From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp12.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id gEmbE4VnzWHm1QAAgWs5BA (envelope-from ) for ; Thu, 30 Dec 2021 09:02:13 +0100 Received: from aspmx1.migadu.com ([2001:41d0:8:6d80::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp12.migadu.com with LMTPS id gDkJEIVnzWG9zgAAauVa8A (envelope-from ) for ; Thu, 30 Dec 2021 09:02:13 +0100 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id EFFDCC17F for ; Thu, 30 Dec 2021 09:02:12 +0100 (CET) Received: from localhost ([::1]:42364 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1n2qO4-0004PO-51 for larch@yhetil.org; Thu, 30 Dec 2021 03:02:12 -0500 Received: from eggs.gnu.org ([209.51.188.92]:58690) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1n2qMw-0004P4-V7 for emacs-orgmode@gnu.org; Thu, 30 Dec 2021 03:01:02 -0500 Received: from debbugs.gnu.org ([209.51.188.43]:39747) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_128_GCM_SHA256:128) (Exim 4.90_1) (envelope-from ) id 1n2qMw-0008WS-JM for emacs-orgmode@gnu.org; Thu, 30 Dec 2021 03:01:02 -0500 Received: from Debian-debbugs by debbugs.gnu.org with local (Exim 4.84_2) (envelope-from ) id 1n2qMw-0008SK-Iq for emacs-orgmode@gnu.org; Thu, 30 Dec 2021 03:01:02 -0500 X-Loop: help-debbugs@gnu.org Subject: bug#52545: 29.0.50; Make org-babel-execute-buffer ignore irrelevant src blocks Resent-From: Rudolf =?UTF-8?Q?Adamkovi=C4=8D?= Original-Sender: "Debbugs-submit" Resent-CC: emacs-orgmode@gnu.org Resent-Date: Thu, 30 Dec 2021 08:01:02 +0000 Resent-Message-ID: Resent-Sender: help-debbugs@gnu.org X-GNU-PR-Message: followup 52545 X-GNU-PR-Package: org-mode X-GNU-PR-Keywords: To: "Berry, Charles" Cc: Kyle Meyer , "52545@debbugs.gnu.org" <52545@debbugs.gnu.org>, Ihor Radchenko Received: via spool by 52545-submit@debbugs.gnu.org id=B52545.164085121329559 (code B ref 52545); Thu, 30 Dec 2021 08:01:02 +0000 Received: (at 52545) by debbugs.gnu.org; 30 Dec 2021 08:00:13 +0000 Received: from localhost ([127.0.0.1]:51293 helo=debbugs.gnu.org) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n2qM9-0007gD-02 for submit@debbugs.gnu.org; Thu, 30 Dec 2021 03:00:13 -0500 Received: from pv50p00im-ztdg10021801.me.com ([17.58.6.56]:50918) by debbugs.gnu.org with esmtp (Exim 4.84_2) (envelope-from ) id 1n2qM7-0007Xt-IG for 52545@debbugs.gnu.org; Thu, 30 Dec 2021 03:00:11 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=me.com; s=1a1hai; t=1640851205; bh=sef47vBqRvTgFlEDu0LAREyjZ5orfQFX9uN4vXIiwGI=; h=From:To:Subject:Date:Message-ID:MIME-Version:Content-Type; b=lrVPTiQpIGBR3k6uPSf6FWqA1ZiaCkjbLj5Tn0HRp4captwKkjg8OMLX6SZJYd8gm WIWku1GxZ/ku/pxPLVZZPNsI/LtreWjHdbdhkprDH3YSnYb4bezNBFk4xVvmvpCU3Y vZwhXsURca3jz5VBmq2LFz+PwtjewU2L8Zk/JNqy7giVL/uuAtsKoRizut2EBFUa2g kmEcY4qvHvkqzAqMiSCCbApgDLodfG29YD6LB6EfzALKPiwFAM1Bpz2u8PFacj6ySH Yb2Nigkvs8qyIJ8ubxg6Bb9Lqh42O9bs0mqB7/agXI4FqULiE7TjmI7wpZMVymawLt xB5RKO7SuoEiQ== Received: from Workstation.local (78-141-116-131.dynamic.orange.sk [78.141.116.131]) by pv50p00im-ztdg10021801.me.com (Postfix) with ESMTPSA id B7113160116; Thu, 30 Dec 2021 08:00:02 +0000 (UTC) In-Reply-To: References: <87ilvnx29d.fsf@kyleam.com> <87y24ib5v1.fsf@localhost> <87mtkssmth.fsf@localhost> <8735mitzij.fsf@localhost> <840BA83C-A261-49FD-8FE5-EFEEA2DDEBCB@health.ucsd.edu> Date: Thu, 30 Dec 2021 09:00:00 +0100 Message-ID: MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable X-Proofpoint-Virus-Version: vendor=fsecure engine=2.50.10434:6.0.425, 18.0.790 definitions=2021-12-29_06:2021-12-29, 2021-12-29 signatures=0 X-Proofpoint-Spam-Details: rule=notspam policy=default score=0 suspectscore=0 malwarescore=0 phishscore=0 bulkscore=0 spamscore=0 clxscore=1011 mlxscore=0 mlxlogscore=734 adultscore=0 classifier=spam adjust=0 reason=mlx scancount=1 engine=8.0.1-2009150000 definitions=main-2112300044 X-BeenThere: debbugs-submit@debbugs.gnu.org X-Mailman-Version: 2.1.18 Precedence: list X-BeenThere: emacs-orgmode@gnu.org List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: "Emacs-orgmode" Reply-to: Rudolf =?UTF-8?Q?Adamkovi=C4=8D?= From: Rudolf =?UTF-8?Q?Adamkovi=C4=8D?= via "General discussions about Org-mode." X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1640851333; h=from:from:sender:sender:reply-to:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding:resent-cc: resent-from:resent-sender:resent-message-id:in-reply-to:in-reply-to: references:references:list-id:list-help:list-unsubscribe: list-subscribe:list-post:dkim-signature; bh=sef47vBqRvTgFlEDu0LAREyjZ5orfQFX9uN4vXIiwGI=; b=VuFTaz9qjVHoZztZ89DuaaSr/c4k9FzpmTjP/9ksfbDwf8VMjkLbe9dFr9uNoKhWt+b24u YyerT6/zLkWbLyS2F61Ff+DdFr8Oj1Yn6TluPldmlDowE6pjgKBiDcjEDCqZMiSagfOGG8 QWKCs/Lu6DSEntiEd6AAcxTx6kHpUzLmxfylhpnRneVKgi9nsIjRp0lmffqmBmxva9vTJf xIAcK9KZRzqNTREAKE1JU3XXGJYG9Korm4N0xT5uStDeY4cLDSD2H0Gj4M7rsypb4VjYDj tuItG0l9IG1bqWv3Ufe0FW+Hxxy/y4cgCZGKoNy9PNE7vJq6m2IA8Ixwa5DLOw== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1640851333; a=rsa-sha256; cv=none; b=jRRsxH2oHie6jx+7VN3LQBsEiMFy5oEinpzjl9UGrDhvfdgOGva/WB6Zm0dAYhl4XGnKeg UuXlczY5ocTTWCQI8orVljk1lE682NMvJCgUoFBAi2OoAMeMAoWAF71Q3xm5l1yKOu/6at sHTo10Go2uVzxjDib2zXYVxrX6Do1lN8cKaR4MehH9PuWJsudzfy/DsSTywMMqdTEskTVu g19hpeWh0YNuCUP8YdI4Jgd9i7TtJgcDev5IMPyEsmSuQt1KwYyxguRTpAQO0mdjA/kHsW YdqRw0YsAYFeJnJ2AlgcIKhXNA075BXMR7QHZJJGmzjIqW2OOHFRG3b3kQ0mZA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=me.com header.s=1a1hai header.b=lrVPTiQp; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -3.67 Authentication-Results: aspmx1.migadu.com; dkim=fail ("headers rsa verify failed") header.d=me.com header.s=1a1hai header.b=lrVPTiQp; dmarc=pass (policy=none) header.from=gnu.org; spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: EFFDCC17F X-Spam-Score: -3.67 X-Migadu-Scanner: scn1.migadu.com X-TUID: 36aP9FkJQP1U Rudolf Adamkovi=C4=8D via "General discussions about Org-mode." writes: > Below, I include a typical use case: Org notes about an article with a > corresponding BibTeX entry. Please, ignore the example I gave, as it does not show anything. I apologize it. Below, I provide a good example, one that made me stumble upon the problem. I have a paper that includes BibTeX blocks for references and SQLite blocks to compute results. I expect Org to execute all SQLite without aborting to inform me that it could not execute BibTeX. Further, I expect Org to it without me instructing it, for executing BibTeX does not make sense. #+title: =E2=80=A6 #+author: Rudolf Adamkovi=C4=8D #+email: salutis@me.com #+property: header-args+ :comments link #+cite_export: csl apa.csl #+property: header-args:bibtex+ :exports none #+property: header-args:bibtex+ :eval yes #+options: toc:nil #+latex_header: \usepackage{setspace} #+latex_header: \doublespacing * Abstract [=E2=80=A6] * Introduction [=E2=80=A6] [cite/text:@beall-2019] explains [=E2=80=A6] #+begin_src bibtex :tangle ~/bib/beall-2019.bib [=E2=80=A6] #+end_src [=E2=80=A6 10 more BibTeX blocks used for the literature review] * Methods [=E2=80=A6] * Results [=E2=80=A6] #+begin_src sqlite :db ~/tmp/test.db :exports none [=E2=80=A6] #+end_src [=E2=80=A6 10 more SQLite blocks used to compute the results =E2=80=A6] [=E2=80=A6] Rudy --=20 "'Contrariwise,' continued Tweedledee, 'if it was so, it might be; and if it were so, it would be; but as it isn't, it ain't. That's logic.'" -- Lewis Carroll, Through the Looking Glass Rudolf Adamkovi=C4=8D [he/him] Studenohorsk=C3=A1 25 84103 Bratislava Slovakia