From: Rainer M Krug <Rainer@krugs.de>
To: John Kitchin <jkitchin@andrew.cmu.edu>
Cc: emacs-orgmode@gnu.org
Subject: Re: Org and Citations / References / Bibliography
Date: Fri, 06 Nov 2015 10:42:39 +0100 [thread overview]
Message-ID: <m2a8qr31m8.fsf@krugs.de> (raw)
In-Reply-To: <m28u6cwtfb.fsf@andrew.cmu.edu> (John Kitchin's message of "Thu, 05 Nov 2015 06:56:56 -0500")
[-- Attachment #1: Type: text/plain, Size: 4068 bytes --]
John Kitchin <jkitchin@andrew.cmu.edu> writes:
> Can you send me a minimal org and bib file you are using that doesn't
> work, and how you have it set up?
>
> Does helm-bibtex work for you?
>
> We use org-ref on a daily basis, so it should work.
It does now. I went through the setup process slowly again using the
README.org and the org-ref.org in
[[https://github.com/jkitchin/org-ref]] as guidelines and it worked.
But I could not install any of the "useful libraries", as none of them
seems to be on melpa et al?
Thanks a lot - and org-ref looks really great.
Cheers,
Rainer
P.S.:
Just for reference: I now have the following in my emacs.org file:
*** org-ref
See [[https://www.youtube.com/watch?v=JyvpSVl4_dg][org-ref video]] and [[https://github.com/jkitchin/jmax/blob/master/org-ref.org][org-rel github site]] for further details (John Kitchin)
#+begin_src emacs-lisp
(use-package ebib
:ensure t
)
(use-package dash
:ensure t
)
(use-package s
:ensure t
)
(use-package f
:ensure t
)
(use-package hydra
:ensure t
)
(use-package org-ref
:ensure f
:load-path "~/.emacs.d/org-ref"
:config
;; README.org in org-ref repo for the why
(setq reftex-default-bibliography '("~/Documents/Mendeley/bibliography.bib"))
;;
;; see org-ref for use of these variables
(setq org-ref-bibliography-notes "~/Documents/Mendeley/notes.org"
org-ref-default-bibliography '("~/Documents/Mendeley/bibliography.bib")
org-ref-pdf-directory "~/iCloud/Mendeley/")
;;
(setq helm-bibtex-bibliography "~/.emacs.d/org-ref/test.bib")
(setq helm-bibtex-library-path "~/Dropbox/bibliography/bibtex-pdfs")
;;
;; open pdf with system pdf viewer (works on mac)
(setq helm-bibtex-pdf-open-function
(lambda (fpath)
(start-process "open" "*open*" "open" fpath)))
;; :bind
;; You may want to set some convenient keys for working in your bibtex file:
;; ("f10" . org-ref-open-bibtex-notes)
;; ("f11" . org-ref-open-bibtex-pdf)
;; ("f12" . org-ref-open-in-browser)
)
;; optional but very useful libraries in org-ref
(use-package doi-utils
:disabled t
:ensure t
)
(use-package jmax-bibtex
:disabled t
:ensure t
)
(use-package pubmed
:disabled t
:ensure t
)
(use-package arxiv
:disabled t
:ensure t
)
(use-package sci-id
:disabled t
:ensure t
)
#+end_src
>
> Rainer M Krug writes:
>
>> Hi
>>
>> I have been following the whole discussion about the implementation of a
>> good citation system in org, which is really necessary.
>>
>> At the moment I am again at that point where I would like to include
>> citations in a document and I don't get any citation system to work -
>> neither org-ref[1] nor org's org-reftex-citation nor reftex
>> citation. None of these find anything in a .bib file, I have no overview
>> where I have to specify the bib file and I am frustrated, because it
>> worked some months ago.
>>
>> I would very much like to use org-ref, but I don't even get the supplied
>> examples to work, i.e. find something from the .bib file.
>>
>> Any suggestions what I can do, any simple / minimalistic init.el file
>> which I can merge into my config?
>>
>> Thanks,
>>
>> Rainer
>>
>>
>> Footnotes:
>> [1] http://kitchingroup.cheme.cmu.edu/blog/2014/05/13/Using-org-ref-for-citations-and-references/
>
> --
> Professor John Kitchin
> Doherty Hall A207F
> Department of Chemical Engineering
> Carnegie Mellon University
> Pittsburgh, PA 15213
> 412-268-7803
> @johnkitchin
> http://kitchingroup.cheme.cmu.edu
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: Rainer@krugs.de
Skype: RMkrug
PGP: 0x0F52F982
[-- Attachment #2: signature.asc --]
[-- Type: application/pgp-signature, Size: 454 bytes --]
next prev parent reply other threads:[~2015-11-06 9:42 UTC|newest]
Thread overview: 7+ messages / expand[flat|nested] mbox.gz Atom feed top
2015-11-05 11:12 Org and Citations / References / Bibliography Rainer M Krug
2015-11-05 11:56 ` John Kitchin
2015-11-06 9:42 ` Rainer M Krug [this message]
2015-11-06 11:48 ` John Kitchin
2015-11-06 12:12 ` Rainer M Krug
2015-11-15 14:11 ` Grant Rettke
2015-11-16 8:44 ` Rainer M Krug
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=m2a8qr31m8.fsf@krugs.de \
--to=rainer@krugs.de \
--cc=emacs-orgmode@gnu.org \
--cc=jkitchin@andrew.cmu.edu \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).