From mboxrd@z Thu Jan 1 00:00:00 1970 From: tsd@tsdye.com (Thomas S. Dye) Subject: Re: Implementing Reproducible Research Date: Sun, 01 Jun 2014 10:33:40 -1000 Message-ID: References: Mime-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:39009) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1WrCS8-00055v-MV for emacs-orgmode@gnu.org; Sun, 01 Jun 2014 16:34:06 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1WrCS3-0005fa-9z for emacs-orgmode@gnu.org; Sun, 01 Jun 2014 16:34:00 -0400 Received: from gproxy5-pub.mail.unifiedlayer.com ([67.222.38.55]:36206) by eggs.gnu.org with smtp (Exim 4.71) (envelope-from ) id 1WrCS3-0005fU-1t for emacs-orgmode@gnu.org; Sun, 01 Jun 2014 16:33:55 -0400 In-Reply-To: (Christophe Pouzat's message of "Thu, 29 May 2014 15:54:35 +0200") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Christophe Pouzat Cc: emacs-orgmode@gnu.org Aloha Christophe, Chapter 8, Reproducible Research for Large-Scale Data Analysis, by Holger Hoefling and Anthony Rossini uses Org mode for literate programming and for reproducible research. The article focuses on the challenges faced by a large-scale data analysis, where the full R code base might run hours or days to produce a final result. The working solution involves a program, makepp, that implements make based on hash codes of files, rather than timestamps, which change with every tangling. Org mode was clearly central to the work. It is favorably compared to the tools sweave and knitr familiar to R programmers. Thanks for pointing this out. All the best, Tom Christophe Pouzat writes: > Hi All, > > The book "Implementing Reproducible Research" edited by V. Stodden, F. > Leisch and R. D. Peng came out last month (I don't have a copy) and I just > found out that you can get the chapters (in PDF) from the editors' site: > https://osf.io/s9tya/ > I did not have enough time to go trhough all of it but org is mentioned a > couple of times! > > Christophe > > --=20 > A Master Carpenter has many tools and is expert with most of them. If you > only know how to use a hammer, every problem starts to look like a nail. > Stay away from that trap. > > Richard B Johnson. > > -- > > Christophe Pouzat > MAP5 - Math=C3=A9matiques Appliqu=C3=A9es =C3=A0 Paris 5 > CNRS UMR 8145 > 45, rue des Saints-P=C3=A8res > 75006 PARIS > France > > tel: +33142863828 > mobile: +33662941034 > web: http://xtof.disque.math.cnrs.fr > Hi All, > > The book "Implementing Reproducible Research" edited by V. Stodden, F. > Leisch and R. D. Peng came out last month (I don't have a copy) and I > just found out that you can get the chapters (in PDF) from the > editors' site: https://osf.io/s9tya/ > I did not have enough time to go trhough all of it but org is > mentioned a couple of times! > > Christophe --=20 Thomas S. Dye http://www.tsdye.com