From mboxrd@z Thu Jan 1 00:00:00 1970 Return-Path: Received: from mp1 ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by ms0.migadu.com with LMTPS id aFQrIkp/q2H9yAAAgWs5BA (envelope-from ) for ; Sat, 04 Dec 2021 15:46:34 +0100 Received: from aspmx1.migadu.com ([2001:41d0:2:bcc0::]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits)) by mp1 with LMTPS id qEWkHUp/q2H4AwAAbx9fmQ (envelope-from ) for ; Sat, 04 Dec 2021 14:46:34 +0000 Received: from lists.gnu.org (lists.gnu.org [209.51.188.17]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by aspmx1.migadu.com (Postfix) with ESMTPS id C9E0E35491 for ; Sat, 4 Dec 2021 15:46:33 +0100 (CET) Received: from localhost ([::1]:58626 helo=lists1p.gnu.org) by lists.gnu.org with esmtp (Exim 4.90_1) (envelope-from ) id 1mtWJ5-0007eR-2E for larch@yhetil.org; Sat, 04 Dec 2021 09:46:31 -0500 Received: from eggs.gnu.org ([209.51.188.92]:42570) by lists.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mtWIb-0007e3-Uz for emacs-orgmode@gnu.org; Sat, 04 Dec 2021 09:46:01 -0500 Received: from mail-4323.proton.ch ([185.70.43.23]:37505) by eggs.gnu.org with esmtps (TLS1.2:ECDHE_RSA_AES_256_GCM_SHA384:256) (Exim 4.90_1) (envelope-from ) id 1mtWIY-0003xD-GH for emacs-orgmode@gnu.org; Sat, 04 Dec 2021 09:46:01 -0500 Date: Sat, 04 Dec 2021 14:45:37 +0000 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=vidal-rosset.net; s=protonmail3; t=1638629152; bh=fG5JGLIV+hoexF85Y2sqGP+6vyrZeS72oxhoNLmbLNg=; h=Date:To:From:Cc:Reply-To:Subject:Message-ID:In-Reply-To: References:From:To:Cc; b=qAiewNBWYv/Eicr+xW5d32a6Z8GSuK3FgBCESyHDFhC0FWCdjwjjdLeMSbWpDblbq AVMP++sdh+uNklJqW+CiruLXIYqjY5/8wS4OmOMYDVdTSJW5/Eapxw3Y0Lu6pCwG2K ok+2jqqxIJu4LvyDcv5y/PZy8WCExil1sa8YTVtxKWSwAbNBvqeEVkfyoDoqaZKxw3 YDJisVIvxWIXYvvckI3Nq0tFqigdWDWEsX9e3veGCK2JpJEF8agK74hx1BjfyN6WA4 0ucl1HN+pK+sTwzKbY1+bH0SECl24kdWVwJvlEhaR/qLJqvKZUZeF+J2sLURYf8ao9 eWIgVt9ilqZjw== To: John Kitchin From: Joseph Vidal-Rosset Subject: Re: citeproc-org and org-ref 3 Message-ID: In-Reply-To: References: <56442351-6f41-3490-01f2-0ca5aa930c6a@vidal-rosset.net> <61af3132-888f-1200-2e52-dec66c26551b@vidal-rosset.net> <0d4028ea-8ed6-22f3-023b-20b2df18406c@vidal-rosset.net> <36116c7d-b329-22f7-6ac2-4e747b9abb49@vidal-rosset.net> MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Received-SPF: pass client-ip=185.70.43.23; envelope-from=joseph@vidal-rosset.net; helo=mail-4323.proton.ch X-Spam_score_int: -20 X-Spam_score: -2.1 X-Spam_bar: -- X-Spam_report: (-2.1 / 5.0 requ) BAYES_00=-1.9, DKIM_SIGNED=0.1, DKIM_VALID=-0.1, DKIM_VALID_AU=-0.1, DKIM_VALID_EF=-0.1, RCVD_IN_MSPIKE_H4=0.001, RCVD_IN_MSPIKE_WL=0.001, SPF_HELO_NONE=0.001, SPF_PASS=-0.001 autolearn=ham autolearn_force=no X-Spam_action: no action X-BeenThere: emacs-orgmode@gnu.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Reply-To: Joseph Vidal-Rosset Cc: org-mode-email , =?utf-8?Q?Andr=C3=A1s_Simonyi?= Errors-To: emacs-orgmode-bounces+larch=yhetil.org@gnu.org Sender: "Emacs-orgmode" X-Migadu-Flow: FLOW_IN X-Migadu-Country: US ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=yhetil.org; s=key1; t=1638629194; h=from:from:sender:sender:reply-to:reply-to:subject:subject:date:date: message-id:message-id:to:to:cc:cc:mime-version:mime-version: content-type:content-type: content-transfer-encoding:content-transfer-encoding: in-reply-to:in-reply-to:references:references:list-id:list-help: list-unsubscribe:list-subscribe:list-post:dkim-signature; bh=fG5JGLIV+hoexF85Y2sqGP+6vyrZeS72oxhoNLmbLNg=; b=Fv5/DcIaSzmfvYPGVxrUefQg9sE61fuEuDnE9Z8saddGi2RzPHChM9WWkX3kexSFe2nGE2 pD/fZvGwPotgdCMEUxxepJnnquZv4KDxaAosdiC/L4m44SRPK1oshddjHC5lLh5wl/3jgc nLl7lWey9iwcHFDWeoR/WUXb5d3nFcWJ3was+m1cpoWG0Jsq7XV1gwLDtXdIqnE6imj+w4 YPQpJyWkHgs6etSrZOm1qNyXTuVk0FmjwM4iuw936fkbREQaa5YcGUIynegbkBjUyGJDV3 np0CJda0CJ+W16byDiTxmkpMD1nQ/Uqy8RYMEBohLGV18eYv0utaEfyQ7YfPKQ== ARC-Seal: i=1; s=key1; d=yhetil.org; t=1638629194; a=rsa-sha256; cv=none; b=bspxa8KcP2OyMPdZMgz9JStScC27677GbWHXm3nLiFa8Xm/X3PRYTImVvXJbiu+qSh451B cy3Lf68tLUpRiV0aeX9QsBUhlS56xq87N/P1ljDZ+f1a+qiWoxk8nYh+cFrei056+eFb1l KOm35TRuGHUDVXTmBlz9lmUuu1UkTP1hvGU3wz9s7kKlPVCnW8uLMt08PZFe6c+Y55grqC P5VTZE/etblWzeFO/N9rQYC5XUXTfR9Ix66VXL3eGMy4ZOryASK46AU1ZfJMyn58gLy9rz J253CsogXHMFslY1KfGnrjEQT8fwHbGXLvo3hvoBPEaQqs42H9rwe9sHF/HPVA== ARC-Authentication-Results: i=1; aspmx1.migadu.com; dkim=pass header.d=vidal-rosset.net header.s=protonmail3 header.b=qAiewNBW; dmarc=pass (policy=none) header.from=vidal-rosset.net; spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-Migadu-Spam-Score: -3.83 Authentication-Results: aspmx1.migadu.com; dkim=pass header.d=vidal-rosset.net header.s=protonmail3 header.b=qAiewNBW; dmarc=pass (policy=none) header.from=vidal-rosset.net; spf=pass (aspmx1.migadu.com: domain of "emacs-orgmode-bounces+larch=yhetil.org@gnu.org" designates 209.51.188.17 as permitted sender) smtp.mailfrom="emacs-orgmode-bounces+larch=yhetil.org@gnu.org" X-Migadu-Queue-Id: C9E0E35491 X-Spam-Score: -3.83 X-Migadu-Scanner: scn0.migadu.com X-TUID: ea42pyOEAMg0 Dear John, Another more important point. It is now more probably a point where org-ref 3 needs to be improved: it seems to me that the format [numerical_reference, page] or (name_reference, page) cannot be produced for the html export. (The format [numerical_reference, page] was produced with org-ref2 + citeproc-org , see for example: https://www.vidal-rosset.net/a_logical_remark_on_swinburnes_cartesian_argum= ent_for_substance_dualism.html Swinburne=E2=80=99s argument is an amended version of Descartes=E2=80=99s i= n Discourse on the Method [1, p. 127]: ) I hope that there is a solution. Best wishes, Jo. Le 03/12/2021 =C3=A0 18:13, John Kitchin a =C3=A9crit=C2=A0: > I think this is caused by something in the style, or in how citeproc > uses the style. > > This document: > > #+csl-style: biochimica-et-biophysica-acta.csl > > See [[cite:&scalia-2020-evaluat-scalab]]. > > bibliography:~/Dropbox/emacs/bibliography/references.bib > > Leads to (as you have seen): > > image.png > > The html for that reference looks like: >
> =C2=A0
> =C2=A0 =C2=A0
[1]
class=3D"csl-right-inline">G. Scalia, C.A. Grambow, B. Pernici, Y.-P. Li, > W.H. Green, ">Evaluating Scalable > Uncertainty Estimation Methods for Deep Learning-Based Molecular > Property Prediction, Journal of Chemical Information and Modeling, > 60 (2020) 2697-2717.
> =C2=A0
>
> > > I don't see why there is an extra line there, I guess it is some CSS > styling. > > if you change the csl style to=C2=A0apa-numeric-superscript-brackets.csl > > you get > image.png > > which I think is closer to what you want. The html for this looks like > this, and does not have some of the div elements seen above. I guess > this is something in the style files themselves. > >
> =C2=A0
1. Sca= lia, G., > Grambow, C. A., Pernici, B., Li, Y.-P., & Green, W. H. (2020). > Evaluating Scalable Uncertainty Estimation Methods for Deep > Learning-Based Molecular Property Prediction. Journal of Chemical > Information and Modeling, 60(6), 2697=E2=80=932717. href=3D"https://doi.org/10.1021/acs.jcim.9b00975 > ">https://doi.org/10.1021/acs.j= cim.9b00975 >
>
> > > > > John > > ----------------------------------- > Professor John Kitchin (he/him/his) > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu > > > > On Fri, Dec 3, 2021 at 11:49 AM Joseph Vidal-Rosset > > wrote: > > Le 03/12/2021 =C3=A0 16:24, John Kitchin a =C3=A9crit=C2=A0: > I have= seen this > happen at times, and I think it is style and maybe > browser > dependent. > > Could you send me a small example (including the csl > file you use) that > I could look at? Dear John, In attachment, two > small examples, the same text exported with > biochimica-et-biophysica-acta.csl and with ieee-with-url.csl Best > wishes, Jo. >