From mboxrd@z Thu Jan 1 00:00:00 1970 From: Aric Subject: Export tikz Figures Issue Date: Sat, 11 Jan 2014 03:58:18 +0000 (UTC) Message-ID: Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Transfer-Encoding: 7bit Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:45468) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1W1pir-0002dm-P6 for emacs-orgmode@gnu.org; Fri, 10 Jan 2014 22:59:05 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1W1pik-0002o6-DU for emacs-orgmode@gnu.org; Fri, 10 Jan 2014 22:58:57 -0500 Received: from plane.gmane.org ([80.91.229.3]:44314) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1W1pik-0002nu-6Q for emacs-orgmode@gnu.org; Fri, 10 Jan 2014 22:58:50 -0500 Received: from list by plane.gmane.org with local (Exim 4.69) (envelope-from ) id 1W1pic-0005cA-Im for emacs-orgmode@gnu.org; Sat, 11 Jan 2014 04:58:47 +0100 Received: from 149.142.83.92 ([149.142.83.92]) by main.gmane.org with esmtp (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Sat, 11 Jan 2014 04:58:42 +0100 Received: from aorchid by 149.142.83.92 with local (Gmexim 0.1 (Debian)) id 1AlnuQ-0007hv-00 for ; Sat, 11 Jan 2014 04:58:42 +0100 List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode@gnu.org I apologize for the sudden flurry of postings, but I am finding some great solutions within Org. I have very happily managed to find the more recent references to babel latex and tikz figures with the imagemagick conversion, and this works absolutely beautifully within the Org mode buffer. I have not been successful in exporting the image (html or odt) however. I can export it if I create a link to the generated png image, rather than leaving it to the results section like I can with latex. Here is an example: Working R: #+name: fig:bplotil8staph #+headers: :results graphics :file /somewhereelse/bplotil8staph.png #+begin_src R bwplot(il.8 ~ impression,....) #+end_src #+CAPTION: Plot demonstrating significantly increased IL-8 levels during /S. aureus/ pneumonia as compared to colonization. #+RESULTS: bplotil8staph [[file:/somewhereelse/bplotil8staph.png]] Note that this link is generated by the R output and I can see the image along with the caption in both Org buffer and exported files. Not working so well LaTeX: #+name: fig:markovdesc #+headers: :imagemagick yes :iminoptions -density 600 :imoutoptions - geometry 800 #+headers: :file /somewhereelse/plot_markovModel.png :fit yes #+begin_src latex :buffer no :packages '(("" "tikz")) \usetikzlibrary{shadows,arrows,automata,decorations.text,shapes,snakes,fit} \tikzstyle{ball} = [circle,shading=ball,minimum size=1cm] \begin{tikzpicture}[->,>=stealth',shorten >=1pt,auto,node distance=4.2cm] \tikzstyle{everystate}=[draw=black,thick,scale=1,align=center] \node [state,initial,text width=4em,align=center,ball,text=black,ball color=green!70!black,drop shadow] (A) {{\small Post- Transplant State 1}}; \node [state,align=center,text width=4em,ball,text=black,ball color=purple!70,drop shadow] (B) [right of=A] {{\small BOS ~~~State 2}}; \path (A) edge [bend left] node[above] {{\small $\lambda_{12}(t)$ Covariates~$HR_{12}$}} (B); \node[state,align=center,text width=4em,ball,text=black,ball color=blue!50,drop shadow] (C) [below=2.6cm,right=1cm] {{\small Death ~~~State 3}}; \path (A) edge [] node[left] {{\small $\lambda_{13}(t)$ Covariates~$HR_{13}$}} (C); \path (B) edge [] node[right] {{\small $\lambda_{23}(t)$ Covariates~$HR_{23}$}} (C); \end{tikzpicture} #+end_src #+CAPTION: Basic idea of the model demonstrating the transition states. #+RESULTS: fig:markovdesc #+BEGIN_LaTeX [[file:/fitz/Rworkarea/gnr/new_work/staph/plot_markovModel.png]] #+END_LaTeX For the LaTeX there is no image in the exported buffers and the in-text link to the image is not active at all. Things only work for latex tikz in the Org buffer. What am I doing wrong? Or do I need to create a manual link to the file? Thanks so much for suggestions. aric