From: Rainer M Krug <Rainer@krugs.de>
To: emacs-orgmode@gnu.org
Subject: Tangling takes long - profiling and calling R
Date: Mon, 15 Jun 2015 10:39:13 +0200 [thread overview]
Message-ID: <m2a8w12wni.fsf@krugs.de> (raw)
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Hi
I have a relatively large file with
about 200 =source blocks (R) to be tangled to get an R package. But the
tangling takes about 20 seconds.
Profiling the tangling showed that the call to ~mapcar~ in
~org-babel-params-from-properties~ takes about 40% of the execution time
(see profiler excerpt below). Is there anything one can do to make this
faster?
In addition to this, I observed there is some interaction with ESS when
tangling, which in my understanding is not necessary. I get messages
like
,----
| ...
| Wrote /Users/rainerkrug/Documents/Projects/EnergyBalance/.Rbuildignore
| Wrote /Users/rainerkrug/Documents/Projects/EnergyBalance/tests/wpLELTest.R
| You are developing: (EnergyBalance)
| Wrote /Users/rainerkrug/Documents/Projects/EnergyBalance/R/plotwpLELFitListParDistr.R
| You are developing: (EnergyBalance)
| ...
`----
where the messages "You are developing: (EnergyBalance)" come from
ESS. Is this to be expected that R is called for some blocks, but not
for others, when tangling?
Version info:
,----
| Org-mode version 8.3beta (release_8.3beta-1209-gc532ff @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)
| GNU Emacs 24.5.1 (x86_64-apple-darwin14.3.0, Carbon Version 157 AppKit 1347.57) of 2015-04-13 on Rainers-MacBook-Pro.local
`----
Cheers,
Rainer
,----
| - time-execute 4950 84%
| - call-interactively 4950 84%
| - org-babel-tangle 4828 82%
| - org-babel-tangle-collect-blocks 2728 46%
| - org-babel-tangle-single-block 1363 23%
| - org-babel-get-src-block-info 1304 22%
| - org-babel-parse-src-block-match 1210 20%
|### - org-babel-params-from-properties 1193 20%
| + mapcar 1144 19%
| + org-entry-get 33 0%
| + org-babel-parse-header-arguments 12 0%
| + org-babel-combine-header-arg-lists 4 0%
| + org-babel-parse-header-arguments 3 0%
| + apply 2 0%
| generate-new-buffer 1 0%
| + org-unescape-code-in-string 1 0%
| byte-code 1 0%
| + org-babel-generate-file-param 86 1%
| + org-babel-process-params 2 0%
| org-babel-where-is-src-block-head 1 0%
| + org-store-link 36 0%
| line-number-at-pos 17 0%
| + byte-code 2 0%
| generate-new-buffer 1 0%
| - org-babel-get-src-block-info 1334 22%
| - org-babel-parse-src-block-match 1235 21%
|#### - org-babel-params-from-properties 1212 20%
| + mapcar 1163 19%
| + org-entry-get 30 0%
| + org-babel-parse-header-arguments 12 0%
| + org-babel-combine-header-arg-lists 7 0%
| + org-babel-parse-header-arguments 7 0%
| + apply 4 0%
| + org-unescape-code-in-string 2 0%
| generate-new-buffer 1 0%
| + org-babel-generate-file-param 89 1%
| org-babel-where-is-src-block-head 2 0%
| + org-in-commented-heading-p 8 0%
| + org-babel-active-location-p 4 0%
| + byte-code 2 0%
| + mapc 2098 35%
| + run-hooks 1 0%
| + smex 122 2%
| + ... 912 15%
| + flyspell-post-command-hook 4 0%
| + redisplay_internal (C function) 3 0%
| + timer-event-handler 3 0%
`----
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
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next reply other threads:[~2015-06-15 8:39 UTC|newest]
Thread overview: 31+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-06-15 8:39 Rainer M Krug [this message]
2015-06-15 8:42 ` Tangling takes long - profiling and calling R Rainer M Krug
2015-06-15 18:52 ` Charles C. Berry
2015-06-16 10:29 ` Rainer M Krug
2015-06-15 19:49 ` Nicolas Goaziou
2015-06-16 10:34 ` Rainer M Krug
2015-06-16 11:46 ` Nicolas Goaziou
2015-06-16 12:45 ` Sebastien Vauban
2015-06-16 13:04 ` Nicolas Goaziou
2015-06-16 14:47 ` Rainer M Krug
2015-07-01 14:03 ` Aaron Ecay
2015-07-02 11:51 ` Nicolas Goaziou
2015-07-02 12:52 ` Rainer M Krug
2015-07-02 16:35 ` Aaron Ecay
2015-07-02 18:21 ` Sebastien Vauban
2015-07-02 18:44 ` Rainer M Krug
2015-07-02 18:43 ` Rainer M Krug
2015-07-02 16:11 ` Aaron Ecay
2015-07-03 13:43 ` Nicolas Goaziou
2015-07-02 18:51 ` Rainer M Krug
2015-06-16 14:42 ` Rainer M Krug
2015-06-16 21:45 ` Nicolas Goaziou
2015-06-17 7:16 ` org version numbers in file - WAS: " Rainer M Krug
2015-06-18 8:13 ` Nicolas Goaziou
2015-06-18 13:25 ` Rainer M Krug
2015-06-18 13:50 ` Nicolas Goaziou
2015-06-23 9:04 ` Rainer M Krug
2015-06-18 14:23 ` Detlef Steuer
2015-06-23 8:45 ` Rainer M Krug
2015-06-23 9:32 ` Detlef Steuer
2015-06-23 10:57 ` Rainer M Krug
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