From: Rainer M Krug <Rainer@krugs.de>
To: Andreas Leha <andreas.leha@med.uni-goettingen.de>
Cc: emacs-orgmode@gnu.org
Subject: Re: BUG variable expansion with table
Date: Fri, 27 Jun 2014 11:48:53 +0200 [thread overview]
Message-ID: <m2ionmisxm.fsf@krugs.de> (raw)
In-Reply-To: <olu61jnqmm0.fsf@med.uni-goettingen.de> (Andreas Leha's message of "Fri, 27 Jun 2014 00:25:59 +0100")
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Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
> Hi Rainer,
>
> Rainer M Krug <Rainer@krugs.de> writes:
>
>> Hi
>>
>> there seems to be a bug in the table transfer. The org file below
>> evaluates as shown, i.e. the TABLE_BLOCK contains one column less then
>> it should as the first column is discarded and the second one used as
>> the row names. This only occurs when there is a second variable
>> defined. When the second variable is not passed, the code works (see
>> second example below).
>>
>> I did not get far when debugging, only that in the function
>> org-babel-R-assign-elisp when assigning TABLE_FILE the rownames are
>> missing in the =value=.
>>
>> Rainer
>>
>> First example:
>>
>> #+PROPERTY: rownames yes
>> #+PROPERTY: colnames yes
>>
>> #+NAME: TABLE
>> | | name | description |
>> |----------+--------------+--------------------|
>> | annee | year | Year of simulation |
>> | id | ipoints_Qdiv | Point Number |
>> | iespece | species | species number |
>> | scenario | scenario | Type of forest |
>> #+PROPERTY: var TABLE_FILE=TABLE
>> #+PROPERTY: var+ float=123.45
>>
>> * Data Assessment Results
>> #+HEADERS: :var TABLE_BLOCK=TABLE
>> #+HEADERS: :rownames yes
>> #+HEADERS: :colnames yes
>> #+begin_src R :results output wrap
>> TABLE_FILE
>> TABLE_BLOCK
>> #+end_src
>>
>> #+RESULTS:
>> :RESULTS:
>> name description
>> annee year Year of simulation
>> id ipoints_Qdiv Point Number
>> iespece species species number
>> scenario scenario Type of forest
>> Year.of.simulation
>> ipoints_Qdiv Point Number
>> species species number
>> scenario Type of forest
>> :END:
>>
>>
>> Second example:
>>
>> #+PROPERTY: rownames yes
>> #+PROPERTY: colnames yes
>>
>> #+NAME: TABLE
>> | | name | description |
>> |----------+--------------+--------------------|
>> | annee | year | Year of simulation |
>> | id | ipoints_Qdiv | Point Number |
>> | iespece | species | species number |
>> | scenario | scenario | Type of forest |
>> #+PROPERTY: var TABLE_FILE=TABLE
>> #+ PROPERTY: var+ float=123.45
>>
>> * Data Assessment Results
>> #+HEADERS: :var TABLE_BLOCK=TABLE
>> #+HEADERS: :rownames yes
>> #+HEADERS: :colnames yes
>> #+begin_src R :results output wrap
>> TABLE_FILE
>> TABLE_BLOCK
>> #+end_src
>>
>> #+RESULTS:
>> :RESULTS:
>> name description
>> annee year Year of simulation
>> id ipoints_Qdiv Point Number
>> iespece species species number
>> scenario scenario Type of forest
>> name description
>> annee year Year of simulation
>> id ipoints_Qdiv Point Number
>> iespece species species number
>> scenario scenario Type of forest
>> :END:
>
>
> FWIW, I think that bug was reported some while back [fn:1] --
> unfortunately without a fix .... ;-)
Pity - I will work around it then.
Thanks,
Rainer
>
> - Andreas
>
>
>
> Footnotes:
>
> [fn:1] http://article.gmane.org/gmane.emacs.orgmode/82295/match=
>
>
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
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next prev parent reply other threads:[~2014-06-27 9:49 UTC|newest]
Thread overview: 4+ messages / expand[flat|nested] mbox.gz Atom feed top
2014-06-25 19:55 Rainer M Krug
2014-06-26 23:25 ` Andreas Leha
2014-06-27 9:48 ` Rainer M Krug [this message]
2014-07-28 15:46 ` Bastien
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