From: Rainer M Krug <Rainer@krugs.de>
To: Thorsten Jolitz <tjolitz@gmail.com>
Cc: emacs-orgmode@gnu.org
Subject: Re: Folding in iESS R buffer
Date: Tue, 27 May 2014 11:00:20 +0200 [thread overview]
Message-ID: <m2lhtnlhp7.fsf@krugs.de> (raw)
In-Reply-To: <m2ppizlj2x.fsf@krugs.de> (Rainer M. Krug's message of "Tue, 27 May 2014 10:30:30 +0200")
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Rainer M Krug <Rainer@krugs.de> writes:
> Thorsten Jolitz <tjolitz@gmail.com> writes:
>
>> Rainer M Krug <Rainer@krugs.de> writes:
>>
>> Hi Rainer,
>>
>> sorry for the late reply, I was offline some time.
>
> No problem.
>
>>
>>> I have modified the variable transfer in ob-R.el so that the variable
>>> transfer code is enclosed as can be seen below.
>>>
>>> My idea is that I can fold the R output so that the variable transfer is
>>> collapsed. I understand that I can use one of the org-outside-org minor
>>> modes [1] (presumibly utshine?) - but I can't figure out how.
>>>
>>> My questions are:
>>>
>>> 1) which enclosing should I use to fold the transfer code away?
>>
>> Outshine is like Org, no enclosing, but file structuring with
>> (outcommented) headlines.
>
> So everything after the outcommented headline will be folded - so if I
> only want to fold one part, I have to use
>
> ,----
> | ## * If this is folded
> | SOME R CODE
> | ## * This not anymore
> | SOME R CODE
> `----
>
> which I could fold to
>
> ,----
> | ## * If this is folded [...]
> | ## * This not anymore
> | SOME R CODE
> `----
>
> correct?
I just tried it, and get the following:
Unfolded:
,----
| >
| + . + ## * Variable Transfer from org
| ##########################################################
| ## org:variables environment created and in search path
| ##########################################################
|
| ## * Back to normal code
| here it is @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
| > >
`----
where "here it is @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@" is output
From normal R code in a source block evaluated.
Folded:
,----
| >
| + . + ## * Variable Transfer from org
| ##########################################################...
| here it is @@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@@
| > >
`----
Is this what is expected?
Rainer
>
>>
>>> 2) which minor mode should I use for this and how can I configure it?
>>
>> I'm not sure if I understand. When you use ob-R.el, you work in Org
>> files with R source blocks, right?
>
> Correct.
>
>> When do you want to fold the R output below? When you are in org-mode
>> or when editing source blocks in R-mode?
>
> The evaluated code - not in the source code.
>
>>
>> In the former case, Org-mode is in charge and you don't need
>> outshine.
>
> True.
>
>> In the latter case, you could install outshine as described in the
>> docs and then add outline-minor-mode to the ESS/R mode hook, i.e.
>
> That's it.
>
>>
>> ,-------------------------------------------------------------------------------
>> | ;; outline
>> | (when (require 'outline nil t)
>> | (add-hook 'ess-mode-hook 'outline-minor-mode)) ; is that the hook for R-mode?
>> |
>> | ;; outshine
>> | (when (require 'outshine nil t)
>> | (add-hook 'outline-minor-mode-hook 'outshine-hook-function)
>> | (setq outshine-use-speed-commands t))
>> `-------------------------------------------------------------------------------
>>
>> Outshine headlines are outcommented Org headlines, i.e.
>>
>> ,----------------------------------
>> | * Beginning org variable transfer
>> `----------------------------------
>>
>> becomes
>>
>> ,----------
>> | ## * Beginning org variable transfer
>> `----------
>>
>> in R-mode.
>>
>> The R output would become an outshine-subtree with the header above,
>> just like in Org-mode, possibly surrounded by other subtrees.
>
> Sounds great - thanks a lot. I will try it out,
>
> Rainer
>
>>
>>> --8<---------------cut here---------------start------------->8---
>>>> ######################################################################
>>> ## Beginning org variable transfer
>>> try(detach(.org_variables_), silent=TRUE)
>>> .org_variables_ <- new.env()
>>> assign( 'COLUMNS', read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428U4A", header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ ); lockBinding('COLUMNS', .org_variables_)
>>> assign( 'COLS_TO_EVAL', read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428hCH", header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ ); lockBinding('COLS_TO_EVAL', .org_variables_)
>>> assign( 'ALLSPECIES', read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428uMN", header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ ); lockBinding('ALLSPECIES', .org_variables_)
>>> assign( 'SPECIES', read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-744287WT", header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ ); lockBinding('SPECIES', .org_variables_)
>>> assign( 'YEARS', read.table("/var/folders/50/wcr5bjwn75q595n6x82gxj280000gn/T/babel-74428N93/R-import-74428IhZ", header=TRUE, row.names=1, sep="\t", as.is=TRUE ), envir = .org_variables_ ); lockBinding('YEARS', .org_variables_)
>>> assign('PRESENT', 2008, envir = .org_variables_); lockBinding('PRESENT', .org_variables_)
>>> assign('MINEFFORT', 3, envir = .org_variables_); lockBinding('MINEFFORT', .org_variables_)
>>> assign('PROPTRAIN', 0.6, envir = .org_variables_); lockBinding('PROPTRAIN', .org_variables_)
>>> assign('RNGSEED', 13, envir = .org_variables_); lockBinding('RNGSEED', .org_variables_)
>>> assign('RNGKIND', "Mersenne-Twister", envir = .org_variables_); lockBinding('RNGKIND', .org_variables_)
>>> assign('RNGNORMALKIND', "Inversion", envir = .org_variables_); lockBinding('RNGNORMALKIND', .org_variables_)
>>> assign('REFGRID', "./refGrid_8km.rds", envir = .org_variables_); lockBinding('REFGRID', .org_variables_)
>>> assign('IFN', "./__BOX__/IFN/DB_IFN/rds/tabplot.rds", envir = .org_variables_); lockBinding('IFN', .org_variables_)
>>> assign('IFNCOUNT', "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.count.8km.rds", envir = .org_variables_); lockBinding('IFNCOUNT', .org_variables_)
>>> assign('IFNMEAN', "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.mean.8km.rds", envir = .org_variables_); lockBinding('IFNMEAN', .org_variables_)
>>> assign('IFNPRES', "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.pres.8km.rds", envir = .org_variables_); lockBinding('IFNPRES', .org_variables_)
>>> assign('IFNSD', "./__BOX__/IFN/DB_IFN/rdsRasterized/tabplot.sd.8km.rds", envir = .org_variables_); lockBinding('IFNSD', .org_variables_)
>>> assign('IFNTABTREE', "./__BOX__/IFN/DB_IFN/rds/tabtree.rds", envir = .org_variables_); lockBinding('IFNTABTREE', .org_variables_)
>>> lockEnvironment(.org_variables_)
>>> attach(.org_variables_)
>>> save(.org_variables_, file='org_variables.RData')
>>> ## end org variable transfer
>>> ######################################################################
>>> --8<---------------cut here---------------end--------------->8---
>>>
>>>
>>> Footnotes:
>>> [1] http://orgmode.org/worg/org-tutorials/org-outside-org.html
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
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next prev parent reply other threads:[~2014-05-27 9:00 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-05-05 13:25 Folding in iESS R buffer Rainer M Krug
2014-05-27 8:21 ` Thorsten Jolitz
2014-05-27 8:30 ` Rainer M Krug
2014-05-27 9:00 ` Rainer M Krug [this message]
2014-05-27 9:43 ` Thorsten Jolitz
2014-05-27 12:13 ` Rainer M Krug
2014-05-27 21:42 ` Thorsten Jolitz
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