYH6OGUTddaW4ndIjjG2ycHcvh0FEgM05LkNo9xIZ8tfSB9qBhAYNpsDhu4 imje8Zb8BcfWnjrGMQV1y0ydO5VdUISWm4T5Fingd6vCsTz3KOp9mlv/a3Pd0eHUPLVltn Db4fMbOZwP+0/zJQ2LbsoBgiptQzS3vIpXpBJlBTLnKve80rBnwlRJp2X+rYAg== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=embKUpjJ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=andrew.cmu.edu (policy=none); spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -1.82 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=gmail.com header.s=20210112 header.b=embKUpjJ; dmarc=fail reason="SPF not aligned (relaxed)" header.from=andrew.cmu.edu (policy=none); spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: 1F489261D6 X-Spam-Score: -1.82 X-Migadu-Scanner: scn0.migadu.com X-TUID: 3W+ds1b0i0GB Glad to hear it is working again for you! Best wishes, Joseph Vidal-Rosset writes: > Dear all, > > > I just succeeded in solving my problem. > > l-210-235 of myblogexporter.el, I changed the code for: > > (defun org-export-head-export-headers (directory-name backend) > "Exports each heading to directory-name using backend" > (if (equal backend "html") > (org-export-head--run-on-each-heading > #'(lambda () > (org-set-property > "EXPORT_FILE_NAME" > (concat directory-name (org-export-head--escaped-headline))) > (deactivate-mark) > (let ((org-export-before-parsing-hook > '(org-ref-csl-preprocess-buffer))) > (cl-letf (((symbol-function 'org-export-get-reference) > (symbol-function 'org-export-get-reference-custom))) > (if org-export-head-click-toc-h2 > (cl-letf (( > ;(symbol-function 'org-html-toc) > (symbol-function > 'org-export-head--custom-toc))) > (org-html-export-to-html nil t))))) > (set-buffer-modified-p t)) "-noexport-noreexport")) > (if (equal backend "pdf") > (org-export-head--run-on-each-heading > #'(lambda () > (org-set-property > "EXPORT_FILE_NAME" > (concat directory-name (org-export-head--escaped-headline))) > (deactivate-mark) > (org-latex-export-to-pdf nil t) > (set-buffer-modified-p t)) "-noexport-noreexport"))) > > and it works with org-ref 3. > > Best wishes, I attach myblogexporter.el > > Jo. > > Le 02/12/2021 =C3=A0 14:17, Joseph Vidal-Rosset a =C3=A9crit=C2=A0: >> Dear John (cc. Ivan), >> >> First, thanks for your help and for your patience, that's very kind of y= ou. >> >> The good news is that indeed, org-ref 3 exports nicely the html >> bibliography with my CSL file, it works well with your org file and your >> bibliography. My error was simple: I did not use the specific org-ref >> keys but the ordinary h-o keys.. A stupid mistake. >> >> The bad news is that this new function for exporting with org-ref 3 is >> not included in org-export-head, a nice org mode to blog exporter, made >> by Ivan Tadeu Ferreira Antunes Filho, which converts each header to a >> different file, I find this exporter very convenient. I had no problem >> with this org-ref 2 to use this blog-exporter, but it org-ref 3 is >> unfortunately not still adapted to its use. Nevertheless, I believe that >> it should be possible to find the lines to include this function >> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer))) >> (org-open-file (org-html-export-to-html))) >> in org-export-head. I tried, but without success, because I am simply >> not expert enough. I see the best, that is to export both with org-ref 3 >> (i.e. "r h") and org-export-head, but I am unable to code it. >> >> No doubt that it should be for you and Ivan a piece of cake, but please >> do it only if you think that it is interesting and if you find the time >> to do it. >> >> Best wishes, >> >> Jo. >> >> PS in attachment, myblogexporter.el in my ~/.emacs.d/personal (usual >> path with Prelude Emacs). >> >> Le 01/12/2021 =C3=A0 23:16, John Kitchin a =C3=A9crit=C2=A0: >>> >>> Joseph Vidal-Rosset writes: >>> >>>> Dear Andras, >>>> >>>> You are very probably right. I will have a look on this entry in my >>>> default bibliography file. >>>> >>>> The code >>>> >>>> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buffer= ))) >>>> (org-open-file (org-html-export-to-html))) >>>> >>>> put in .emacs.d/personal/preload/myorgexport.el >>>> >>> This code should not go in your init file. It is executed each time, and >>> not what you want. I usually put it a src block at the end in a section >>> tagged noexport and run it from there. >>> >>> Alternatively, if this is the only preprocessing you do, I think you can >>> do C-c C-e rh to export to html (this runs the org-ref html exporter. >>> >>> Finally, if you really want something in your init file it should be >>> like this: >>> >>> (defun my-html () >>> (interactive) >>> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buf= fer))) >>> (org-open-file (org-html-export-to-html)))) >>> >>> and then later you run it with M-x my-html >>> >>> >>>> provokes the request of opening a html file, when emacs --daemon is >>>> started; therefore I conclude that it should not be used as I did... >>>> >>>> Anyway, every tentative to export in a bibliography in html fails at >>>> the moment, even with a new bibliography file... :( >>> >>> See of the one at >>> https://github.com/jkitchin/org-ref/blob/master/examples/basic-csl.org >>> works. The bib file is in >>> https://github.com/jkitchin/org-ref/blob/master/org-ref.bib. >>> >>> >>> >>>> >>>> Best wishes, >>>> >>>> Le 01/12/2021 =C3=A0 17:33, Andr=C3=A1s Simonyi a =C3=A9crit=C2=A0: >>>>> Dear Joseph, >>>>> >>>>> based on the error message there seems to be a problem with the >>>>> 'curley-nil-on-bennet-spinoz' bibliography entry, is it possible that >>>>> it contains a 'year =3D nil' row? If yes then I don't think that is >>>>> well-formed, at least citeproc-el cannot currently parse it. Anyhow, >>>>> apparently I need to improve/add citeproc-el error messages about >>>>> bib(la)tex parsing, because several parsing problems have surfaced >>>>> lately and the current error messages aren't helpful at all. >>>>> >>>>> best wishes, >>>>> Andr=C3=A1s >>>>> >>>>> On Wed, 1 Dec 2021 at 16:50, Joseph Vidal-Rosset >>>>> wrote: >>>>>> >>>>>> Dear John, >>>>>> >>>>>> I must say that to export references in html with org-ref 3, I meet a >>>>>> lot of problems (with LaTeX, it's fine). >>>>>> >>>>>> I am using prelude emacs and GNU Emacs 29.0.50 . >>>>>> >>>>>> Starting emacs --daemon, the code >>>>>> >>>>>> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buff= er))) >>>>>> (org-open-file (org-html-export-to-html))) >>>>>> >>>>>> in my setup provokes this unwanting effect: >>>>>> >>>>>> [Prelude] Loading personal configuration files in >>>>>> /home/joseph/.emacs.d/personal/preload... >>>>>> Loading /home/joseph/.emacs.d/personal/preload/myorgexport.el (sourc= e)... >>>>>> Output file: >>>>>> >>>>>> and with Enter : >>>>>> >>>>>> [Prelude] Loading personal configuration files in >>>>>> /home/joseph/.emacs.d/personal/preload... >>>>>> Loading /home/joseph/.emacs.d/personal/preload/myorgexport.el (sourc= e)... >>>>>> Output file: >>>>>> Warning (initialization): An error occurred while loading >>>>>> =E2=80=98/home/joseph/.emacs.d/init.el=E2=80=99: >>>>>> >>>>>> Wrong type argument: stringp, nil >>>>>> >>>>>> To ensure normal operation, you should investigate and remove the >>>>>> cause of the error in your initialization file. Start Emacs with >>>>>> the =E2=80=98--debug-init=E2=80=99 option to view a complete error b= acktrace. Disable >>>>>> showing Disable logging >>>>>> Starting Emacs daemon. >>>>>> >>>>>> With --debug-init, I get: >>>>>> >>>>>> Debugger entered--Lisp error: (wrong-type-argument stringp nil) >>>>>> string-to-number(nil) >>>>>> citeproc-bt--to-csl-date("nil" nil) >>>>>> citeproc-blt-entry-to-csl((("Url" . >>>>>> "http://dx.doi.org/10.1163/9789004246638_005") ("Doi" . >>>>>> "10.1163/9789004246638_005") ("Date_added" . "Mon May 16 19:09:37 20= 16") >>>>>> ("Booktitle" . "Spinoza: Issues and Directions") ("Series" . "Spinoz= a: >>>>>> Issues and Directions") ("Year" . "nil") ("Publisher" . "Brill Acade= mic >>>>>> Publishers") ("Pages" . "39-52") ("Author" . "Edwin Curley") ("Title= " . >>>>>> "ON BENNETTS SPINOZA: THE ISSUE OF TELEOLOGY") ("=3Dtype=3D" . "InBo= ok") >>>>>> ("=3Dkey=3D" . "curley-nil-on-bennet-spinoz")) nil nil) >>>>>> #f(compiled-function (key entry) #>>>>> -0x7fcb46b5c8e80b3>)("curley-nil-on-bennet-spinoz" (("Url" . >>>>>> "http://dx.doi.org/10.1163/9789004246638_005") ("Doi" . >>>>>> "10.1163/9789004246638_005") ("Date_added" . "Mon May 16 19:09:37 20= 16") >>>>>> ("Booktitle" . "Spinoza: Issues and Directions") ("Series" . "Spinoz= a: >>>>>> Issues and Directions") ("Year" . "nil") ("Publisher" . "Brill Acade= mic >>>>>> Publishers") ("Pages" . "39-52") ("Author" . "Edwin Curley") ("Title= " . >>>>>> "ON BENNETTS SPINOZA: THE ISSUE OF TELEOLOGY") ("=3Dtype=3D" . "InBo= ok") >>>>>> ("=3Dkey=3D" . "curley-nil-on-bennet-spinoz"))) >>>>>> maphash(#f(compiled-function (key entry) #>>>>> -0x7fcb46b5c8e80b3>) #) >>>>>> citeproc-hash-itemgetter-from-any(("~/Dropbox/Orgzly/reforg.bi= b")) >>>>>> org-ref-process-buffer(html) >>>>>> org-ref-csl-preprocess-buffer(html) >>>>>> run-hook-with-args(org-ref-csl-preprocess-buffer html) >>>>>> org-export-as(html nil nil nil (:output-file "~/test.html")) >>>>>> org-export-to-file(html "~/test.html" nil nil nil nil nil) >>>>>> org-html-export-to-html() >>>>>> (org-open-file (org-html-export-to-html)) >>>>>> (let ((org-export-before-parsing-hook >>>>>> '(org-ref-csl-preprocess-buffer))) (org-open-file >>>>>> (org-html-export-to-html))) >>>>>> eval-buffer(# nil >>>>>> "/home/joseph/.emacs.d/personal/preload/myorgexport..." nil t) ; >>>>>> Reading at buffer position 3196 >>>>>> >>>>>> load-with-code-conversion("/home/joseph/.emacs.d/personal/preload/my= orgexport..." >>>>>> "/home/joseph/.emacs.d/personal/preload/myorgexport..." nil nil) >>>>>> load("/home/joseph/.emacs.d/personal/preload/myorgexport...") >>>>>> mapc(load ("/home/joseph/.emacs.d/personal/preload/myorgexport= ...")) >>>>>> (progn (message "[Prelude] Loading personal configuration file= s in >>>>>> ..." prelude-personal-preload-dir) (mapc 'load (directory-files >>>>>> prelude-personal-preload-dir 't "^[^#.].*el$"))) >>>>>> (if (file-exists-p prelude-personal-preload-dir) (progn (messa= ge >>>>>> "[Prelude] Loading personal configuration files in ..." >>>>>> prelude-personal-preload-dir) (mapc 'load (directory-files >>>>>> prelude-personal-preload-dir 't "^[^#.].*el$")))) >>>>>> eval-buffer(# nil "/home/joseph/.emacs.d/init.= el" nil >>>>>> t) ; Reading at buffer position 4489 >>>>>> load-with-code-conversion("/home/joseph/.emacs.d/init.el" >>>>>> "/home/joseph/.emacs.d/init.el" t t) >>>>>> load("/home/joseph/.emacs.d/init" noerror nomessage) >>>>>> startup--load-user-init-file(#f(compiled-function () #>>>>> 0xec639179d6199fa>) #f(compiled-function () #>>>>> -0x1f3c686ddc0dc635>) t) >>>>>> command-line() >>>>>> normal-top-level() >>>>>> >>>>>> It's too complicated for me. >>>>>> org-ref version 2 with citeproc-org by Andras worked well, but now I= am >>>>>> afraid that to downgrade to org-ref 2 is not necessarily the best >>>>>> solution. I am lost. >>>>>> >>>>>> Best wishes, and thanks for your help. >>>>>> >>>>>> Jo. >>>>>> >>>>>> >>>>>> Le 30/11/2021 =C3=A0 18:31, John Kitchin a =C3=A9crit : >>>>>>> See https://www.youtube.com/watch?v=3DrRR-5NSpKyE >>>>>>> for an overview of = what to >>>>>>> do. basically you need a csl file that provides the style you want,= and >>>>>>> you specify it like this in the org file or in default settings. Yo= u may >>>>>>> also need a locale file if you are not blogging in english. >>>>>>> >>>>>>> #+csl-style: apa-5th-edition.csl >>>>>>> >>>>>>> #+csl-locale: en-US >>>>>>> >>>>>>> >>>>>>> You can find a basic example org file for html export with CSL at >>>>>>> https://github.com/jkitchin/org-ref/blob/master/examples/basic-csl.= org >>>>>>> >>>>>>> >>>>>>> Here is a minimal way to export your blog file I suppose. >>>>>>> >>>>>>> (let ((org-export-before-parsing-hook '(org-ref-csl-preprocess-buf= fer))) >>>>>>> (org-open-file (org-html-export-to-html))) >>>>>>> >>>>>>> >>>>>>> John >>>>>>> >>>>>>> ----------------------------------- >>>>>>> Professor John Kitchin (he/him/his) >>>>>>> Doherty Hall A207F >>>>>>> Department of Chemical Engineering >>>>>>> Carnegie Mellon University >>>>>>> Pittsburgh, PA 15213 >>>>>>> 412-268-7803 >>>>>>> @johnkitchin >>>>>>> http://kitchingroup.cheme.cmu.edu >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Tue, Nov 30, 2021 at 12:16 PM Andr=C3=A1s Simonyi >>>>>>> > wrote: >>>>>>> >>>>>>> Dear Joseph, >>>>>>> >>>>>>> unfortunately, my note on the `citeproc-org` page has become= kind of >>>>>>> misleading and has to be updated because org-ref didn't swit= ch to the >>>>>>> new org-cite citation syntax after all, although this was th= e plan for >>>>>>> a while. I think if you wish to use org-ref 3 then you shoul= d simply >>>>>>> remove citeproc-org entirely -- if I understand correctly th= e latest >>>>>>> version of org-ref supports the old syntax as well and is ca= pable of >>>>>>> CSL-based export (among others) on its own. >>>>>>> >>>>>>> best regards, >>>>>>> Andr=C3=A1s >>>>>>> >>>>>>> On Tue, 30 Nov 2021 at 18:00, Joseph Vidal-Rosset >>>>>>> > w= rote: >>>>>>> > >>>>>>> > >>>>>>> > Dear John, and dear Andras, >>>>>>> > >>>>>>> > Having updated my org-ref to the last version, I see that= the html >>>>>>> > export of bibliography does not work any longer for my bl= og. >>>>>>> > >>>>>>> > Reading Andras's note here >>>>>>> > https://github.com/andras-simonyi/citeproc-org >>>>>>> >>>>>>> > I confess that I am lost. >>>>>>> > >>>>>>> > What have I to do to not waste too much time with this pr= oblem? >>>>>>> > >>>>>>> > Best wishes, >>>>>>> > >>>>>>> > Jo. >>>>>>> > >>>>>>> >>>>>> >>> >>> >>> -- >>> Professor John Kitchin >>> Doherty Hall A207F >>> Department of Chemical Engineering >>> Carnegie Mellon University >>> Pittsburgh, PA 15213 >>> 412-268-7803 >>> @johnkitchin >>> http://kitchingroup.cheme.cmu.edu >>> Pronouns: he/him/his >>> > > [2. text/x-emacs-lisp; myblogexporter.el]... --=20 Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu Pronouns: he/him/his