* Bug: Error export to html - "Org-publish-cache-get: `org-publish-cache-get' called, but no cache present" [8.3beta (release_8.3beta-1115-g8f3946 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)]
@ 2015-05-04 11:47 Rainer M Krug
2015-05-06 7:39 ` Bug: Export to html fails when link to header in non existing file in document present WAS: " Rainer M Krug
0 siblings, 1 reply; 8+ messages in thread
From: Rainer M Krug @ 2015-05-04 11:47 UTC (permalink / raw)
To: emacs-orgmode
[-- Attachment #1: Type: text/plain, Size: 951874 bytes --]
Hi
I don't know how long I have this error (just back at the office after
two weeks away and haven't fone any html export for some time before),
but even when using
,----
| emacs -Q
`----
and loading the current org, I get the error when exporting to html -
but not to latex. When using the build in org (8.2.10), the export
works. The error is:
,----
| Org-publish-cache-get: `org-publish-cache-get' called, but no cache present
`----
The backtrace:
,----
| Debugger entered--Lisp error: (error "`org-publish-cache-get' called, but no cache present")
| signal(error ("`org-publish-cache-get' called, but no cache present"))
| error("`org-publish-cache-get' called, but no cache present")
| org-publish-cache-get("/Users/rainerkrug/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org")
| org-publish-cache-get-file-property("/Users/rainerkrug/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org" :references nil t)
| org-publish-resolve-external-link("*weavil" "~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org")
| org-html-link((link (:type "file" :path "~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org" :raw-link "file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil" :application nil :search-option "*weavil" :begin 170 :end 277 :contents-begin 268 :contents-end 274 :post-blank 1 :parent (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-20 Tue 11:38]" :begin 162 :end 685 :pre-blank 0 :contents-begin 300 :contents-end 685 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 162 :closed (timestamp (:type inactive :raw-value "[2014-02-18 Tue 16:29]" :year-start 2014 :month-start 2 :day-start 18 :hour-start 16 :minute-start 29 :year-end 2014 :month-end 2 :day-end 18 :hour-end 16 :minute-end 29 :begin 308 :end 330 :post-blank 0)) :HASH "6aa293d9193b1d8bf154c6e8aa5333f5" :TOODLEDOID "178564787" :title (#0 (timestamp (:type inactive :raw-value "[2010-07-20 Tue 11:38]" :year-start 2010 :month-start 7 :day-start 20 :hour-start 11 :minute-start 38 :year-end 2010 :month-end 7 :day-end 20 :hour-end 11 :minute-end 38 :begin 277 :end 299 :post-blank 0 :parent #2))) :parent (headline (:raw-value "Question" :begin 151 :end 2721 :pre-blank 0 :contents-begin 162 :contents-end 2720 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 151 :title (#("Question" 0 8 ...)) :parent (org-data nil (section ... ... ... ...) #4 (headline ...) (headline ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ... ... ... ...) (headline ... ...))) #2 (headline (:raw-value "[[id:0664530b-52d6-4f08-8f73-f125d1729844][releaseWeavil]] [2010-07-20 Tue 12:08]" :begin 685 :end 967 :pre-blank 0 :contents-begin 775 :contents-end 967 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 685 :closed (timestamp ...) :HASH "cb235c3d6660932629db470abc41ba4a" :TOODLEDOID "178564789" :title (... ...) :parent #4) (section (:begin 775 :end 967 :contents-begin 775 :contents-end 967 :post-blank 0 :post-affiliated 775 :parent #5) (paragraph ... #("How many weavils can be assumed to be released realistically at each site?\n" 0 75 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*ovipositionWeavil][ovipositionWeavil]] [2010-07-28 Wed 14:40]" :begin 967 :end 1341 :pre-blank 0 :contents-begin 1128 :contents-end 1341 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 967 :closed (timestamp ...) :HASH "0399e3159135859a7f71175bae961970" :TOODLEDOID "178564791" :title (... ...) :parent #4) (section (:begin 1128 :end 1341 :contents-begin 1128 :contents-end 1341 :post-blank 0 :post-affiliated 1128 :parent #5) (paragraph ... #("When do the weavils lay their eggs and how are they distributed among the number of egg laying?\n" 0 96 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:40]" :begin 1341 :end 1635 :pre-blank 0 :contents-begin 1480 :contents-end 1635 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1341 :closed (timestamp ...) :HASH "7e25ebd509a7fb628c5f2cff5996a9d0" :TOODLEDOID "178564793" :title (... ...) :parent #4) (section (:begin 1480 :end 1635 :contents-begin 1480 :contents-end 1635 :post-blank 0 :post-affiliated 1480 :parent #5) (paragraph ... #("What is the sex ration among weavils?\n" 0 38 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1635 :end 1948 :pre-blank 0 :contents-begin 1773 :contents-end 1948 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1635 :closed (timestamp ...) :HASH "dee388d401e6c16a08e0409c137b5f3e" :TOODLEDOID "178564795" :title (... ...) :parent #4) (section (:begin 1773 :end 1948 :contents-begin 1773 :contents-end 1948 :post-blank 0 :post-affiliated 1773 :parent #5) (paragraph ... #("How many eggs does a female weavil lay in it's live time?\n" 0 58 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5))))) (section (:begin 300 :end 685 :contents-begin 300 :contents-end 685 :post-blank 0 :post-affiliated 300 :parent #2) (paragraph (:begin 417 :end 460 :contents-begin 417 :contents-end 460 :post-blank 0 :post-affiliated 417 :parent #3) #("What are the parameter for weavil, namely:\n" 0 43 (:parent #4))) (plain-list (:type unordered :begin 460 :end 685 :contents-begin 460 :contents-end 685 :structure ((460 0 "- " nil nil nil 484) (484 0 "- " nil nil nil 502) (502 0 "- " nil nil nil 536) (536 0 "- " nil nil nil 607) (607 0 "- " nil nil nil 685)) :post-blank 0 :post-affiliated 460 :parent #3) (item (:bullet "- " :begin 460 :end 484 :contents-begin 462 :contents-end 484 :checkbox nil :counter nil :structure (... ... ... ... ...) :post-blank 0 :post-affiliated 460 :tag nil :parent #4) (paragraph (:begin 462 :end 484 :contents-begin 462 :contents-end 484 :post-blank 0 :post-affiliated 462 :parent #5) #("sex ration of weavils\n" 0 22 ...))) (item (:bullet "- " :begin 484 :end 502 :contents-begin 486 :contents-end 502 :checkbox nil :counter nil :structure (... ... ... ... ...) :post-blank 0 :post-affiliated 484 :tag nil :parent #4) (paragraph (:begin 486 :end 502 :contents-begin 486 :contents-end 502 :post-blank 0 :post-affiliated 486 :parent #5) #("eggs per female\n" 0 16 ...))) (item (:bullet "- " :begin 502 :end 536 :contents-begin 504 :contents-end 536 :checkbox nil :counter nil :structure (... ... ... ... ...) :post-blank 0 :post-affiliated 502 :tag nil :parent #4) (paragraph (:begin 504 :end 536 :contents-begin 504 :contents-end 536 :post-blank 0 :post-affiliated 504 :parent #5) #("eggs per pod by a single female\n" 0 32 ...))) (item (:bullet "- " :begin 536 :end 607 :contents-begin 538 :contents-end 607 :checkbox nil :counter nil :structure (... ... ... ... ...) :post-blank 0 :post-affiliated 536 :tag nil :parent #4) (paragraph (:begin 538 :end 607 :contents-begin 538 :contents-end 607 :post-blank 0 :post-affiliated 538 :parent #5) #("can weavils differentiate betwen ovipositioned pods and \"free\" pods?\n" 0 69 ...))) (item (:bullet "- " :begin 607 :end 685 :contents-begin 609 :contents-end 685 :checkbox nil :counter nil :structure (... ... ... ... ...) :post-blank 0 :post-affiliated 607 :tag nil :parent #4) (paragraph (:begin 609 :end 685 :contents-begin 609 :contents-end 685 :post-blank 0 :post-affiliated 609 :parent #5) #("What is the proportion of ovipositioned eggs and larvae emerging into soil?\n" 0 76 ...))))))) #("weavil" 0 6 (:parent #0))) #("weavil" 0 6 (:parent (link (:type "file" :path "~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org" :raw-link "file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil" :application nil :search-option "*weavil" :begin 170 :end 277 :contents-begin 268 :contents-end 274 :post-blank 1 :parent (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-20 Tue 11:38]" :begin 162 :end 685 :pre-blank 0 :contents-begin 300 :contents-end 685 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 162 :closed (timestamp (:type inactive :raw-value "[2014-02-18 Tue 16:29]" :year-start 2014 :month-start 2 :day-start 18 :hour-start 16 :minute-start 29 :year-end 2014 :month-end 2 :day-end 18 :hour-end 16 :minute-end 29 :begin 308 :end 330 :post-blank 0)) :HASH "6aa293d9193b1d8bf154c6e8aa5333f5" :TOODLEDOID "178564787" :title (#2 (timestamp ...)) :parent (headline (:raw-value "Question" :begin 151 :end 2721 :pre-blank 0 :contents-begin 162 :contents-end 2720 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 151 :title ... :parent ...) #4 (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...))) (section (:begin 300 :end 685 :contents-begin 300 :contents-end 685 :post-blank 0 :post-affiliated 300 :parent #4) (paragraph (:begin 417 :end 460 :contents-begin 417 :contents-end 460 :post-blank 0 :post-affiliated 417 :parent #5) #("What are the parameter for weavil, namely:\n" 0 43 ...)) (plain-list (:type unordered :begin 460 :end 685 :contents-begin 460 :contents-end 685 :structure ... :post-blank 0 :post-affiliated 460 :parent #5) (item ... ...) (item ... ...) (item ... ...) (item ... ...) (item ... ...))))) #("weavil" 0 6 (:parent #2))))) (:export-options nil :input-buffer "notes.org" :input-file "/Users/rainerkrug/org/notes.org" :html-doctype "xhtml-strict" :html-container "div" :description nil :keywords nil :html-html5-fancy nil :html-link-use-abs-url nil :html-link-home "" :html-link-up "" :html-mathjax "" :html-postamble auto :html-preamble t :html-head "" :html-head-extra "" :subtitle nil :html-head-include-default-style t :html-head-include-scripts t :html-allow-name-attribute-in-anchors nil :html-divs ((preamble "div" "preamble") (content "div" "content") (postamble "div" "postamble")) :html-checkbox-type ascii :html-extension "html" :html-footnote-format "<sup>%s</sup>" :html-footnote-separator "<sup>, </sup>" ...))
| org-export-data((link (:type "file" :path "~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org" :raw-link "file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil" :application nil :search-option "*weavil" :begin 170 :end 277 :contents-begin 268 :contents-end 274 :post-blank 1 :parent (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-20 Tue 11:38]" :begin 162 :end 685 :pre-blank 0 :contents-begin 300 :contents-end 685 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 162 :closed (timestamp (:type inactive :raw-value "[2014-02-18 Tue 16:29]" :year-start 2014 :month-start 2 :day-start 18 :hour-start 16 :minute-start 29 :year-end 2014 :month-end 2 :day-end 18 :hour-end 16 :minute-end 29 :begin 308 :end 330 :post-blank 0)) :HASH "6aa293d9193b1d8bf154c6e8aa5333f5" :TOODLEDOID "178564787" :title (#0 (timestamp (:type inactive :raw-value "[2010-07-20 Tue 11:38]" :year-start 2010 :month-start 7 :day-start 20 :hour-start 11 :minute-start 38 :year-end 2010 :month-end 7 :day-end 20 :hour-end 11 :minute-end 38 :begin 277 :end 299 :post-blank 0 :parent #2))) :parent (headline (:raw-value "Question" :begin 151 :end 2721 :pre-blank 0 :contents-begin 162 :contents-end 2720 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 151 :title (#("Question" 0 8 ...)) :parent (org-data nil (section ... ... ... ...) #4 (headline ...) (headline ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ... ... ... ...) (headline ... ...))) #2 (headline (:raw-value "[[id:0664530b-52d6-4f08-8f73-f125d1729844][releaseWeavil]] [2010-07-20 Tue 12:08]" :begin 685 :end 967 :pre-blank 0 :contents-begin 775 :contents-end 967 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 685 :closed (timestamp ...) :HASH "cb235c3d6660932629db470abc41ba4a" :TOODLEDOID "178564789" :title (... ...) :parent #4) (section (:begin 775 :end 967 :contents-begin 775 :contents-end 967 :post-blank 0 :post-affiliated 775 :parent #5) (paragraph ... #("How many weavils can be assumed to be released realistically at each site?\n" 0 75 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*ovipositionWeavil][ovipositionWeavil]] [2010-07-28 Wed 14:40]" :begin 967 :end 1341 :pre-blank 0 :contents-begin 1128 :contents-end 1341 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 967 :closed (timestamp ...) :HASH "0399e3159135859a7f71175bae961970" :TOODLEDOID "178564791" :title (... ...) :parent #4) (section (:begin 1128 :end 1341 :contents-begin 1128 :contents-end 1341 :post-blank 0 :post-affiliated 1128 :parent #5) (paragraph ... #("When do the weavils lay their eggs and how are they distributed among the number of egg laying?\n" 0 96 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:40]" :begin 1341 :end 1635 :pre-blank 0 :contents-begin 1480 :contents-end 1635 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1341 :closed (timestamp ...) :HASH "7e25ebd509a7fb628c5f2cff5996a9d0" :TOODLEDOID "178564793" :title (... ...) :parent #4) (section (:begin 1480 :end 1635 :contents-begin 1480 :contents-end 1635 :post-blank 0 :post-affiliated 1480 :parent #5) (paragraph ... #("What is the sex ration among weavils?\n" 0 38 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1635 :end 1948 :pre-blank 0 :contents-begin 1773 :contents-end 1948 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1635 :closed (timestamp ...) :HASH "dee388d401e6c16a08e0409c137b5f3e" :TOODLEDOID "178564795" :title (... ...) :parent #4) (section (:begin 1773 :end 1948 :contents-begin 1773 :contents-end 1948 :post-blank 0 :post-affiliated 1773 :parent #5) (paragraph ... #("How many eggs does a female weavil lay in it's live time?\n" 0 58 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5))))) (section (:begin 300 :end 685 :contents-begin 300 :contents-end 685 :post-blank 0 :post-affiliated 300 :parent #2) (paragraph (:begin 417 :end 460 :contents-begin 417 :contents-end 460 :post-blank 0 :post-affiliated 417 :parent #3) #("What are the parameter for weavil, namely:\n" 0 43 (:parent #4))) (plain-list (:type unordered :begin 460 :end 685 :contents-begin 460 :contents-end 685 :structure ((460 0 "- " nil nil nil 484) (484 0 "- " nil nil nil 502) (502 0 "- " nil nil nil 536) (536 0 "- " nil nil nil 607) (607 0 "- " nil nil nil 685)) :post-blank 0 :post-affiliated 460 :parent #3) (item (:bullet "- " :begin 460 :end 484 :contents-begin 462 :contents-end 484 :checkbox nil :counter nil :structure (... ... ... ... ...) :post-blank 0 :post-affiliated 460 :tag nil :parent #4) (paragraph (:begin 462 :end 484 :contents-begin 462 :contents-end 484 :post-blank 0 :post-affiliated 462 :parent #5) #("sex ration of weavils\n" 0 22 ...))) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1635 :end 1948 :pre-blank 0 :contents-begin 1773 :contents-end 1948 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1635 :closed (timestamp (:type inactive :raw-value "[2014-02-18 Tue 16:29]" :year-start 2014 :month-start 2 :day-start 18 :hour-start 16 :minute-start 29 :year-end 2014 :month-end 2 :day-end 18 :hour-end 16 :minute-end 29 :begin 1781 :end 1803 :post-blank 0)) :HASH "dee388d401e6c16a08e0409c137b5f3e" :TOODLEDOID "178564795" :title ((link ... #("weavil" 0 6 ...)) 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| org-export-data((headline (:raw-value "Question" :begin 151 :end 2721 :pre-blank 0 :contents-begin 162 :contents-end 2720 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 151 :title (#("Question" 0 8 (:parent #0))) :parent (org-data nil (section (:begin 1 :end 151 :contents-begin 1 :contents-end 150 :post-blank 1 :post-affiliated 1 :parent #2) (keyword (:key "LAST_MOBILE_CHANGE" :value "2014-05-09 10:45:43" :begin 1 :end 43 :post-blank 0 :post-affiliated 1 :parent #3)) (keyword (:key "TODO" :value "TODO(t) DELEGATED(g) SOMEDAY(s) WAITING(w) | DONE(d) CANCELED(c) REFERENCE(r)" :begin 43 :end 129 :post-blank 0 :post-affiliated 43 :parent #3)) (keyword (:key "STARTUP" :value "hidestars" :begin 129 :end 150 :post-blank 0 :post-affiliated 129 :parent #3))) #0 (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 (:parent #3))) :parent #2)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 (:parent #3))) :parent #2) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #3) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #4) (paragraph (:begin 2821 :end 3160 :contents-begin 2821 :contents-end 3160 :post-blank 0 :post-affiliated 2821 :parent #5) #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) 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(headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp (:type active :raw-value "<2014-02-25 Tue 10:18>" :year-start 2014 :month-start 2 :day-start 25 :hour-start 10 :minute-start 18 :year-end 2014 :month-end 2 :day-end 25 :hour-end 10 :minute-end 18 :begin 3272 :end 3294 :post-blank 0)) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #3) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #4) (paragraph (:begin 3295 :end 3598 :contents-begin 3295 :contents-end 3597 :post-blank 1 :post-affiliated 3295 :parent #5) #("DEADLINE: " 0 10 ...) (timestamp ...) #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph (:begin 3598 :end 3686 :contents-begin 3598 :contents-end 3685 :post-blank 1 :post-affiliated 3598 :parent #5) #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph (:begin 3686 :end 4026 :contents-begin 3686 :contents-end 4025 :post-blank 1 :post-affiliated 3686 :parent #5) #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph (:begin 4026 :end 4198 :contents-begin 4026 :contents-end 4197 :post-blank 1 :post-affiliated 4026 :parent #5) #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) (link ...) #("\n" 0 1 ...)) (paragraph (:begin 4198 :end 4269 :contents-begin 4198 :contents-end 4268 :post-blank 1 :post-affiliated 4198 :parent #5) #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph (:begin 4269 :end 4302 :contents-begin 4269 :contents-end 4301 :post-blank 1 :post-affiliated 4269 :parent #5) #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph (:begin 4302 :end 4324 :contents-begin 4302 :contents-end 4323 :post-blank 1 :post-affiliated 4302 :parent #5) #("Kind regards\nDorette\n" 0 21 ...)) (paragraph (:begin 4324 :end 4564 :contents-begin 4324 :contents-end 4560 :post-blank 4 :post-affiliated 4324 :parent #5) #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) (link ...) #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph (:begin 4564 :end 4885 :contents-begin 4564 :contents-end 4884 :post-blank 1 :post-affiliated 4564 :parent #5) #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) (link ...) #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) (subscript ... #("CIB.pdf" 0 7 ...)) #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) (subscript ... #("CIB.pdf" 0 7 ...)) #("]...\n" 0 5 ...)) 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(headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #3) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #4) (paragraph (:begin 7151 :end 7235 :contents-begin 7151 :contents-end 7234 :post-blank 1 :post-affiliated 7151 :parent #5) #("Variable transfer is " 0 21 ...) (bold ... #("very" 0 4 ...)) #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph (:begin 7235 :end 7303 :contents-begin 7235 :contents-end 7303 :post-blank 0 :post-affiliated 7235 :parent #5) #("SCHEDULED: " 0 11 ...) (timestamp ...) #("\nDEADLINE: " 0 12 ...) (timestamp ...) #("\n" 0 1 ...)) 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(headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #3) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #4) (paragraph (:begin 7688 :end 7720 :contents-begin 7688 :contents-end 7719 :post-blank 1 :post-affiliated 7688 :parent #5) #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph (:begin 7720 :end 7778 :contents-begin 7720 :contents-end 7778 :post-blank 0 :post-affiliated 7720 :parent #5) #("SCHEDULED: " 0 11 ...) (timestamp ...) #("\nDEADLINE: " 0 12 ...) (timestamp ...) #("\n" 0 1 ...)) 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(headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #3) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #4) (paragraph (:begin 8094 :end 8162 :contents-begin 8094 :contents-end 8162 :post-blank 0 :post-affiliated 8094 :parent #5) #("SCHEDULED: " 0 11 ...) (timestamp ...) #("\nDEADLINE: " 0 12 ...) (timestamp ...) #("\n" 0 1 ...)) (drawer (:begin 8162 :end 8231 :drawer-name "PROPERTIES" :contents-begin 8175 :contents-end 8223 :post-blank 1 :post-affiliated 8162 :parent #5) (paragraph ... #(":ID: 7A231A69-3E96-41F9-B74D-050B7C7B8D49\n" 0 48 ...))) 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If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph (:begin 4026 :end 4198 :contents-begin 4026 :contents-end 4197 :post-blank 1 :post-affiliated 4026 :parent #5) #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) (link ...) #("\n" 0 1 ...)) (paragraph (:begin 4198 :end 4269 :contents-begin 4198 :contents-end 4268 :post-blank 1 :post-affiliated 4198 :parent #5) #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph (:begin 4269 :end 4302 :contents-begin 4269 :contents-end 4301 :post-blank 1 :post-affiliated 4269 :parent #5) #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph (:begin 4302 :end 4324 :contents-begin 4302 :contents-end 4323 :post-blank 1 :post-affiliated 4302 :parent #5) #("Kind regards\nDorette\n" 0 21 ...)) 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(headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #3) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #4) (paragraph (:begin 7688 :end 7720 :contents-begin 7688 :contents-end 7719 :post-blank 1 :post-affiliated 7688 :parent #5) #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph (:begin 7720 :end 7778 :contents-begin 7720 :contents-end 7778 :post-blank 0 :post-affiliated 7720 :parent #5) #("SCHEDULED: " 0 11 ...) (timestamp ...) #("\nDEADLINE: " 0 12 ...) (timestamp ...) #("\n" 0 1 ...)) 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(headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #3) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #4) (paragraph (:begin 8094 :end 8162 :contents-begin 8094 :contents-end 8162 :post-blank 0 :post-affiliated 8094 :parent #5) #("SCHEDULED: " 0 11 ...) (timestamp ...) #("\nDEADLINE: " 0 12 ...) (timestamp ...) #("\n" 0 1 ...)) (drawer (:begin 8162 :end 8231 :drawer-name "PROPERTIES" :contents-begin 8175 :contents-end 8223 :post-blank 1 :post-affiliated 8162 :parent #5) (paragraph ... #(":ID: 7A231A69-3E96-41F9-B74D-050B7C7B8D49\n" 0 48 ...))) (paragraph (:begin 8231 :end 8264 :contents-begin 8231 :contents-end 8264 :post-blank 0 :post-affiliated 8231 :parent #5) #("a) confirm the analysis done by \n" 0 33 ...)) (plain-list (:type unordered :begin 8264 :end 8331 :contents-begin 8264 :contents-end 8331 :structure ... :post-blank 0 :post-affiliated 8264 :parent #5) (item ... ...) (item ... ...)) (paragraph (:begin 8331 :end 8444 :contents-begin 8331 :contents-end 8443 :post-blank 1 :post-affiliated 8331 :parent #5) #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 ...)) (paragraph (:begin 8444 :end 8587 :contents-begin 8444 :contents-end 8587 :post-blank 0 :post-affiliated 8444 :parent #5) (link ... #("Email from Rainer M. Krug: Re: Self thinning line and SDI" 0 57 ...)) #("\n" 0 1 ...)))) 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(paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "Getränke" :begin 14656 :end 14924 :pre-blank 0 :contents-begin 14669 :contents-end 14924 :level 3 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14656 :title ... :parent #5) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...) (headline ... ...))) (headline (:raw-value "Note ID: 0BA506C1-16FD-4B77-AD38-D7BBEABF1C65" :begin 14926 :end 14975 :pre-blank 0 :contents-begin nil :contents-end nil :level 2 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14926 :title (#("Note ID: 0BA506C1-16FD-4B77-AD38-D7BBEABF1C65" 0 45 ...)) :parent #4))) (headline (:raw-value "Talking book - Stevie wonder / Macy gray" :begin 14976 :end 15043 :pre-blank 0 :contents-begin 15019 :contents-end 15043 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14976 :title (#("Talking book - Stevie wonder / Macy gray" 0 40 ...)) :parent #3) (section (:begin 15019 :end 15043 :contents-begin 15019 :contents-end 15043 :post-blank 0 :post-affiliated 15019 :parent #4) (paragraph (:begin 15019 :end 15043 :contents-begin 15019 :contents-end 15043 :post-blank 0 :post-affiliated 15019 :parent #5) (timestamp ...) #("\n" 0 1 ...)))))) (keyword (:key "LAST_MOBILE_CHANGE" :value "2014-05-09 10:45:43" :begin 1 :end 43 :post-blank 0 :post-affiliated 1 :parent #1)) (keyword (:key "TODO" :value "TODO(t) DELEGATED(g) SOMEDAY(s) WAITING(w) | DONE(d) CANCELED(c) REFERENCE(r)" :begin 43 :end 129 :post-blank 0 :post-affiliated 43 :parent #1)) (keyword (:key "STARTUP" :value "hidestars" :begin 129 :end 150 :post-blank 0 :post-affiliated 129 :parent #1))) (headline (:raw-value "Question" :begin 151 :end 2721 :pre-blank 0 :contents-begin 162 :contents-end 2720 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 151 :title (#("Question" 0 8 (:parent #1))) :parent (org-data nil (section (:begin 1 :end 151 :contents-begin 1 :contents-end 150 :post-blank 1 :post-affiliated 1 :parent #3) (keyword (:key "LAST_MOBILE_CHANGE" :value "2014-05-09 10:45:43" :begin 1 :end 43 :post-blank 0 :post-affiliated 1 :parent #4)) (keyword (:key "TODO" :value "TODO(t) DELEGATED(g) SOMEDAY(s) WAITING(w) | DONE(d) CANCELED(c) REFERENCE(r)" :begin 43 :end 129 :post-blank 0 :post-affiliated 43 :parent #4)) (keyword (:key "STARTUP" :value "hidestars" :begin 129 :end 150 :post-blank 0 :post-affiliated 129 :parent #4))) #1 (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #4) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("a) confirm the analysis done by \n" 0 33 ...)) (plain-list ... ... ...) (paragraph ... #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Finalise ob-R.el" :begin 8587 :end 8974 :pre-blank 0 :contents-begin 8617 :contents-end 8974 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8587 :ID "5F6A6BCD-0A1B-41DF-A549-F5DB1519914A" :title (#("Finalise ob-R.el" 0 16 ...)) :parent #4) (section (:begin 8617 :end 8974 :contents-begin 8617 :contents-end 8974 :post-blank 0 :post-affiliated 8617 :parent #5) (paragraph ... #("See email from Eric\n" 0 20 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Make tangling with tables work in org by using environments" :begin 8974 :end 9364 :pre-blank 0 :contents-begin 9047 :contents-end 9364 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8974 :ID "41A164C7-9BC7-4583-88FC-DA539211D119" :title (#("Make tangling with tables work in org by using environments" 0 59 ...)) :parent #4) (section (:begin 9047 :end 9364 :contents-begin 9047 :contents-end 9364 :post-blank 0 :post-affiliated 9047 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("See \n" 0 5 ...) ... #("\nfor comments\n" 0 14 ...)))) (headline (:raw-value "Fix R packages" :begin 9364 :end 9930 :pre-blank 0 :contents-begin 9392 :contents-end 9930 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9364 :ID "AF036570-FCF6-437C-A627-93BE0CA9ABB3" :title (#("Fix R packages" 0 14 ...)) :parent #4) (section (:begin 9392 :end 9930 :contents-begin 9392 :contents-end 9930 :post-blank 0 :post-affiliated 9392 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("R message after install:\n" 0 25 ...)) (paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Document header arguments for R source code and their inheritance" :begin 10234 :end 10783 :pre-blank 0 :contents-begin 10313 :contents-end 10783 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10234 :ID "8CF7B383-65E7-4D58-9832-1301BDDFA67B" :title (#("Document header arguments for R source code and their inheritance" 0 65 ...)) :parent #4) (section (:begin 10313 :end 10783 :contents-begin 10313 :contents-end 10783 :post-blank 0 :post-affiliated 10313 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...)))) (headline (:raw-value "update homebrew littler" :begin 10783 :end 11114 :pre-blank 0 :contents-begin 10815 :contents-end 11114 :level 2 :priority nil :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10783 :ID "A67B8AB0-BFFA-46AE-8B81-92406B24C8AF" :title (#("update homebrew littler" 0 23 ...)) :parent #4) (section (:begin 10815 :end 11114 :contents-begin 10815 :contents-end 11114 :post-blank 0 :post-affiliated 10815 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Use use-package for emacs.org and gnus.org" :begin 11114 :end 11412 :pre-blank 0 :contents-begin 11170 :contents-end 11412 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11114 :ID "B92BCEE2-17D1-4E37-9524-840743A60ED0" :title (#("Use use-package for emacs.org and gnus.org" 0 42 ...)) :parent #4) (section (:begin 11170 :end 11412 :contents-begin 11170 :contents-end 11412 :post-blank 0 :post-affiliated 11170 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...))))) (headline (:raw-value "Re rip hotel Coates one --- cracking" :begin 11412 :end 11548 :pre-blank 0 :contents-begin 11457 :contents-end 11548 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11412 :ID "53D4A9DB-D662-4C06-A378-4F157ECCFADA" :title (#("Re rip hotel Coates one --- cracking" 0 36 ...)) :parent #3) (section (:begin 11457 :end 11548 :contents-begin 11457 :contents-end 11548 :post-blank 0 :post-affiliated 11457 :parent #4) (paragraph (:begin 11524 :end 11548 :contents-begin 11524 :contents-end 11548 :post-blank 0 :post-affiliated 11524 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) (headline (:raw-value "Contact Loewe." :begin 11548 :end 11595 :pre-blank 0 :contents-begin 11571 :contents-end 11595 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11548 :title (#("Contact Loewe." 0 14 ...)) :parent #3) (section (:begin 11571 :end 11595 :contents-begin 11571 :contents-end 11595 :post-blank 0 :post-affiliated 11571 :parent #4) (paragraph (:begin 11571 :end 11595 :contents-begin 11571 :contents-end 11595 :post-blank 0 :post-affiliated 11571 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) (headline (:raw-value "download Hessen Von oben. Und air DVD Bach Remsfeld." :begin 11595 :end 11680 :pre-blank 0 :contents-begin 11656 :contents-end 11680 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11595 :title (#("download Hessen Von oben. 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) 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(drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "Finalise ob-R.el" :begin 8587 :end 8974 :pre-blank 0 :contents-begin 8617 :contents-end 8974 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8587 :ID "5F6A6BCD-0A1B-41DF-A549-F5DB1519914A" :title (#("Finalise ob-R.el" 0 16 ...)) :parent #4) (section (:begin 8617 :end 8974 :contents-begin 8617 :contents-end 8974 :post-blank 0 :post-affiliated 8617 :parent #5) (paragraph ... #("See email from Eric\n" 0 20 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 (:parent #2))) :parent #1) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #2) (paragraph (:begin 2821 :end 3160 :contents-begin 2821 :contents-end 3160 :post-blank 0 :post-affiliated 2821 :parent #3) #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 (:parent #4)) (link (:type "notmuch" :path "id:52E02F8A.7040602@krugs.de" :raw-link "notmuch:id:52E02F8A.7040602@krugs.de" :application nil :search-option nil :begin 2992 :end 3091 :contents-begin 3032 :contents-end 3089 :post-blank 0 :parent #4) #("Email from Rainer M. Krug: Creating Namespace and locking" 0 57 (:parent #5))) #("\nSCHEDULED: " 0 12 (:parent #4)) (timestamp (:type active :raw-value "<2014-02-21 Fri 10:36>" :year-start 2014 :month-start 2 :day-start 21 :hour-start 10 :minute-start 36 :year-end 2014 :month-end 2 :day-end 21 :hour-end 10 :minute-end 36 :begin 3103 :end 3125 :post-blank 0 :parent #4)) #("\nDEADLINE: " 0 12 (:parent #4)) (timestamp (:type active :raw-value "<2014-02-21 Fri 10:36>" :year-start 2014 :month-start 2 :day-start 21 :hour-start 10 :minute-start 36 :year-end 2014 :month-end 2 :day-end 21 :hour-end 10 :minute-end 36 :begin 3137 :end 3159 :post-blank 0 :parent #4)) #("\n" 0 1 (:parent #4))) (drawer (:begin 3160 :end 3227 :drawer-name "PROPERTIES" :contents-begin 3173 :contents-end 3221 :post-blank 0 :post-affiliated 3160 :parent #3) (paragraph (:begin 3173 :end 3221 :contents-begin 3173 :contents-end 3221 :post-blank 0 :post-affiliated 3173 :parent #4) #(":ID: 94655E5B-4B05-471B-8F8A-46C534830EC0\n" 0 48 (:parent #5)))))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp (:type active :raw-value "<2014-02-25 Tue 10:18>" :year-start 2014 :month-start 2 :day-start 25 :hour-start 10 :minute-start 18 :year-end 2014 :month-end 2 :day-end 25 :hour-end 10 :minute-end 18 :begin 3272 :end 3294 :post-blank 0)) :title (#("Write Nugget for CIB" 0 20 (:parent #2))) :parent #1) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #2) (paragraph (:begin 3295 :end 3598 :contents-begin 3295 :contents-end 3597 :post-blank 1 :post-affiliated 3295 :parent #3) #("DEADLINE: " 0 10 (:parent #4)) (timestamp (:type active :raw-value "<2014-02-28 Fri 10:18>" :year-start 2014 :month-start 2 :day-start 28 :hour-start 10 :minute-start 18 :year-end 2014 :month-end 2 :day-end 28 :hour-end 10 :minute-end 18 :begin 3305 :end 3327 :post-blank 0 :parent #4)) #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 (:parent #4))) (paragraph (:begin 3598 :end 3686 :contents-begin 3598 :contents-end 3685 :post-blank 1 :post-affiliated 3598 :parent #3) #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 (:parent #4))) (paragraph (:begin 3686 :end 4026 :contents-begin 3686 :contents-end 4025 :post-blank 1 :post-affiliated 3686 :parent #3) #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 (:parent #4))) (paragraph (:begin 4026 :end 4198 :contents-begin 4026 :contents-end 4197 :post-blank 1 :post-affiliated 4026 :parent #3) #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 (:parent #4)) (link (:type "http" :path "//academic.sun.ac.za/cib/news.asp" :raw-link "http://academic.sun.ac.za/cib/news.asp" :application nil :search-option nil :begin 4158 :end 4196 :contents-begin nil :contents-end nil :post-blank 0 :parent #4)) #("\n" 0 1 (:parent #4))) (paragraph (:begin 4198 :end 4269 :contents-begin 4198 :contents-end 4268 :post-blank 1 :post-affiliated 4198 :parent #3) #("If you can send me some text with a picture or two, it will be great.\n" 0 70 (:parent #4))) (paragraph (:begin 4269 :end 4302 :contents-begin 4269 :contents-end 4301 :post-blank 1 :post-affiliated 4269 :parent #3) #("Many thanks. Have a great week.\n" 0 32 (:parent #4))) (paragraph (:begin 4302 :end 4324 :contents-begin 4302 :contents-end 4323 :post-blank 1 :post-affiliated 4302 :parent #3) #("Kind regards\nDorette\n" 0 21 (:parent #4))) (paragraph (:begin 4324 :end 4564 :contents-begin 4324 :contents-end 4560 :post-blank 4 :post-affiliated 4324 :parent #3) #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 (:parent #4)) (link (:type "http" :path "//www.sun.ac.za/cib/" :raw-link "http://www.sun.ac.za/cib/" :application nil :search-option nil :begin 4480 :end 4505 :contents-begin nil :contents-end nil :post-blank 0 :parent #4)) #("\nReducing the rate and impacts of biological invasions\n" 0 55 (:parent #4))) (paragraph (:begin 4564 :end 4885 :contents-begin 4564 :contents-end 4884 :post-blank 1 :post-affiliated 4564 :parent #3) #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 (:parent #4)) (link (:type "http" :path "//www.sun.ac.za/emaildisclaimer" :raw-link "http://www.sun.ac.za/emaildisclaimer" :application nil :search-option nil :begin 4714 :end 4750 :contents-begin nil :contents-end nil :post-blank 0 :parent #4)) #("\n[2. 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(paragraph (:begin 8331 :end 8444 :contents-begin 8331 :contents-end 8443 :post-blank 1 :post-affiliated 8331 :parent #3) #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 (:parent #4))) (paragraph (:begin 8444 :end 8587 :contents-begin 8444 :contents-end 8587 :post-blank 0 :post-affiliated 8444 :parent #3) (link (:type "gnus" :path "nnimap+Maildir:RMKrugGMAIL.%5BGmail%5D.Sent%20Mail#m24mzr27t9.fsf@krugs.de" :raw-link "gnus:nnimap+Maildir:RMKrugGMAIL.%5BGmail%5D.Sent%20Mail#m24mzr27t9.fsf@krugs.de" :application nil :search-option nil :begin 8444 :end 8586 :contents-begin 8527 :contents-end 8584 :post-blank 0 :parent #4) #("Email from Rainer M. 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #4) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("a) confirm the analysis done by \n" 0 33 ...)) (plain-list ... ... ...) (paragraph ... #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Finalise ob-R.el" :begin 8587 :end 8974 :pre-blank 0 :contents-begin 8617 :contents-end 8974 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8587 :ID "5F6A6BCD-0A1B-41DF-A549-F5DB1519914A" :title (#("Finalise ob-R.el" 0 16 ...)) :parent #4) (section (:begin 8617 :end 8974 :contents-begin 8617 :contents-end 8974 :post-blank 0 :post-affiliated 8617 :parent #5) (paragraph ... #("See email from Eric\n" 0 20 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Make tangling with tables work in org by using environments" :begin 8974 :end 9364 :pre-blank 0 :contents-begin 9047 :contents-end 9364 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8974 :ID "41A164C7-9BC7-4583-88FC-DA539211D119" :title (#("Make tangling with tables work in org by using environments" 0 59 ...)) :parent #4) (section (:begin 9047 :end 9364 :contents-begin 9047 :contents-end 9364 :post-blank 0 :post-affiliated 9047 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("See \n" 0 5 ...) ... #("\nfor comments\n" 0 14 ...)))) (headline (:raw-value "Fix R packages" :begin 9364 :end 9930 :pre-blank 0 :contents-begin 9392 :contents-end 9930 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9364 :ID "AF036570-FCF6-437C-A627-93BE0CA9ABB3" :title (#("Fix R packages" 0 14 ...)) :parent #4) (section (:begin 9392 :end 9930 :contents-begin 9392 :contents-end 9930 :post-blank 0 :post-affiliated 9392 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("R message after install:\n" 0 25 ...)) (paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Document header arguments for R source code and their inheritance" :begin 10234 :end 10783 :pre-blank 0 :contents-begin 10313 :contents-end 10783 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10234 :ID "8CF7B383-65E7-4D58-9832-1301BDDFA67B" :title (#("Document header arguments for R source code and their inheritance" 0 65 ...)) :parent #4) (section (:begin 10313 :end 10783 :contents-begin 10313 :contents-end 10783 :post-blank 0 :post-affiliated 10313 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...)))) (headline (:raw-value "update homebrew littler" :begin 10783 :end 11114 :pre-blank 0 :contents-begin 10815 :contents-end 11114 :level 2 :priority nil :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10783 :ID "A67B8AB0-BFFA-46AE-8B81-92406B24C8AF" :title (#("update homebrew littler" 0 23 ...)) :parent #4) (section (:begin 10815 :end 11114 :contents-begin 10815 :contents-end 11114 :post-blank 0 :post-affiliated 10815 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Use use-package for emacs.org and gnus.org" :begin 11114 :end 11412 :pre-blank 0 :contents-begin 11170 :contents-end 11412 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11114 :ID "B92BCEE2-17D1-4E37-9524-840743A60ED0" :title (#("Use use-package for emacs.org and gnus.org" 0 42 ...)) :parent #4) (section (:begin 11170 :end 11412 :contents-begin 11170 :contents-end 11412 :post-blank 0 :post-affiliated 11170 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) 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Und air DVD Bach Remsfeld." :begin 11595 :end 11680 :pre-blank 0 :contents-begin 11656 :contents-end 11680 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11595 :title (#("download Hessen Von oben. Und air DVD Bach Remsfeld." 0 52 ...)) :parent #3) (section (:begin 11656 :end 11680 :contents-begin 11656 :contents-end 11680 :post-blank 0 :post-affiliated 11656 :parent #4) (paragraph (:begin 11656 :end 11680 :contents-begin 11656 :contents-end 11680 :post-blank 0 :post-affiliated 11656 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) (headline (:raw-value "Drombusch's runterladen" :begin 11680 :end 11860 :pre-blank 0 :contents-begin 11712 :contents-end 11860 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11680 :title (#("Drombusch's runterladen" 0 23 ...)) :parent #3) (section (:begin 11712 :end 11860 :contents-begin 11712 :contents-end 11860 :post-blank 0 :post-affiliated 11712 :parent #4) (paragraph (:begin 11712 :end 11738 :contents-begin 11712 :contents-end 11736 :post-blank 2 :post-affiliated 11712 :parent #5) (timestamp ...) #("\n" 0 1 ...)) (paragraph (:begin 11738 :end 11860 :contents-begin 11738 :contents-end 11860 :post-blank 0 :post-affiliated 11738 :parent #5) (link ... #("Email from Roger Bivand: Re: Geostat parallel round tab" 0 55 ...)) #("\n" 0 1 ...)))) (headline (:raw-value "Reitsachen Katharina" :begin 11860 :end 11998 :pre-blank 0 :contents-begin 11888 :contents-end 11998 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11860 :title (#("Reitsachen Katharina" 0 20 ...)) :parent #3) (section (:begin 11888 :end 11998 :contents-begin 11888 :contents-end 11998 :post-blank 0 :post-affiliated 11888 :parent #4) (paragraph (:begin 11888 :end 11912 :contents-begin 11888 :contents-end 11912 :post-blank 0 :post-affiliated 11888 :parent #5) (timestamp ...) #("\n" 0 1 ...)) (plain-list (:type unordered :begin 11912 :end 11998 :contents-begin 11912 :contents-end 11998 :structure ... :post-blank 0 :post-affiliated 11912 :parent #5) (item ... ...) (item ... ...) (item ... ...) (item ... ...) (item ... ...) (item ... ...)))) (headline (:raw-value "Silent witness - BBC series" :begin 11998 :end 12052 :pre-blank 0 :contents-begin 12028 :contents-end 12052 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11998 :title (#("Silent witness - BBC series" 0 27 ...)) :parent #3) (section (:begin 12028 :end 12052 :contents-begin 12028 :contents-end 12052 :post-blank 0 :post-affiliated 12028 :parent #4) (paragraph (:begin 12028 :end 12052 :contents-begin 12028 :contents-end 12052 :post-blank 0 :post-affiliated 12028 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1635 :end 1948 :pre-blank 0 :contents-begin 1773 :contents-end 1948 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1635 :closed (timestamp ...) :HASH "dee388d401e6c16a08e0409c137b5f3e" :TOODLEDOID "178564795" :title (... ...) :parent #4) (section (:begin 1773 :end 1948 :contents-begin 1773 :contents-end 1948 :post-blank 0 :post-affiliated 1773 :parent #5) (paragraph ... #("How many eggs does a female weavil lay in it's live time?\n" 0 58 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #4) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("a) confirm the analysis done by \n" 0 33 ...)) (plain-list ... ... ...) (paragraph ... #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Finalise ob-R.el" :begin 8587 :end 8974 :pre-blank 0 :contents-begin 8617 :contents-end 8974 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8587 :ID "5F6A6BCD-0A1B-41DF-A549-F5DB1519914A" :title (#("Finalise ob-R.el" 0 16 ...)) :parent #4) (section (:begin 8617 :end 8974 :contents-begin 8617 :contents-end 8974 :post-blank 0 :post-affiliated 8617 :parent #5) (paragraph ... #("See email from Eric\n" 0 20 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Make tangling with tables work in org by using environments" :begin 8974 :end 9364 :pre-blank 0 :contents-begin 9047 :contents-end 9364 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8974 :ID "41A164C7-9BC7-4583-88FC-DA539211D119" :title (#("Make tangling with tables work in org by using environments" 0 59 ...)) :parent #4) (section (:begin 9047 :end 9364 :contents-begin 9047 :contents-end 9364 :post-blank 0 :post-affiliated 9047 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("See \n" 0 5 ...) ... #("\nfor comments\n" 0 14 ...)))) (headline (:raw-value "Fix R packages" :begin 9364 :end 9930 :pre-blank 0 :contents-begin 9392 :contents-end 9930 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9364 :ID "AF036570-FCF6-437C-A627-93BE0CA9ABB3" :title (#("Fix R packages" 0 14 ...)) :parent #4) (section (:begin 9392 :end 9930 :contents-begin 9392 :contents-end 9930 :post-blank 0 :post-affiliated 9392 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("R message after install:\n" 0 25 ...)) (paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Document header arguments for R source code and their inheritance" :begin 10234 :end 10783 :pre-blank 0 :contents-begin 10313 :contents-end 10783 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10234 :ID "8CF7B383-65E7-4D58-9832-1301BDDFA67B" :title (#("Document header arguments for R source code and their inheritance" 0 65 ...)) :parent #4) (section (:begin 10313 :end 10783 :contents-begin 10313 :contents-end 10783 :post-blank 0 :post-affiliated 10313 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...)))) (headline (:raw-value "update homebrew littler" :begin 10783 :end 11114 :pre-blank 0 :contents-begin 10815 :contents-end 11114 :level 2 :priority nil :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10783 :ID "A67B8AB0-BFFA-46AE-8B81-92406B24C8AF" :title (#("update homebrew littler" 0 23 ...)) :parent #4) (section (:begin 10815 :end 11114 :contents-begin 10815 :contents-end 11114 :post-blank 0 :post-affiliated 10815 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Use use-package for emacs.org and gnus.org" :begin 11114 :end 11412 :pre-blank 0 :contents-begin 11170 :contents-end 11412 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11114 :ID "B92BCEE2-17D1-4E37-9524-840743A60ED0" :title (#("Use use-package for emacs.org and gnus.org" 0 42 ...)) :parent #4) (section (:begin 11170 :end 11412 :contents-begin 11170 :contents-end 11412 :post-blank 0 :post-affiliated 11170 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...))))) (headline (:raw-value "Re rip hotel Coates one --- cracking" :begin 11412 :end 11548 :pre-blank 0 :contents-begin 11457 :contents-end 11548 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11412 :ID "53D4A9DB-D662-4C06-A378-4F157ECCFADA" :title (#("Re rip hotel Coates one --- cracking" 0 36 ...)) :parent #3) (section (:begin 11457 :end 11548 :contents-begin 11457 :contents-end 11548 :post-blank 0 :post-affiliated 11457 :parent #4) (paragraph (:begin 11524 :end 11548 :contents-begin 11524 :contents-end 11548 :post-blank 0 :post-affiliated 11524 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) (headline (:raw-value "Contact Loewe." :begin 11548 :end 11595 :pre-blank 0 :contents-begin 11571 :contents-end 11595 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11548 :title (#("Contact Loewe." 0 14 ...)) :parent #3) (section (:begin 11571 :end 11595 :contents-begin 11571 :contents-end 11595 :post-blank 0 :post-affiliated 11571 :parent #4) (paragraph (:begin 11571 :end 11595 :contents-begin 11571 :contents-end 11595 :post-blank 0 :post-affiliated 11571 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) #1 (headline (:raw-value "Drombusch's runterladen" :begin 11680 :end 11860 :pre-blank 0 :contents-begin 11712 :contents-end 11860 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11680 :title (#("Drombusch's runterladen" 0 23 ...)) :parent #3) (section (:begin 11712 :end 11860 :contents-begin 11712 :contents-end 11860 :post-blank 0 :post-affiliated 11712 :parent #4) (paragraph (:begin 11712 :end 11738 :contents-begin 11712 :contents-end 11736 :post-blank 2 :post-affiliated 11712 :parent #5) (timestamp ...) #("\n" 0 1 ...)) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*ovipositionWeavil][ovipositionWeavil]] [2010-07-28 Wed 14:40]" :begin 967 :end 1341 :pre-blank 0 :contents-begin 1128 :contents-end 1341 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 967 :closed (timestamp ...) :HASH "0399e3159135859a7f71175bae961970" :TOODLEDOID "178564791" :title (... ...) :parent #4) (section (:begin 1128 :end 1341 :contents-begin 1128 :contents-end 1341 :post-blank 0 :post-affiliated 1128 :parent #5) (paragraph ... #("When do the weavils lay their eggs and how are they distributed among the number of egg laying?\n" 0 96 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:40]" :begin 1341 :end 1635 :pre-blank 0 :contents-begin 1480 :contents-end 1635 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1341 :closed (timestamp ...) :HASH "7e25ebd509a7fb628c5f2cff5996a9d0" :TOODLEDOID "178564793" :title (... ...) :parent #4) (section (:begin 1480 :end 1635 :contents-begin 1480 :contents-end 1635 :post-blank 0 :post-affiliated 1480 :parent #5) (paragraph ... #("What is the sex ration among weavils?\n" 0 38 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1635 :end 1948 :pre-blank 0 :contents-begin 1773 :contents-end 1948 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1635 :closed (timestamp ...) :HASH "dee388d401e6c16a08e0409c137b5f3e" :TOODLEDOID "178564795" :title (... ...) :parent #4) (section (:begin 1773 :end 1948 :contents-begin 1773 :contents-end 1948 :post-blank 0 :post-affiliated 1773 :parent #5) (paragraph ... #("How many eggs does a female weavil lay in it's live time?\n" 0 58 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #4) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("a) confirm the analysis done by \n" 0 33 ...)) (plain-list ... ... ...) (paragraph ... #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Finalise ob-R.el" :begin 8587 :end 8974 :pre-blank 0 :contents-begin 8617 :contents-end 8974 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8587 :ID "5F6A6BCD-0A1B-41DF-A549-F5DB1519914A" :title (#("Finalise ob-R.el" 0 16 ...)) :parent #4) (section (:begin 8617 :end 8974 :contents-begin 8617 :contents-end 8974 :post-blank 0 :post-affiliated 8617 :parent #5) (paragraph ... #("See email from Eric\n" 0 20 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Make tangling with tables work in org by using environments" :begin 8974 :end 9364 :pre-blank 0 :contents-begin 9047 :contents-end 9364 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8974 :ID "41A164C7-9BC7-4583-88FC-DA539211D119" :title (#("Make tangling with tables work in org by using environments" 0 59 ...)) :parent #4) (section (:begin 9047 :end 9364 :contents-begin 9047 :contents-end 9364 :post-blank 0 :post-affiliated 9047 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("See \n" 0 5 ...) ... #("\nfor comments\n" 0 14 ...)))) (headline (:raw-value "Fix R packages" :begin 9364 :end 9930 :pre-blank 0 :contents-begin 9392 :contents-end 9930 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9364 :ID "AF036570-FCF6-437C-A627-93BE0CA9ABB3" :title (#("Fix R packages" 0 14 ...)) :parent #4) (section (:begin 9392 :end 9930 :contents-begin 9392 :contents-end 9930 :post-blank 0 :post-affiliated 9392 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("R message after install:\n" 0 25 ...)) (paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Document header arguments for R source code and their inheritance" :begin 10234 :end 10783 :pre-blank 0 :contents-begin 10313 :contents-end 10783 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10234 :ID "8CF7B383-65E7-4D58-9832-1301BDDFA67B" :title (#("Document header arguments for R source code and their inheritance" 0 65 ...)) :parent #4) (section (:begin 10313 :end 10783 :contents-begin 10313 :contents-end 10783 :post-blank 0 :post-affiliated 10313 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...)))) (headline (:raw-value "update homebrew littler" :begin 10783 :end 11114 :pre-blank 0 :contents-begin 10815 :contents-end 11114 :level 2 :priority nil :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10783 :ID "A67B8AB0-BFFA-46AE-8B81-92406B24C8AF" :title (#("update homebrew littler" 0 23 ...)) :parent #4) (section (:begin 10815 :end 11114 :contents-begin 10815 :contents-end 11114 :post-blank 0 :post-affiliated 10815 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Use use-package for emacs.org and gnus.org" :begin 11114 :end 11412 :pre-blank 0 :contents-begin 11170 :contents-end 11412 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11114 :ID "B92BCEE2-17D1-4E37-9524-840743A60ED0" :title (#("Use use-package for emacs.org and gnus.org" 0 42 ...)) :parent #4) (section (:begin 11170 :end 11412 :contents-begin 11170 :contents-end 11412 :post-blank 0 :post-affiliated 11170 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...))))) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 ...)) :parent #4) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("a) confirm the analysis done by \n" 0 33 ...)) (plain-list ... ... ...) (paragraph ... #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Finalise ob-R.el" :begin 8587 :end 8974 :pre-blank 0 :contents-begin 8617 :contents-end 8974 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8587 :ID "5F6A6BCD-0A1B-41DF-A549-F5DB1519914A" :title (#("Finalise ob-R.el" 0 16 ...)) :parent #4) (section (:begin 8617 :end 8974 :contents-begin 8617 :contents-end 8974 :post-blank 0 :post-affiliated 8617 :parent #5) (paragraph ... #("See email from Eric\n" 0 20 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Make tangling with tables work in org by using environments" :begin 8974 :end 9364 :pre-blank 0 :contents-begin 9047 :contents-end 9364 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 8974 :ID "41A164C7-9BC7-4583-88FC-DA539211D119" :title (#("Make tangling with tables work in org by using environments" 0 59 ...)) :parent #4) (section (:begin 9047 :end 9364 :contents-begin 9047 :contents-end 9364 :post-blank 0 :post-affiliated 9047 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("See \n" 0 5 ...) ... #("\nfor comments\n" 0 14 ...)))) (headline (:raw-value "Fix R packages" :begin 9364 :end 9930 :pre-blank 0 :contents-begin 9392 :contents-end 9930 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9364 :ID "AF036570-FCF6-437C-A627-93BE0CA9ABB3" :title (#("Fix R packages" 0 14 ...)) :parent #4) (section (:begin 9392 :end 9930 :contents-begin 9392 :contents-end 9930 :post-blank 0 :post-affiliated 9392 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("R message after install:\n" 0 25 ...)) (paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Document header arguments for R source code and their inheritance" :begin 10234 :end 10783 :pre-blank 0 :contents-begin 10313 :contents-end 10783 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10234 :ID "8CF7B383-65E7-4D58-9832-1301BDDFA67B" :title (#("Document header arguments for R source code and their inheritance" 0 65 ...)) :parent #4) (section (:begin 10313 :end 10783 :contents-begin 10313 :contents-end 10783 :post-blank 0 :post-affiliated 10313 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...)))) (headline (:raw-value "update homebrew littler" :begin 10783 :end 11114 :pre-blank 0 :contents-begin 10815 :contents-end 11114 :level 2 :priority nil :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 10783 :ID "A67B8AB0-BFFA-46AE-8B81-92406B24C8AF" :title (#("update homebrew littler" 0 23 ...)) :parent #4) (section (:begin 10815 :end 11114 :contents-begin 10815 :contents-end 11114 :post-blank 0 :post-affiliated 10815 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Use use-package for emacs.org and gnus.org" :begin 11114 :end 11412 :pre-blank 0 :contents-begin 11170 :contents-end 11412 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11114 :ID "B92BCEE2-17D1-4E37-9524-840743A60ED0" :title (#("Use use-package for emacs.org and gnus.org" 0 42 ...)) :parent #4) (section (:begin 11170 :end 11412 :contents-begin 11170 :contents-end 11412 :post-blank 0 :post-affiliated 11170 :parent #5) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ...) (paragraph ... ... #("\n" 0 1 ...) ... #("\n" 0 1 ...))))) (headline (:raw-value "Re rip hotel Coates one --- cracking" :begin 11412 :end 11548 :pre-blank 0 :contents-begin 11457 :contents-end 11548 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11412 :ID "53D4A9DB-D662-4C06-A378-4F157ECCFADA" :title (#("Re rip hotel Coates one --- cracking" 0 36 ...)) :parent #3) (section (:begin 11457 :end 11548 :contents-begin 11457 :contents-end 11548 :post-blank 0 :post-affiliated 11457 :parent #4) (paragraph (:begin 11524 :end 11548 :contents-begin 11524 :contents-end 11548 :post-blank 0 :post-affiliated 11524 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) (headline (:raw-value "Contact Loewe." :begin 11548 :end 11595 :pre-blank 0 :contents-begin 11571 :contents-end 11595 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11548 :title (#("Contact Loewe." 0 14 ...)) :parent #3) (section (:begin 11571 :end 11595 :contents-begin 11571 :contents-end 11595 :post-blank 0 :post-affiliated 11571 :parent #4) (paragraph (:begin 11571 :end 11595 :contents-begin 11571 :contents-end 11595 :post-blank 0 :post-affiliated 11571 :parent #5) (timestamp ...) #("\n" 0 1 ...)))) (headline (:raw-value "download Hessen Von oben. Und air DVD Bach Remsfeld." :begin 11595 :end 11680 :pre-blank 0 :contents-begin 11656 :contents-end 11680 :level 1 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 11595 :title (#("download Hessen Von oben. 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Write upload-to-dropbox-and-insert-link for emacs" :begin 5116 :end 5684 :pre-blank 0 :contents-begin 5179 :contents-end 5684 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5116 :scheduled (timestamp ...) :ID "7119BCD5-C351-47D5-82F8-7219535C0D25" :title (#("Write upload-to-dropbox-and-insert-link for emacs" 0 49 ...)) :parent #4) (section (:begin 5179 :end 5684 :contents-begin 5179 :contents-end 5684 :post-blank 0 :post-affiliated 5179 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... #("Using the scrip " 0 16 ...) ... #("it\nshould be relatively straight forward to write a small script which is\ndoing the same as thunderbird:\n" 0 105 ...)) (plain-list ... ... ...) (paragraph ... #("The document can be whatever, e.g. an email in gnus.\n" 0 53 ...)))) (headline (:raw-value "Add R commands as elisp variables to be executed after variable extension" :begin 5684 :end 5972 :pre-blank 1 :contents-begin 5776 :contents-end 5972 :level 2 :priority 68 :tags nil :todo-keyword "CANCELED" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5684 :title (#("Add R commands as elisp variables to be executed after variable extension" 0 73 ...)) :parent #4) (section (:begin 5776 :end 5972 :contents-begin 5776 :contents-end 5972 :post-blank 0 :post-affiliated 5776 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Review Article" :begin 5972 :end 6492 :pre-blank 1 :contents-begin 6001 :contents-end 6492 :level 2 :priority 66 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 5972 :title (#("Review Article" 0 14 ...)) :parent #4) (section (:begin 6001 :end 6492 :contents-begin 6001 :contents-end 6492 :post-blank 0 :post-affiliated 6001 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)) (paragraph ... #("The Manuscript is at:\n" 0 22 ...)) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Add :localize: header argument to R code blocks" :begin 6492 :end 7109 :pre-blank 0 :contents-begin 6553 :contents-end 7109 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 6492 :ID "4CBB79F0-2188-4B88-8484-BFB940F258F5" :title (#("Add :localize: header argument to R code blocks" 0 47 ...)) :parent #4) (section (:begin 6553 :end 7109 :contents-begin 6553 :contents-end 7109 :post-blank 0 :post-affiliated 6553 :parent #5) (paragraph ... #("Localize will make it ossible to \"clean up\" after code completion,\ni.e. that all variables changed " 0 99 ...) ... #("will not\npersist into the next code block.\nIf this header argument is set to " 0 77 ...) ... #(", they will persist.\n" 0 21 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "Problem with tangling!!!!!!!" :begin 7109 :end 7591 :pre-blank 0 :contents-begin 7151 :contents-end 7591 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7109 :title (#("Problem with tangling!!!!!!!" 0 28 ...)) :parent #4) (section (:begin 7151 :end 7591 :contents-begin 7151 :contents-end 7591 :post-blank 0 :post-affiliated 7151 :parent #5) (paragraph ... #("Variable transfer is " 0 21 ...) ... #("problematic now - I really have to think about it!!!!!\n" 0 55 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) (headline (:raw-value "PROTEA Call 2015" :begin 7591 :end 7985 :pre-blank 0 :contents-begin 7621 :contents-end 7985 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7591 :ID "226F1D9C-7E3B-47D6-8B71-7DBB13D5B9C4" :title (#("PROTEA Call 2015" 0 16 ...)) :parent #4) (section (:begin 7621 :end 7985 :contents-begin 7621 :contents-end 7985 :post-blank 0 :post-affiliated 7621 :parent #5) (paragraph ... #("Apply for PROTEA this year????\n" 0 31 ...)) (paragraph ... #("SCHEDULED: " 0 11 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*weavil][weavil]] [2010-07-28 Wed 14:41]" :begin 1948 :end 2269 :pre-blank 0 :contents-begin 2086 :contents-end 2269 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 1948 :closed (timestamp ...) :HASH "261663a2f7b921834f9161afa1636da1" :TOODLEDOID "178564797" :title (... ...) :parent #4) (section (:begin 2086 :end 2269 :contents-begin 2086 :contents-end 2269 :post-blank 0 :post-affiliated 2086 :parent #5) (paragraph ... #("What is the proportion of emerging as adults from the eggs layed?\n" 0 66 ...)))) (headline (:raw-value "[[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/nsa.org::*emergenceMidge%20#%20FIX%20THE%20DEPENDANCE%20ON%20THE%20NUMBER%20OF%20FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!][emergenceMidge # FIX THE DEPENDANCE ON THE NUMBER OF FLOWERS!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!]] [2011-01-05 Wed 15:11] %&" :begin 2269 :end 2720 :pre-blank 0 :contents-begin 2603 :contents-end 2720 :level 2 :priority nil :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2269 :closed (timestamp ...) :HASH "deecd4f8a0f49eafa6c4fee250f67d59" :TOODLEDOID "178564799" :title (... ... #("%&" 0 2 ...)) :parent #4) (section (:begin 2603 :end 2721 :contents-begin 2603 :contents-end 2720 :post-blank 1 :post-affiliated 2603 :parent #5)))) (headline (:raw-value "New Notes from Mobile-org" :begin 2721 :end 2749 :pre-blank 0 :contents-begin nil :contents-end nil :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2721 :title (#("New Notes from Mobile-org" 0 25 ...)) :parent #3)) (headline (:raw-value "Tasks" :begin 2749 :end 11412 :pre-blank 0 :contents-begin 2757 :contents-end 11412 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2749 :title (#("Tasks" 0 5 ...)) :parent #3) (headline (:raw-value "Put org variables for R in environment / namespace" :begin 2757 :end 3227 :pre-blank 0 :contents-begin 2821 :contents-end 3227 :level 2 :priority 67 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 2757 :title (#("Put org variables for R in environment / namespace" 0 50 ...)) :parent #4) (section (:begin 2821 :end 3227 :contents-begin 2821 :contents-end 3227 :post-blank 0 :post-affiliated 2821 :parent #5) (paragraph ... #("The idea is to put the variables passed on from org to R in an\nenvironment which can be locked to avoid accidental overwriting of\nvariables. \nFor a possible approach see " 0 171 ...) ... #("\nSCHEDULED: " 0 12 ...) ... #("\nDEADLINE: " 0 12 ...) ... #("\n" 0 1 ...)) (drawer ... ...))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp ...) :title (#("Write Nugget for CIB" 0 20 ...)) :parent #4) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #5) (paragraph ... #("DEADLINE: " 0 10 ...) ... #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 ...)) (paragraph ... #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 ...)) (paragraph ... #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 ...)) (paragraph ... #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 ...) ... #("\n" 0 1 ...)) (paragraph ... #("If you can send me some text with a picture or two, it will be great.\n" 0 70 ...)) (paragraph ... #("Many thanks. Have a great week.\n" 0 32 ...)) (paragraph ... #("Kind regards\nDorette\n" 0 21 ...)) (paragraph ... #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 ...) ... #("\nReducing the rate and impacts of biological invasions\n" 0 55 ...)) (paragraph ... #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 ...) ... #("\n[2. Krug & Richardson 2014 EcolModelling PROOFS" 0 48 ...) ... #("--- application/pdf; Krug & Richardson 2014 EcolModelling PROOFS" 0 64 ...) ... #("]...\n" 0 5 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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(paragraph ... #(" packages ‘climatol’, ‘earthmovdist’, ‘logger’, ‘manipulate’, ‘prioritization’, ‘roxygen3’, ‘rstudio’, ‘TSS’ are not available (for R version 3.1.1)\n2: In install.packages(lib = lib <- .libPaths()" 0 196 ...) ... #(", pkgs = as.data.frame(installed.packages(lib), :\n installation of package ‘rgdal’ had non-zero exit status\n" 0 110 ...)))) (headline (:raw-value "Make Figures for Connie" :begin 9930 :end 10234 :pre-blank 1 :contents-begin 9968 :contents-end 10234 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 9930 :title (#("Make Figures for Connie" 0 23 ...)) :parent #4) (section (:begin 9968 :end 10234 :contents-begin 9968 :contents-end 10234 :post-blank 0 :post-affiliated 9968 :parent #5) (paragraph ... #("DEADLINE: " 0 11 ...) ... #("\n" 0 1 ...)) (drawer ... ...) (paragraph ... ... #("\n" 0 1 ...)))) 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Krug: Creating Namespace and locking" 0 57 (:parent #5))) #("\nSCHEDULED: " 0 12 (:parent #4)) (timestamp (:type active :raw-value "<2014-02-21 Fri 10:36>" :year-start 2014 :month-start 2 :day-start 21 :hour-start 10 :minute-start 36 :year-end 2014 :month-end 2 :day-end 21 :hour-end 10 :minute-end 36 :begin 3103 :end 3125 :post-blank 0 :parent #4)) #("\nDEADLINE: " 0 12 (:parent #4)) (timestamp (:type active :raw-value "<2014-02-21 Fri 10:36>" :year-start 2014 :month-start 2 :day-start 21 :hour-start 10 :minute-start 36 :year-end 2014 :month-end 2 :day-end 21 :hour-end 10 :minute-end 36 :begin 3137 :end 3159 :post-blank 0 :parent #4)) #("\n" 0 1 (:parent #4))) (drawer (:begin 3160 :end 3227 :drawer-name "PROPERTIES" :contents-begin 3173 :contents-end 3221 :post-blank 0 :post-affiliated 3160 :parent #3) (paragraph (:begin 3173 :end 3221 :contents-begin 3173 :contents-end 3221 :post-blank 0 :post-affiliated 3173 :parent #4) #(":ID: 94655E5B-4B05-471B-8F8A-46C534830EC0\n" 0 48 (:parent #5)))))) (headline (:raw-value "Write Nugget for CIB" :begin 3227 :end 5116 :pre-blank 0 :contents-begin 3261 :contents-end 5116 :level 2 :priority 68 :tags nil :todo-keyword "DONE" :todo-type done :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 3227 :scheduled (timestamp (:type active :raw-value "<2014-02-25 Tue 10:18>" :year-start 2014 :month-start 2 :day-start 25 :hour-start 10 :minute-start 18 :year-end 2014 :month-end 2 :day-end 25 :hour-end 10 :minute-end 18 :begin 3272 :end 3294 :post-blank 0)) :title (#("Write Nugget for CIB" 0 20 (:parent #2))) :parent #1) (section (:begin 3261 :end 5116 :contents-begin 3261 :contents-end 5116 :post-blank 0 :post-affiliated 3261 :parent #2) (paragraph (:begin 3295 :end 3598 :contents-begin 3295 :contents-end 3597 :post-blank 1 :post-affiliated 3295 :parent #3) #("DEADLINE: " 0 10 (:parent #4)) (timestamp (:type active :raw-value "<2014-02-28 Fri 10:18>" :year-start 2014 :month-start 2 :day-start 28 :hour-start 10 :minute-start 18 :year-end 2014 :month-end 2 :day-end 28 :hour-end 10 :minute-end 18 :begin 3305 :end 3327 :post-blank 0 :parent #4)) #("\nFrom: \"Du Plessis, D, Mej <dorette@sun.ac.za>\" <dorette@sun.ac.za>\nSubject: Nugget on Ecological Modelling paper\nTo: \"Rainer@krugs.de\" <Rainer@krugs.de>, \"RMKrug@gmail.com\" <RMKrug@gmail.com>\nDate: Mon, 24 Feb 2014 13:46:06 +0000 (19 hours, 30 minutes, 34 seconds ago)\n" 0 270 (:parent #4))) (paragraph (:begin 3598 :end 3686 :contents-begin 3598 :contents-end 3685 :post-blank 1 :post-affiliated 3598 :parent #3) #("Hi Rainer\nHope you are keeping well. Congrats with your paper in Ecological Modelling!\n" 0 87 (:parent #4))) (paragraph (:begin 3686 :end 4026 :contents-begin 3686 :contents-end 4025 :post-blank 1 :post-affiliated 3686 :parent #3) #("Could you perhaps write up a \"nugget\" for the CIB website on the Ecological Modelling paper?\nWe find that that the nuggets give good exposure to the paper when\npeople visit the CIB website and through our Facebook page. If so, can\nyou let me know?\nWe can prepare the text so long so that it can go out as soon as the paper appears online.\n" 0 339 (:parent #4))) (paragraph (:begin 4026 :end 4198 :contents-begin 4026 :contents-end 4197 :post-blank 1 :post-affiliated 4026 :parent #3) #("The nuggets are usually a short (approximately 350 words) summary of\nthe research aimed at the layperson. For a few examples, visit\n" 0 132 (:parent #4)) (link (:type "http" :path "//academic.sun.ac.za/cib/news.asp" :raw-link "http://academic.sun.ac.za/cib/news.asp" :application nil :search-option nil :begin 4158 :end 4196 :contents-begin nil :contents-end nil :post-blank 0 :parent #4)) #("\n" 0 1 (:parent #4))) (paragraph (:begin 4198 :end 4269 :contents-begin 4198 :contents-end 4268 :post-blank 1 :post-affiliated 4198 :parent #3) #("If you can send me some text with a picture or two, it will be great.\n" 0 70 (:parent #4))) (paragraph (:begin 4269 :end 4302 :contents-begin 4269 :contents-end 4301 :post-blank 1 :post-affiliated 4269 :parent #3) #("Many thanks. Have a great week.\n" 0 32 (:parent #4))) (paragraph (:begin 4302 :end 4324 :contents-begin 4302 :contents-end 4323 :post-blank 1 :post-affiliated 4302 :parent #3) #("Kind regards\nDorette\n" 0 21 (:parent #4))) (paragraph (:begin 4324 :end 4564 :contents-begin 4324 :contents-end 4560 :post-blank 4 :post-affiliated 4324 :parent #3) #("Outreach Manager\nDST-NRF Centre of Excellence for Invasion Biology\nStellenbosch University\nTel: +27 (0)21 808 2833 * +27 (0)83 3006 278 * dorette@sun.ac.za\n" 0 156 (:parent #4)) (link (:type "http" :path "//www.sun.ac.za/cib/" :raw-link "http://www.sun.ac.za/cib/" :application nil :search-option nil :begin 4480 :end 4505 :contents-begin nil :contents-end nil :post-blank 0 :parent #4)) #("\nReducing the rate and impacts of biological invasions\n" 0 55 (:parent #4))) (paragraph (:begin 4564 :end 4885 :contents-begin 4564 :contents-end 4884 :post-blank 1 :post-affiliated 4564 :parent #3) #("The integrity and confidentiality of this email is governed by these\nterms / Hierdie terme bepaal die integriteit en vertroulikheid van\nhierdie epos. " 0 150 (:parent #4)) (link (:type "http" :path "//www.sun.ac.za/emaildisclaimer" :raw-link "http://www.sun.ac.za/emaildisclaimer" :application nil :search-option nil :begin 4714 :end 4750 :contents-begin nil :contents-end nil :post-blank 0 :parent #4)) #("\n[2. 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56 (:parent #5))) #("\n" 0 1 (:parent #4))))) (headline (:raw-value "Further analyse Forest data" :begin 7985 :end 8587 :pre-blank 0 :contents-begin 8026 :contents-end 8587 :level 2 :priority 68 :tags nil :todo-keyword "TODO" :todo-type todo :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 7985 :ID "BD3FFA8B-1E81-444C-BE0E-35F4628569EF" :title (#("Further analyse Forest data" 0 27 (:parent #2))) :parent #1) (section (:begin 8026 :end 8587 :contents-begin 8026 :contents-end 8587 :post-blank 0 :post-affiliated 8026 :parent #2) (paragraph (:begin 8094 :end 8162 :contents-begin 8094 :contents-end 8162 :post-blank 0 :post-affiliated 8094 :parent #3) #("SCHEDULED: " 0 11 (:parent #4)) (timestamp (:type active :raw-value "<2014-06-11 Wed 10:01>" :year-start 2014 :month-start 6 :day-start 11 :hour-start 10 :minute-start 1 :year-end 2014 :month-end 6 :day-end 11 :hour-end 10 :minute-end 1 :begin 8105 :end 8127 :post-blank 0 :parent #4)) #("\nDEADLINE: " 0 12 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(item (:bullet "- " :begin 8283 :end 8331 :contents-begin 8287 :contents-end 8331 :checkbox nil :counter nil :structure (... ...) :post-blank 0 :post-affiliated 8283 :tag nil :parent #4) (paragraph (:begin 8287 :end 8331 :contents-begin 8287 :contents-end 8331 :post-blank 0 :post-affiliated 8287 :parent #5) #("using other mix categories (95, 90, 85, 80)\n" 0 44 ...)))) (paragraph (:begin 8331 :end 8444 :contents-begin 8331 :contents-end 8443 :post-blank 1 :post-affiliated 8331 :parent #3) #("b) evaluate options for significance tests\nc) create possibly some maps\nd) look into the autocorrellation issue\n" 0 112 (:parent #4))) (paragraph (:begin 8444 :end 8587 :contents-begin 8444 :contents-end 8587 :post-blank 0 :post-affiliated 8444 :parent #3) (link (:type "gnus" :path "nnimap+Maildir:RMKrugGMAIL.%5BGmail%5D.Sent%20Mail#m24mzr27t9.fsf@krugs.de" :raw-link "gnus:nnimap+Maildir:RMKrugGMAIL.%5BGmail%5D.Sent%20Mail#m24mzr27t9.fsf@krugs.de" :application nil :search-option nil :begin 8444 :end 8586 :contents-begin 8527 :contents-end 8584 :post-blank 0 :parent #4) #("Email from Rainer M. 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:tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13632 :STATUS "c" :WHO "Renate" :title (#("Mocca Kuchen" 0 12 ...)) :parent #3) (section (:begin 13650 :end 13700 :contents-begin 13650 :contents-end 13700 :post-blank 0 :post-affiliated 13650 :parent #4))) (headline (:raw-value "Himbeerboden" :begin 13700 :end 13768 :pre-blank 0 :contents-begin 13718 :contents-end 13768 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13700 :STATUS "c" :WHO "Margit" :title (#("Himbeerboden" 0 12 ...)) :parent #3) (section (:begin 13718 :end 13768 :contents-begin 13718 :contents-end 13768 :post-blank 0 :post-affiliated 13718 :parent #4))) (headline (:raw-value "Überraschung" :begin 13768 :end 13834 :pre-blank 0 :contents-begin 13786 :contents-end 13834 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13768 :STATUS "c" :WHO "Anja" :title (#("Überraschung" 0 12 ...)) :parent #3) (section (:begin 13786 :end 13837 :contents-begin 13786 :contents-end 13834 :post-blank 3 :post-affiliated 13786 :parent #4)))) (headline (:raw-value "Kaltes Buffet" :begin 13837 :end 14656 :pre-blank 0 :contents-begin 13855 :contents-end 14654 :level 3 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 2 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13837 :title (#("Kaltes Buffet" 0 13 (:parent #3))) :parent #2) (headline (:raw-value "Warmes Fleisch" :begin 13855 :end 13911 :pre-blank 0 :contents-begin 13876 :contents-end 13911 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13855 :WHO "Inge" :title (#("Warmes Fleisch" 0 14 ...)) :parent #3) (section (:begin 13876 :end 13911 :contents-begin 13876 :contents-end 13911 :post-blank 0 :post-affiliated 13876 :parent #4))) (headline (:raw-value "Ochsenschwanz Suppe" :begin 13911 :end 13971 :pre-blank 0 :contents-begin 13936 :contents-end 13971 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13911 :WHO "Inge" :title (#("Ochsenschwanz Suppe" 0 19 ...)) :parent #3) (section (:begin 13936 :end 13971 :contents-begin 13936 :contents-end 13971 :post-blank 0 :post-affiliated 13936 :parent #4))) (headline (:raw-value "Gefüllte Eier" :begin 13971 :end 14026 :pre-blank 0 :contents-begin 13990 :contents-end 14026 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 13971 :WHO "I+C+K" :title (#("Gefüllte Eier" 0 13 ...)) :parent #3) (section (:begin 13990 :end 14026 :contents-begin 13990 :contents-end 14026 :post-blank 0 :post-affiliated 13990 :parent #4))) (headline (:raw-value "Käseplatte" :begin 14026 :end 14076 :pre-blank 0 :contents-begin 14042 :contents-end 14076 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14026 :WHO "C+R" :title (#("Käseplatte" 0 10 ...)) :parent #3) (section (:begin 14042 :end 14076 :contents-begin 14042 :contents-end 14076 :post-blank 0 :post-affiliated 14042 :parent #4))) (headline (:raw-value "Hessische Wurstplatte" :begin 14076 :end 14138 :pre-blank 0 :contents-begin 14103 :contents-end 14138 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14076 :WHO "Inge" :title (#("Hessische Wurstplatte" 0 21 ...)) :parent #3) (section (:begin 14103 :end 14138 :contents-begin 14103 :contents-end 14138 :post-blank 0 :post-affiliated 14103 :parent #4))) (headline (:raw-value "Nudelsalat" :begin 14138 :end 14189 :pre-blank 0 :contents-begin 14154 :contents-end 14189 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14138 :WHO "Inge" :title (#("Nudelsalat" 0 10 ...)) :parent #3) (section (:begin 14154 :end 14189 :contents-begin 14154 :contents-end 14189 :post-blank 0 :post-affiliated 14154 :parent #4))) (headline (:raw-value "Nudelsalat Vegetarisch" :begin 14189 :end 14252 :pre-blank 0 :contents-begin 14217 :contents-end 14252 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14189 :WHO "Inge" :title (#("Nudelsalat Vegetarisch" 0 22 ...)) :parent #3) (section (:begin 14217 :end 14252 :contents-begin 14217 :contents-end 14252 :post-blank 0 :post-affiliated 14217 :parent #4))) (headline (:raw-value "Kartoffelsalat" :begin 14252 :end 14307 :pre-blank 0 :contents-begin 14272 :contents-end 14307 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14252 :WHO "Inge" :title (#("Kartoffelsalat" 0 14 ...)) :parent #3) (section (:begin 14272 :end 14307 :contents-begin 14272 :contents-end 14307 :post-blank 0 :post-affiliated 14272 :parent #4))) (headline (:raw-value "Heringssalat" :begin 14307 :end 14360 :pre-blank 0 :contents-begin 14325 :contents-end 14360 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14307 :WHO "Inge" :title (#("Heringssalat" 0 12 ...)) :parent #3) (section (:begin 14325 :end 14360 :contents-begin 14325 :contents-end 14360 :post-blank 0 :post-affiliated 14325 :parent #4))) (headline (:raw-value "Matjes" :begin 14360 :end 14408 :pre-blank 0 :contents-begin 14372 :contents-end 14407 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 1 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14360 :WHO "Inge" :title (#("Matjes" 0 6 ...)) :parent #3) (section (:begin 14372 :end 14408 :contents-begin 14372 :contents-end 14407 :post-blank 1 :post-affiliated 14372 :parent #4))) (headline (:raw-value "Sauerfleisch" :begin 14408 :end 14463 :pre-blank 0 :contents-begin 14426 :contents-end 14463 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14408 :WHO "Dieter" :title (#("Sauerfleisch" 0 12 ...)) :parent #3) (section (:begin 14426 :end 14463 :contents-begin 14426 :contents-end 14463 :post-blank 0 :post-affiliated 14426 :parent #4))) (headline (:raw-value "Wurstsalat" :begin 14463 :end 14516 :pre-blank 0 :contents-begin 14479 :contents-end 14516 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14463 :WHO "Dieter" :title (#("Wurstsalat" 0 10 ...)) :parent #3) (section (:begin 14479 :end 14516 :contents-begin 14479 :contents-end 14516 :post-blank 0 :post-affiliated 14479 :parent #4))) (headline (:raw-value "Eisbein" :begin 14516 :end 14529 :pre-blank 0 :contents-begin nil :contents-end nil :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14516 :title (#("Eisbein" 0 7 ...)) :parent #3)) (headline (:raw-value "Pickels" :begin 14529 :end 14542 :pre-blank 0 :contents-begin nil :contents-end nil :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14529 :title (#("Pickels" 0 7 ...)) :parent #3)) (headline (:raw-value "Gemüse" :begin 14542 :end 14554 :pre-blank 0 :contents-begin nil :contents-end nil :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14542 :title (#("Gemüse" 0 6 ...)) :parent #3)) (headline (:raw-value "Baguette" :begin 14554 :end 14603 :pre-blank 0 :contents-begin 14568 :contents-end 14603 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14554 :WHO "Inge" :title (#("Baguette" 0 8 ...)) :parent #3) (section (:begin 14568 :end 14603 :contents-begin 14568 :contents-end 14603 :post-blank 0 :post-affiliated 14568 :parent #4))) (headline (:raw-value "Bauernbrot" :begin 14603 :end 14654 :pre-blank 0 :contents-begin 14619 :contents-end 14654 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14603 :WHO "Inge" :title (#("Bauernbrot" 0 10 ...)) :parent #3) (section (:begin 14619 :end 14656 :contents-begin 14619 :contents-end 14654 :post-blank 2 :post-affiliated 14619 :parent #4)))) (headline (:raw-value "Getränke" :begin 14656 :end 14924 :pre-blank 0 :contents-begin 14669 :contents-end 14924 :level 3 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14656 :title (#("Getränke" 0 8 (:parent #3))) :parent #2) (headline (:raw-value "Bier" :begin 14669 :end 14713 :pre-blank 0 :contents-begin 14679 :contents-end 14713 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14669 :WHO "I+D" :title (#("Bier" 0 4 ...)) :parent #3) (section (:begin 14679 :end 14713 :contents-begin 14679 :contents-end 14713 :post-blank 0 :post-affiliated 14679 :parent #4))) (headline (:raw-value "Wein Weiß & Rot" :begin 14713 :end 14768 :pre-blank 0 :contents-begin 14734 :contents-end 14768 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14713 :WHO "R+C" :title (#("Wein Weiß & Rot" 0 15 ...)) :parent #3) (section (:begin 14734 :end 14768 :contents-begin 14734 :contents-end 14768 :post-blank 0 :post-affiliated 14734 :parent #4))) (headline (:raw-value "Wasser" :begin 14768 :end 14814 :pre-blank 0 :contents-begin 14780 :contents-end 14814 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14768 :WHO "I+D" :title (#("Wasser" 0 6 ...)) :parent #3) (section (:begin 14780 :end 14814 :contents-begin 14780 :contents-end 14814 :post-blank 0 :post-affiliated 14780 :parent #4))) (headline (:raw-value "Cola et al" :begin 14814 :end 14864 :pre-blank 0 :contents-begin 14830 :contents-end 14864 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14814 :WHO "I+D" :title (#("Cola et al" 0 10 ...)) :parent #3) (section (:begin 14830 :end 14864 :contents-begin 14830 :contents-end 14864 :post-blank 0 :post-affiliated 14830 :parent #4))) (headline (:raw-value "Saft (Apfel, Orange)" :begin 14864 :end 14924 :pre-blank 0 :contents-begin 14890 :contents-end 14924 :level 4 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14864 :WHO "I+D" :title (#("Saft (Apfel, Orange)" 0 20 ...)) :parent #3) (section (:begin 14890 :end 14926 :contents-begin 14890 :contents-end 14924 :post-blank 2 :post-affiliated 14890 :parent #4))))) (headline (:raw-value "Note ID: 0BA506C1-16FD-4B77-AD38-D7BBEABF1C65" :begin 14926 :end 14975 :pre-blank 0 :contents-begin nil :contents-end nil :level 2 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14926 :title (#("Note ID: 0BA506C1-16FD-4B77-AD38-D7BBEABF1C65" 0 45 (:parent #2))) :parent #1))) (headline (:raw-value "Talking book - Stevie wonder / Macy gray" :begin 14976 :end 15043 :pre-blank 0 :contents-begin 15019 :contents-end 15043 :level 1 :priority nil :tags nil :todo-keyword nil :todo-type nil :post-blank 0 :footnote-section-p nil :archivedp nil :commentedp nil :post-affiliated 14976 :title (#("Talking book - Stevie wonder / Macy gray" 0 40 (:parent #1))) :parent #0) (section (:begin 15019 :end 15043 :contents-begin 15019 :contents-end 15043 :post-blank 0 :post-affiliated 15019 :parent #1) (paragraph (:begin 15019 :end 15043 :contents-begin 15019 :contents-end 15043 :post-blank 0 :post-affiliated 15019 :parent #2) (timestamp (:type inactive :raw-value "[2015-04-11 sam. 23:16]" :year-start 2015 :month-start 4 :day-start 11 :hour-start 23 :minute-start 16 :year-end 2015 :month-end 4 :day-end 11 :hour-end 23 :minute-end 16 :begin 15019 :end 15042 :post-blank 0 :parent #3)) #("\n" 0 1 (:parent #3)))))) (:export-options nil :input-buffer "notes.org" :input-file "/Users/rainerkrug/org/notes.org" :html-doctype "xhtml-strict" :html-container "div" :description nil :keywords nil :html-html5-fancy nil :html-link-use-abs-url nil :html-link-home "" :html-link-up "" :html-mathjax "" :html-postamble auto :html-preamble t :html-head "" :html-head-extra "" :subtitle nil :html-head-include-default-style t :html-head-include-scripts t :html-allow-name-attribute-in-anchors nil :html-divs ((preamble "div" "preamble") (content "div" "content") (postamble "div" "postamble")) :html-checkbox-type ascii :html-extension "html" :html-footnote-format "<sup>%s</sup>" :html-footnote-separator "<sup>, </sup>" ...))
| org-export-as(html nil nil nil (:output-file "./notes.html"))
| org-export-to-file(html "./notes.html" nil nil nil nil nil)
| org-html-export-to-html(nil nil nil nil)
| (org-open-file (org-html-export-to-html nil s v b))
| (if a (org-html-export-to-html t s v b) (org-open-file (org-html-export-to-html nil s v b)))
| (lambda (a s v b) (if a (org-html-export-to-html t s v b) (org-open-file (org-html-export-to-html nil s v b))))(nil nil nil nil)
| org-export-dispatch(nil)
| call-interactively(org-export-dispatch nil nil)
| command-execute(org-export-dispatch)
|
`----
org and emacs version:
,----
| GNU Emacs 24.5.1 (x86_64-apple-darwin14.3.0, Carbon Version 157 AppKit 1347.57) of 2015-04-13 on Rainers-MacBook-Pro.local
| Org-mode version 8.3beta (release_8.3beta-1115-g8f3946 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)
`----
Any suggestions?
Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
[-- Attachment #2: signature.asc --]
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^ permalink raw reply [flat|nested] 8+ messages in thread
* Bug: Export to html fails when link to header in non existing file in document present WAS: Error export to html - "Org-publish-cache-get: `org-publish-cache-get' called, but no cache present" [8.3beta (release_8.3beta-1115-g8f3946 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)]
2015-05-04 11:47 Bug: Error export to html - "Org-publish-cache-get: `org-publish-cache-get' called, but no cache present" [8.3beta (release_8.3beta-1115-g8f3946 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)] Rainer M Krug
@ 2015-05-06 7:39 ` Rainer M Krug
2015-05-06 10:40 ` Bug: Export to html fails when link to header in non existing file in document present Rasmus
0 siblings, 1 reply; 8+ messages in thread
From: Rainer M Krug @ 2015-05-06 7:39 UTC (permalink / raw)
To: emacs-orgmode
[-- Attachment #1: Type: text/plain, Size: 2041 bytes --]
Hi
more info and a reproducible example:
when exporting the following org file
--8<---------------cut here---------------start------------->8---
* A link to a non existent file
[[file:~/NONEXISTENT.org::*SOMETHING][Link to header in non existing org file]]
--8<---------------cut here---------------end--------------->8---
I get the error
,----
| Org-publish-cache-get: `org-publish-cache-get' called, but no cache present
`----
which goes away when I remove the header as follow:
--8<---------------cut here---------------start------------->8---
* A link to a non existent file
[[file:~/NONEXISTENT.org][Link to non existing org file]]
--8<---------------cut here---------------end--------------->8---
Hope this helps,
Rainer
Rainer M Krug <Rainer@krugs.de> writes:
> Hi
>
> I don't know how long I have this error (just back at the office after
> two weeks away and haven't fone any html export for some time before),
> but even when using
>
> ,----
> | emacs -Q
> `----
>
> and loading the current org, I get the error when exporting to html -
> but not to latex. When using the build in org (8.2.10), the export
> works. The error is:
>
> ,----
> | Org-publish-cache-get: `org-publish-cache-get' called, but no cache present
> `----
>
> org and emacs version:
>
> ,----
> | GNU Emacs 24.5.1 (x86_64-apple-darwin14.3.0, Carbon Version 157
> AppKit 1347.57) of 2015-04-13 on Rainers-MacBook-Pro.local
> | Org-mode version 8.3beta (release_8.3beta-1115-g8f3946 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)
> `----
>
> Any suggestions?
>
> Rainer
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]
^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bug: Export to html fails when link to header in non existing file in document present
2015-05-06 7:39 ` Bug: Export to html fails when link to header in non existing file in document present WAS: " Rainer M Krug
@ 2015-05-06 10:40 ` Rasmus
2015-05-06 12:14 ` Rainer M Krug
0 siblings, 1 reply; 8+ messages in thread
From: Rasmus @ 2015-05-06 10:40 UTC (permalink / raw)
To: emacs-orgmode
Hi,
Rainer M Krug <Rainer@krugs.de> writes:
> more info and a reproducible example:
>
> when exporting the following org file
>
> * A link to a non existent file
> [[file:~/NONEXISTENT.org::*SOMETHING][Link to header in non existing org file]]
What do you expect?
Should the "::*SOMETHING"-part be discarded without warning?
The internal link cannot be known without the file, as it is of the form
orgheadlineN where N=n+1 and n is the number of headlines prior to
"*Something"...
Though perhaps the #-construct should work, as we know the custom-id.
* A link to a non existent file
[[file:~/NONEXISTENT.org::#SOMETHING][Link to header in non existing org file]]
—Rasmus
--
Vote for proprietary math!
^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bug: Export to html fails when link to header in non existing file in document present
2015-05-06 10:40 ` Bug: Export to html fails when link to header in non existing file in document present Rasmus
@ 2015-05-06 12:14 ` Rainer M Krug
2015-05-06 13:50 ` Rasmus
0 siblings, 1 reply; 8+ messages in thread
From: Rainer M Krug @ 2015-05-06 12:14 UTC (permalink / raw)
To: Rasmus; +Cc: emacs-orgmode
[-- Attachment #1: Type: text/plain, Size: 1955 bytes --]
Rasmus <rasmus@gmx.us> writes:
> Hi,
>
> Rainer M Krug <Rainer@krugs.de> writes:
>
>> more info and a reproducible example:
>>
>> when exporting the following org file
>>
>> * A link to a non existent file
>> [[file:~/NONEXISTENT.org::*SOMETHING][Link to header in non existing org file]]
>
> What do you expect?
>
> Should the "::*SOMETHING"-part be discarded without warning?
Well - the ideal solution would be a warning (or error message) with a
reference to the link. At the moment, a link to a non existing file is
exported, a link to a section in a non existing produces a cryptic error message.
At the moment, I have no clue how I can find the link.
So I would hope for
1) consistent behavior for the two cases
2) a meaningful warning which helps to find the culprit
3) an html file, where the links do not work, but the export is fine.
or, if 3) is not possible, meaningful error messages which actually help
me to track down the error (I only found out what was causing this error
accidentally)
>
> The internal link cannot be known without the file, as it is of the form
> orgheadlineN where N=n+1 and n is the number of headlines prior to
> "*Something"...
Sure - this is obvious.
>
> Though perhaps the #-construct should work, as we know the custom-id.
>
> * A link to a non existent file
> [[file:~/NONEXISTENT.org::#SOMETHING][Link to header in non existing org file]]
To fix this, I have to find the link fierst...
Cheers,
Rainer
>
> —Rasmus
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]
^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bug: Export to html fails when link to header in non existing file in document present
2015-05-06 12:14 ` Rainer M Krug
@ 2015-05-06 13:50 ` Rasmus
2015-05-06 23:04 ` Nicolas Goaziou
0 siblings, 1 reply; 8+ messages in thread
From: Rasmus @ 2015-05-06 13:50 UTC (permalink / raw)
To: rainer; +Cc: emacs-orgmode
[-- Attachment #1: Type: text/plain, Size: 1495 bytes --]
Rainer M Krug <Rainer@krugs.de> writes:
>> What do you expect?
>>
>> Should the "::*SOMETHING"-part be discarded without warning?
>
> Well - the ideal solution would be a warning (or error message) with a
> reference to the link. At the moment, a link to a non existing file is
> exported, a link to a section in a non existing produces a cryptic
> error message.
>
> At the moment, I have no clue how I can find the link.
>
> So I would hope for
>
> 1) consistent behavior for the two cases
> 2) a meaningful warning which helps to find the culprit
> 3) an html file, where the links do not work, but the export is fine.
>
> or, if 3) is not possible, meaningful error messages which actually help
> me to track down the error (I only found out what was causing this error
> accidentally)
The issue with warnings is that I don't see them.... Though an error
seems a bit drastic here.
The attached patch inserts a link without the anchor and issues a warning
if exporting such links without ox-publish.
>> The internal link cannot be known without the file, as it is of the form
>> orgheadlineN where N=n+1 and n is the number of headlines prior to
>> "*Something"...
>
> Sure - this is obvious.
Actually, the error you found is more interesting than what I first
though, as any link with anchors will trigger the error, it seems.
org-publish-cache must be non-nil, which seems to linger on publishing a
project.
—Rasmus
--
Don't panic!!!
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From 8e1dd6c43e8a358a85a8034825c475199bd2ffb7 Mon Sep 17 00:00:00 2001
From: Rasmus <rasmus@gmx.us>
Date: Wed, 6 May 2015 15:44:26 +0200
Subject: [PATCH] ox-html: Improve links with search
* ox-html.el (org-html-link): Handle links with search when
not using Publish.
Reported-by: Rainer M Krug <Rainer@krugs.de>
<http://permalink.gmane.org/gmane.emacs.orgmode/97420>
---
lisp/ox-html.el | 18 ++++++++++++------
1 file changed, 12 insertions(+), 6 deletions(-)
diff --git a/lisp/ox-html.el b/lisp/ox-html.el
index 6c712f6..0e69e6a 100644
--- a/lisp/ox-html.el
+++ b/lisp/ox-html.el
@@ -2849,12 +2849,18 @@ INFO is a plist holding contextual information. See
;; relative to a custom-id, a headline title a name,
;; a target or a radio-target.
(let ((option (org-element-property :search-option link)))
- (if (not option) raw-path
- (concat raw-path
- "#"
- (org-publish-resolve-external-link
- option
- (org-element-property :path link))))))
+ (cond ((and option org-publish-cache)
+ (concat raw-path
+ "#"
+ (org-publish-resolve-external-link
+ option
+ (org-element-property :path link))))
+ ((and option (not org-publish-cache))
+ (org-display-warning
+ (format "Link to file %s cannot be resolved. Please use Org Publish."
+ (org-element-property :path link)))
+ raw-path)
+ (t raw-path))))
(t raw-path)))
;; Extract attributes from parent's paragraph. HACK: Only do
;; this for the first link in parent (inner image link for
--
2.4.0
^ permalink raw reply related [flat|nested] 8+ messages in thread
* Re: Bug: Export to html fails when link to header in non existing file in document present
2015-05-06 13:50 ` Rasmus
@ 2015-05-06 23:04 ` Nicolas Goaziou
2015-05-07 9:55 ` Rainer M Krug
0 siblings, 1 reply; 8+ messages in thread
From: Nicolas Goaziou @ 2015-05-06 23:04 UTC (permalink / raw)
To: Rasmus; +Cc: emacs-orgmode
Hello,
Rasmus <rasmus@gmx.us> writes:
> Actually, the error you found is more interesting than what I first
> though, as any link with anchors will trigger the error, it seems.
> org-publish-cache must be non-nil, which seems to linger on publishing a
> project.
Correct. External references can only be solved using publishing.
> From 8e1dd6c43e8a358a85a8034825c475199bd2ffb7 Mon Sep 17 00:00:00 2001
> From: Rasmus <rasmus@gmx.us>
> Date: Wed, 6 May 2015 15:44:26 +0200
> Subject: [PATCH] ox-html: Improve links with search
>
> * ox-html.el (org-html-link): Handle links with search when
> not using Publish.
Thank you.
However, I "fixed" it at ox-publish.el's level in
e42c1611094a689f77f09cc66c5a50fb1e3ac7bb instead, and throw an error
instead of a warning.
Regards,
--
Nicolas Goaziou
^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bug: Export to html fails when link to header in non existing file in document present
2015-05-06 23:04 ` Nicolas Goaziou
@ 2015-05-07 9:55 ` Rainer M Krug
2015-05-07 20:18 ` Nicolas Goaziou
0 siblings, 1 reply; 8+ messages in thread
From: Rainer M Krug @ 2015-05-07 9:55 UTC (permalink / raw)
To: Rasmus; +Cc: emacs-orgmode
[-- Attachment #1: Type: text/plain, Size: 2084 bytes --]
Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:
> Hello,
>
> Rasmus <rasmus@gmx.us> writes:
>
>> Actually, the error you found is more interesting than what I first
>> though, as any link with anchors will trigger the error, it seems.
>> org-publish-cache must be non-nil, which seems to linger on publishing a
>> project.
>
> Correct. External references can only be solved using publishing.
>
>> From 8e1dd6c43e8a358a85a8034825c475199bd2ffb7 Mon Sep 17 00:00:00 2001
>> From: Rasmus <rasmus@gmx.us>
>> Date: Wed, 6 May 2015 15:44:26 +0200
>> Subject: [PATCH] ox-html: Improve links with search
>>
>> * ox-html.el (org-html-link): Handle links with search when
>> not using Publish.
>
> Thank you.
>
> However, I "fixed" it at ox-publish.el's level in
> e42c1611094a689f77f09cc66c5a50fb1e3ac7bb instead, and throw an error
> instead of a warning.
OK - I can see the error now:
,----
| user-error: Reference "29" in file "inst/matlab/org/profil5.m" cannot be resolved without publishing
`----
This helps finding it - thanks.
I don't think it would be possible to give a line number for the org
file where the link is? Or is it possible to jump directly in org to
reference "29"?
What would be really nice is an option which makes it possible to export
the file to html and just leave the non-resolvable links as
non-resolvable links in the html and gives a list of all warnings for
this links.
In my case, I just would like to ave the html export to share results
and the links are mainly for my reference and possibly the final
publish.
Is this somehow possible?
Thanks,
Rainer
>
>
> Regards,
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 494 bytes --]
^ permalink raw reply [flat|nested] 8+ messages in thread
* Re: Bug: Export to html fails when link to header in non existing file in document present
2015-05-07 9:55 ` Rainer M Krug
@ 2015-05-07 20:18 ` Nicolas Goaziou
0 siblings, 0 replies; 8+ messages in thread
From: Nicolas Goaziou @ 2015-05-07 20:18 UTC (permalink / raw)
To: Rainer M Krug; +Cc: emacs-orgmode, Rasmus
Rainer M Krug <Rainer@krugs.de> writes:
> Nicolas Goaziou <mail@nicolasgoaziou.fr> writes:
>
>> Hello,
>>
>> Rasmus <rasmus@gmx.us> writes:
>>
>>> Actually, the error you found is more interesting than what I first
>>> though, as any link with anchors will trigger the error, it seems.
>>> org-publish-cache must be non-nil, which seems to linger on publishing a
>>> project.
>>
>> Correct. External references can only be solved using publishing.
>>
>>> From 8e1dd6c43e8a358a85a8034825c475199bd2ffb7 Mon Sep 17 00:00:00 2001
>>> From: Rasmus <rasmus@gmx.us>
>>> Date: Wed, 6 May 2015 15:44:26 +0200
>>> Subject: [PATCH] ox-html: Improve links with search
>>>
>>> * ox-html.el (org-html-link): Handle links with search when
>>> not using Publish.
>>
>> Thank you.
>>
>> However, I "fixed" it at ox-publish.el's level in
>> e42c1611094a689f77f09cc66c5a50fb1e3ac7bb instead, and throw an error
>> instead of a warning.
>
> OK - I can see the error now:
>
> ,----
> | user-error: Reference "29" in file "inst/matlab/org/profil5.m" cannot be resolved without publishing
> `----
>
> This helps finding it - thanks.
> I don't think it would be possible to give a line number for the org
> file where the link is?
This is not possible.
> Or is it possible to jump directly in org to reference "29"?
You may use `org-open-link-from-string'.
> What would be really nice is an option which makes it possible to export
> the file to html and just leave the non-resolvable links as
> non-resolvable links in the html and gives a list of all warnings for
> this links.
I changed the error into a message, with a dummy link.
Regards,
^ permalink raw reply [flat|nested] 8+ messages in thread
end of thread, other threads:[~2015-05-07 20:16 UTC | newest]
Thread overview: 8+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2015-05-04 11:47 Bug: Error export to html - "Org-publish-cache-get: `org-publish-cache-get' called, but no cache present" [8.3beta (release_8.3beta-1115-g8f3946 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)] Rainer M Krug
2015-05-06 7:39 ` Bug: Export to html fails when link to header in non existing file in document present WAS: " Rainer M Krug
2015-05-06 10:40 ` Bug: Export to html fails when link to header in non existing file in document present Rasmus
2015-05-06 12:14 ` Rainer M Krug
2015-05-06 13:50 ` Rasmus
2015-05-06 23:04 ` Nicolas Goaziou
2015-05-07 9:55 ` Rainer M Krug
2015-05-07 20:18 ` Nicolas Goaziou
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