* Using :results output org with new exporter exporting as verbatim with LaTeX
@ 2013-03-22 23:05 John Hendy
2013-03-23 22:12 ` Eric Schulte
0 siblings, 1 reply; 5+ messages in thread
From: John Hendy @ 2013-03-22 23:05 UTC (permalink / raw)
To: emacs-orgmode
I have an org file with R src block that spits out some file names to
embed. I don't think I need to reproduce the block for testing
purposes, but the gist is that I use cat() to spit out some
=#+begin_center= and =[[filename]]= stuff.
R code block header:
#+name: src-block-name
#+begin_src R :session r :exports results :results output org
I'm getting a results block like so:
#+RESULTS: src-block-name
#+BEGIN_SRC org
[[./plots/filename1.pdf]]
[[./plots/filename2.pdf]]
[[./plots/filename3.pdf]]
#+END_SRC
I used this setup previously (and successfully) as described in this
mailing list thread. That particular post described my near successful
block, with the same sort of cat(paste()) commands I was using to
output the filenames in [[filename.pdf]] orgmode syntax. The final
success happened at the very end when Eric Schulte suggested I change
from :results output raw to :results output org.
- http://lists.gnu.org/archive/html/emacs-orgmode/2012-08/msg01222.html
Hence, I started with :results output org this time, but it didn't
work. It's being exported verbatim using =C-c C-e l p=. (Appears in
\begin{verbatim} ... \end{verbatim} in the output .tex file)
If I change to :results output raw, I simply get:
#+results
[[filename.pdf]]
This exports correctly.
If I change the :results output org #+results block to the following,
it also works correctly:
#+begin_org
[[filename.pdf]]
#+end_org
From the ob-doc-R, it appears that orgmode export might be expecting
#+begin_org, not #+begin_src org:
- http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html
#+begin_quote
The Org Mode source code block specifies :results org so the output is
wrapped in #+BEGIN_ORG … #+END_ORG. This way, arbitrary output can be
included and easily replaced on subsequent evaluations of the source
code block.
#+end_quote
Let me know the current proper way to accomplish what I'm trying to do.
Thanks,
John
^ permalink raw reply [flat|nested] 5+ messages in thread* Re: Using :results output org with new exporter exporting as verbatim with LaTeX 2013-03-22 23:05 Using :results output org with new exporter exporting as verbatim with LaTeX John Hendy @ 2013-03-23 22:12 ` Eric Schulte 2013-03-24 1:40 ` John Hendy 0 siblings, 1 reply; 5+ messages in thread From: Eric Schulte @ 2013-03-23 22:12 UTC (permalink / raw) To: John Hendy; +Cc: emacs-orgmode John Hendy <jw.hendy@gmail.com> writes: > I have an org file with R src block that spits out some file names to > embed. I don't think I need to reproduce the block for testing > purposes, but the gist is that I use cat() to spit out some > =#+begin_center= and =[[filename]]= stuff. > > R code block header: > > #+name: src-block-name > #+begin_src R :session r :exports results :results output org > > > I'm getting a results block like so: > > #+RESULTS: src-block-name > #+BEGIN_SRC org > > [[./plots/filename1.pdf]] > > [[./plots/filename2.pdf]] > > [[./plots/filename3.pdf]] > > #+END_SRC > > I used this setup previously (and successfully) as described in this > mailing list thread. That particular post described my near successful > block, with the same sort of cat(paste()) commands I was using to > output the filenames in [[filename.pdf]] orgmode syntax. The final > success happened at the very end when Eric Schulte suggested I change > from :results output raw to :results output org. > - http://lists.gnu.org/archive/html/emacs-orgmode/2012-08/msg01222.html > > Hence, I started with :results output org this time, but it didn't > work. It's being exported verbatim using =C-c C-e l p=. (Appears in > \begin{verbatim} ... \end{verbatim} in the output .tex file) > > If I change to :results output raw, I simply get: > > #+results > > [[filename.pdf]] > > This exports correctly. > > If I change the :results output org #+results block to the following, > it also works correctly: > > #+begin_org > > [[filename.pdf]] > > #+end_org > > From the ob-doc-R, it appears that orgmode export might be expecting > #+begin_org, not #+begin_src org: > - http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html > > #+begin_quote > The Org Mode source code block specifies :results org so the output is > wrapped in #+BEGIN_ORG & #+END_ORG. This way, arbitrary output can be > included and easily replaced on subsequent evaluations of the source > code block. > #+end_quote > > > Let me know the current proper way to accomplish what I'm trying to do. > > > > Thanks, > John > Hi John, There has been some churn in results handling in the last year, in part this is related to the new exporter. I think the following is the current best approach. #+begin_src sh :results output wrap cat <<EOF [[./plots/filename1.pdf]] [[./plots/filename2.pdf]] [[./plots/filename3.pdf]] EOF #+end_src #+RESULTS: :RESULTS: [[./plots/filename1.pdf]] [[./plots/filename2.pdf]] [[./plots/filename3.pdf]] :END: I do feel bad that we had to add yet another results type (i.e. "wrap"), but as I recall there were very good reasons for this decision and it has made things cleaner on the implementation side. Cheers, -- Eric Schulte http://cs.unm.edu/~eschulte ^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Using :results output org with new exporter exporting as verbatim with LaTeX 2013-03-23 22:12 ` Eric Schulte @ 2013-03-24 1:40 ` John Hendy 2013-03-24 16:00 ` Charles Berry 0 siblings, 1 reply; 5+ messages in thread From: John Hendy @ 2013-03-24 1:40 UTC (permalink / raw) To: Eric Schulte; +Cc: emacs-orgmode On Sat, Mar 23, 2013 at 5:12 PM, Eric Schulte <schulte.eric@gmail.com> wrote: > John Hendy <jw.hendy@gmail.com> writes: > >> I have an org file with R src block that spits out some file names to >> embed. I don't think I need to reproduce the block for testing >> purposes, but the gist is that I use cat() to spit out some >> =#+begin_center= and =[[filename]]= stuff. >> >> R code block header: >> >> #+name: src-block-name >> #+begin_src R :session r :exports results :results output org >> >> >> I'm getting a results block like so: >> >> #+RESULTS: src-block-name >> #+BEGIN_SRC org >> >> [[./plots/filename1.pdf]] >> >> [[./plots/filename2.pdf]] >> >> [[./plots/filename3.pdf]] >> >> #+END_SRC >> >> I used this setup previously (and successfully) as described in this >> mailing list thread. That particular post described my near successful >> block, with the same sort of cat(paste()) commands I was using to >> output the filenames in [[filename.pdf]] orgmode syntax. The final >> success happened at the very end when Eric Schulte suggested I change >> from :results output raw to :results output org. >> - http://lists.gnu.org/archive/html/emacs-orgmode/2012-08/msg01222.html >> >> Hence, I started with :results output org this time, but it didn't >> work. It's being exported verbatim using =C-c C-e l p=. (Appears in >> \begin{verbatim} ... \end{verbatim} in the output .tex file) >> >> If I change to :results output raw, I simply get: >> >> #+results >> >> [[filename.pdf]] >> >> This exports correctly. >> >> If I change the :results output org #+results block to the following, >> it also works correctly: >> >> #+begin_org >> >> [[filename.pdf]] >> >> #+end_org >> >> From the ob-doc-R, it appears that orgmode export might be expecting >> #+begin_org, not #+begin_src org: >> - http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html >> >> #+begin_quote >> The Org Mode source code block specifies :results org so the output is >> wrapped in #+BEGIN_ORG & #+END_ORG. This way, arbitrary output can be >> included and easily replaced on subsequent evaluations of the source >> code block. >> #+end_quote >> >> >> Let me know the current proper way to accomplish what I'm trying to do. >> >> >> >> Thanks, >> John >> > > Hi John, > > There has been some churn in results handling in the last year, in part > this is related to the new exporter. I think the following is the > current best approach. > > #+begin_src sh :results output wrap > cat <<EOF > [[./plots/filename1.pdf]] > > [[./plots/filename2.pdf]] > > [[./plots/filename3.pdf]] > EOF > #+end_src > > #+RESULTS: > :RESULTS: > [[./plots/filename1.pdf]] > > [[./plots/filename2.pdf]] > > [[./plots/filename3.pdf]] > :END: > > I do feel bad that we had to add yet another results type (i.e. "wrap"), > but as I recall there were very good reasons for this decision and it > has made things cleaner on the implementation side. I'm fine with whatever, though I think ob-R-doc is in need of a refresher, since I don't particularly think raw vs. org (and now wrap, which is non-existent in formal documentation from what I've seen) is explained extremely well. I'd be happy to help, but I don't understand the differences myself. For example, in our previous discussion (from the thread linked in my original post), it seems like raw was the /gist/ of what I wanted, but raw didn't know how to replace org-specific syntax [[filename]] properly, so I needed org. I also can't find any references to =output wrap=. Tried googling =output wrap R orgmode babel= and then ="output wrap" R orgmode babel= to try to find some discussions on this. Thanks for letting me know, John > > Cheers, > > -- > Eric Schulte > http://cs.unm.edu/~eschulte ^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Using :results output org with new exporter exporting as verbatim with LaTeX 2013-03-24 1:40 ` John Hendy @ 2013-03-24 16:00 ` Charles Berry 2013-03-24 17:14 ` John Hendy 0 siblings, 1 reply; 5+ messages in thread From: Charles Berry @ 2013-03-24 16:00 UTC (permalink / raw) To: emacs-orgmode John Hendy <jw.hendy <at> gmail.com> writes: [deleted] > wrap [...] is non-existent in formal documentation from what I've seen It is in the manual: 14.8.2.23 `:wrap' See http://orgmode.org/manual/wrap.html#wrap or from emacs: C-h i m org RET C-s wrap RET RET HTH, Chuck ^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: Using :results output org with new exporter exporting as verbatim with LaTeX 2013-03-24 16:00 ` Charles Berry @ 2013-03-24 17:14 ` John Hendy 0 siblings, 0 replies; 5+ messages in thread From: John Hendy @ 2013-03-24 17:14 UTC (permalink / raw) To: Charles Berry; +Cc: emacs-orgmode On Sun, Mar 24, 2013 at 11:00 AM, Charles Berry <ccberry@ucsd.edu> wrote: > John Hendy <jw.hendy <at> gmail.com> writes: > > [deleted] > >> wrap [...] is non-existent in formal documentation from what I've seen > > It is in the manual: > > 14.8.2.23 `:wrap' > > See > > http://orgmode.org/manual/wrap.html#wrap > > or from emacs: > > C-h i m org RET C-s wrap RET RET Ah. Forgive my denseness! I guess I'm just perplexed by what "level" these options fall in. The suggestion was to use =:results output wrap=, not :wrap (hence searching for that instead of just ":wrap". :wrap gets it's own high level documentation page while the other options used similarly (if =:results output wrap= is the right syntax) seem to be considred "sub options" of something else: - http://orgmode.org/manual/results.html#results (Also note that =wrap= doesn't appear on that list, even though it does work with :results output). On that note, is there a discernible difference in practice between: :wrap syntax: #+begin_results blah #+end_results and :results output wrap syntax: :results: blah :end: John > > HTH, > > Chuck > > ^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2013-03-24 17:15 UTC | newest] Thread overview: 5+ messages (download: mbox.gz / follow: Atom feed) -- links below jump to the message on this page -- 2013-03-22 23:05 Using :results output org with new exporter exporting as verbatim with LaTeX John Hendy 2013-03-23 22:12 ` Eric Schulte 2013-03-24 1:40 ` John Hendy 2013-03-24 16:00 ` Charles Berry 2013-03-24 17:14 ` John Hendy
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