From: tsd@tsdye.com (Thomas S. Dye)
To: Riccardo Romoli <ric.romoli@gmail.com>
Cc: emacs-orgmode@gnu.org
Subject: Re: Generating plot with org-babel-R
Date: Sun, 05 Feb 2012 06:45:36 -1000 [thread overview]
Message-ID: <m1ty35z0sv.fsf@tsdye.com> (raw)
In-Reply-To: <CAHiM-bOmSZn1m+qT3_12COQ6ezw2qSgU0uSDFGpvkGV3qeDQnA@mail.gmail.com> (Riccardo Romoli's message of "Sun, 5 Feb 2012 12:08:48 +0100")
Hi Riccardo,
Thanks for the URL. Org mode has evolved since this article was
written. It should probably be revised or taken off Worg. I've copied
Eric Schulte, who is better able than me to determine the correct course
of action here.
In the meantime, an up-to-date description of how Org mode can be used
to write literate programs has appeared in the Journal of Statistical
Software. You can find it here: http://www.jstatsoft.org/v46/i03
Perhaps you could use the examples in the JSS article to get started?
If these don't work for you, or if they raise questions that are difficult
to answer, please do come back to the list with your queries.
All the best,
Tom
Riccardo Romoli <ric.romoli@gmail.com> writes:
> Hi, this is the URL:
>
> http://orgmode.org/worg/org-contrib/babel/how-to-use-Org-Babel-for-R.html
>
> Best
> R
>
> 2012/2/5 Thomas S. Dye <tsd@tsdye.com>
>
>> Hi Riccardo,
>>
>> This code appears to be outdated. I don't recall this code on the org
>> site. Could you send a URL?
>>
>> All the best,
>> Tom
>>
>> Riccardo Romoli <ric.romoli@gmail.com> writes:
>>
>> > Hi, I'm trying to generate some figure with R, into an org session.
>> Firstly
>> > I use the code in the org site. The problem is that the code do not
>> > generate any figure.
>> >
>> > This is the code:
>> >
>> > #+TITLE:Test
>> > #+AUTHOR: Your Name
>> > #+EMAIL: your-email@server.com
>> > #+BABEL: :session *R* :cache yes :results output graphics :exports
>> > both :tangle yes
>> >
>> > * Example of Org-Babel for R Literate Programming
>> > ** R text output
>> > A simple summary.
>> > #+begin_src R
>> > x <- rnorm(10)
>> > summary(x)
>> > #+end_src
>> >
>> > ** R graphics output
>> > Note we use the object =x= generated in previous code block, thanks to
>> > the header option =:session *R*=. The output graphics file is
>> > =a.png=.
>> >
>> > #+begin_src R :file a.png
>> > y <- rnorm(10)
>> > plot(x, y)
>> > #+end_src
>> >
>> > Same plot with larger dimension:
>> >
>> > #+begin_src R :file b.png :width 800 :height 800
>> > plot(x, y)
>> > #+end_src
>> >
>> >
>> > Where do I wrong?
>> >
>> > Best
>> > Riccardo
>> > Hi, I'm trying to generate some figure with R, into an org session.
>> Firstly I use the code in the org site. The problem is that the code do not
>> generate any figure. This is the code:
>> > #+TITLE:Test
>> > #+AUTHOR: Your Name
>> > #+EMAIL: mailto:your-email@server.com
>> > #+BABEL: :session *R* :cache yes :results output graphics :exports both
>> :tangle yes
>> >
>> > * Example of Org-Babel for R Literate Programming
>> > ** R text output
>> > A simple summary.
>> > #+begin_src R
>> > x <- rnorm(10)
>> > summary(x)
>> > #+end_src
>> >
>> > ** R graphics output
>> > Note we use the object =x= generated in previous code block, thanks to
>> > the header option =:session *R*=. The output graphics file is
>> > =a.png=.
>> >
>> > #+begin_src R :file a.png
>> > y <- rnorm(10)
>> > plot(x, y)
>> > #+end_src
>> >
>> > Same plot with larger dimension:
>> >
>> > #+begin_src R :file b.png :width 800 :height 800
>> > plot(x, y)
>> > #+end_src
>> > Where do I wrong?BestRiccardo
>>
>> --
>> Thomas S. Dye
>> http://www.tsdye.com
>>
> Hi, this is the URL:http://orgmode.org/worg/org-contrib/babel/how-to-use-Org-Babel-for-R.htmlBestR
> 2012/2/5 Thomas S. Dye <span dir="ltr"><mailto:tsd@tsdye.com></span>Hi Riccardo,
>
>
> This code appears to be outdated. I don't recall this code on the org
> site. Could you send a URL?
>
> All the best,
> Tom
>
> Riccardo Romoli <mailto:ric.romoli@gmail.com> writes:
>
>> Hi, I'm trying to generate some figure with R, into an org session. Firstly
>> I use the code in the org site. The problem is that the code do not
>> generate any figure.
>>
>> This is the code:
>>
>> #+TITLE:Test
>> #+AUTHOR: Your Name
>> #+EMAIL: mailto:your-email@server.com
>> #+BABEL: :session *R* :cache yes :results output graphics :exports
>> both :tangle yes
>>
>> * Example of Org-Babel for R Literate Programming
>> ** R text output
>> A simple summary.
>> #+begin_src R
>> x <- rnorm(10)
>> summary(x)
>> #+end_src
>>
>> ** R graphics output
>> Note we use the object =x= generated in previous code block, thanks to
>> the header option =:session *R*=. The output graphics file is
>> =a.png=.
>>
>> #+begin_src R :file a.png
>> y <- rnorm(10)
>> plot(x, y)
>> #+end_src
>>
>> Same plot with larger dimension:
>>
>> #+begin_src R :file b.png :width 800 :height 800
>> plot(x, y)
>> #+end_src
>>
>>
>> Where do I wrong?
>>
>> Best
>> Riccardo
>> Hi, I'm trying to generate some figure with R, into an org session. Firstly I use the code in the org site. The problem is that the code do not generate any figure. This is the code:
>> #+TITLE:Test
>> #+AUTHOR: Your Name
>> #+EMAIL: mailto:mailto:your-email@server.com
>> #+BABEL: :session *R* :cache yes :results output graphics :exports both :tangle yes
>>
>> * Example of Org-Babel for R Literate Programming
>> ** R text output
>> A simple summary.
>> #+begin_src R
>> x <- rnorm(10)
>> summary(x)
>> #+end_src
>>
>> ** R graphics output
>> Note we use the object =x= generated in previous code block, thanks to
>> the header option =:session *R*=. The output graphics file is
>> =a.png=.
>>
>> #+begin_src R :file a.png
>> y <- rnorm(10)
>> plot(x, y)
>> #+end_src
>>
>> Same plot with larger dimension:
>>
>> #+begin_src R :file b.png :width 800 :height 800
>> plot(x, y)
>> #+end_src
>> Where do I wrong?BestRiccardo
>
> <span class="HOEnZb">--
> Thomas S. Dye
> http://www.tsdye.com
> </span>
--
Thomas S. Dye
http://www.tsdye.com
next prev parent reply other threads:[~2012-02-05 16:45 UTC|newest]
Thread overview: 17+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-02-04 22:52 Generating plot with org-babel-R Riccardo Romoli
2012-02-04 23:37 ` Thomas S. Dye
2012-02-05 11:08 ` Riccardo Romoli
2012-02-05 16:45 ` Thomas S. Dye [this message]
2012-02-05 19:29 ` Updating the Babel section of Worg Was: " Eric Schulte
2012-02-06 5:43 ` Thomas S. Dye
2012-02-06 21:20 ` Updating the Babel section of Worg Eric Schulte
2012-02-08 0:01 ` Thomas S. Dye
2012-02-08 1:04 ` Martyn Jago
2012-02-08 14:21 ` Eric Schulte
2012-02-08 14:44 ` Rainer M Krug
2012-02-08 15:27 ` Eric Schulte
2012-02-08 14:14 ` Eric Schulte
2012-02-09 17:20 ` Thomas S. Dye
2012-02-18 21:53 ` Eric Schulte
2012-02-08 15:41 ` John Hendy
2012-02-06 21:12 ` Generating plot with org-babel-R Riccardo Romoli
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