emacs-orgmode@gnu.org archives
 help / color / mirror / code / Atom feed
blob db09231e9bbf1dbbbe0c406fe6e20accaaa01260 34323 bytes (raw)

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
 
;;; org-babel.el --- facilitating communication between programming languages and people

;; Copyright (C) 2009 Eric Schulte, Dan Davison

;; Author: Eric Schulte, Dan Davison
;; Keywords: literate programming, reproducible research
;; Homepage: http://orgmode.org
;; Version: 0.01

;;; License:

;; This program is free software; you can redistribute it and/or modify
;; it under the terms of the GNU General Public License as published by
;; the Free Software Foundation; either version 3, or (at your option)
;; any later version.
;;
;; This program is distributed in the hope that it will be useful,
;; but WITHOUT ANY WARRANTY; without even the implied warranty of
;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
;; GNU General Public License for more details.
;;
;; You should have received a copy of the GNU General Public License
;; along with GNU Emacs; see the file COPYING.  If not, write to the
;; Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
;; Boston, MA 02110-1301, USA.

;;; Commentary:

;; See org-babel.org in the parent directory for more information

;;; Code:
(require 'org)

(defun org-babel-execute-src-block-maybe ()
  "Detect if this is context for a org-babel src-block and if so
then run `org-babel-execute-src-block'."
  (interactive)
  (let ((info (org-babel-get-src-block-info)))
    (if info (progn (org-babel-execute-src-block current-prefix-arg info) t) nil)))

(add-hook 'org-ctrl-c-ctrl-c-hook 'org-babel-execute-src-block-maybe)

(defadvice org-edit-special (around org-babel-prep-session-for-edit activate)
  "Prepare the current source block's session according to it's
header arguments before editing in an org-src buffer.  This
function is called when `org-edit-special' is called with a
prefix argument from inside of a source-code block."
  (when current-prefix-arg
    (let* ((info (org-babel-get-src-block-info))
           (lang (first info))
           (params (third info))
           (session (cdr (assoc :session params))))
      (when (and info session) ;; if we are in a source-code block which has a session
        (funcall (intern (concat "org-babel-prep-session:" lang)) session params))))
  ad-do-it)

(defadvice org-open-at-point (around org-babel-open-at-point activate)
  "If `point' is on a source code block, then open that block's
results with `org-babel-open-src-block-results', otherwise defer
to `org-open-at-point'."
  (interactive "P")
  (or (call-interactively #'org-babel-open-src-block-result) ad-do-it))

(defun org-babel-load-in-session-maybe ()
  "Detect if this is context for a org-babel src-block and if so
then run `org-babel-load-in-session'."
  (interactive)
  (let ((info (org-babel-get-src-block-info)))
    (if info (progn (org-babel-load-in-session current-prefix-arg info) t) nil)))

(add-hook 'org-metaup-hook 'org-babel-load-in-session-maybe)

(defun org-babel-pop-to-session-maybe ()
  "Detect if this is context for a org-babel src-block and if so
then run `org-babel-pop-to-session'."
  (interactive)
  (let ((info (org-babel-get-src-block-info)))
    (if info (progn (org-babel-pop-to-session current-prefix-arg info) t) nil)))

(add-hook 'org-metadown-hook 'org-babel-pop-to-session-maybe)

(defvar org-babel-default-header-args
  '((:session . "none") (:results . "replace") (:exports . "code"))
  "Default arguments to use when evaluating a source block.")

(defvar org-babel-default-inline-header-args '((:results . "silent") (:exports . "code"))
  "Default arguments to use when evaluating an inline source block.")

(defvar org-babel-src-block-regexp nil
  "Regexp used to test when inside of a org-babel src-block")

(defvar org-babel-inline-src-block-regexp nil
  "Regexp used to test when on an inline org-babel src-block")

(defvar org-babel-min-lines-for-block-output 10
  "If number of lines of output is equal to or exceeds this
  value, the output is placed in a
  #+begin_example...#+end_example block. Otherwise the output is
  marked as literal by inserting colons at the starts of the
  lines. This variable only takes effect if the :results output
  option is in effect.")

(defun org-babel-named-src-block-regexp-for-name (name)
  "Regexp used to match named src block."
  (concat "#\\+srcname:[ \t]*" (regexp-quote name) "[ \t\n]*"
	  (substring org-babel-src-block-regexp 1)))

(defun org-babel-set-interpreters (var value)
  (set-default var value)
  (setq org-babel-src-block-regexp
	(concat "^[ \t]*#\\+begin_src \\("
		(mapconcat 'regexp-quote value "\\|")
		"\\)[ \t]*"
                "\\([ \t]+\\([^\n]+\\)\\)?\n" ;; match header arguments
                "\\([^\000]+?\\)#\\+end_src"))
  (setq org-babel-inline-src-block-regexp
	(concat "src_\\("
		(mapconcat 'regexp-quote value "\\|")
		"\\)"
                "\\(\\|\\[\\(.*\\)\\]\\)"
                "{\\([^\n]+\\)}")))

(defun org-babel-add-interpreter (interpreter)
  "Add INTERPRETER to `org-babel-interpreters' and update
`org-babel-src-block-regexp' appropriately."
  (unless (member interpreter org-babel-interpreters)
    (setq org-babel-interpreters (cons interpreter org-babel-interpreters))
    (org-babel-set-interpreters 'org-babel-interpreters org-babel-interpreters)))

(defcustom org-babel-interpreters '()
  "Interpreters allows for evaluation tags.
This is a list of program names (as strings) that can evaluate code and
insert the output into an Org-mode buffer.  Valid choices are

R          Evaluate R code
emacs-lisp Evaluate Emacs Lisp code and display the result
sh         Pass command to the shell and display the result
perl       The perl interpreter
python     The python interpreter
ruby       The ruby interpreter

The source block regexp `org-babel-src-block-regexp' is updated
when a new interpreter is added to this list through the
customize interface.  To add interpreters to this variable from
lisp code use the `org-babel-add-interpreter' function."
  :group 'org-babel
  :set 'org-babel-set-interpreters
  :type '(set :greedy t
              (const "R")
	      (const "emacs-lisp")
              (const "sh")
	      (const "perl")
	      (const "python")
	      (const "ruby")))

;;; functions
(defun org-babel-execute-src-block (&optional arg info params)
  "Execute the current source code block, and dump the results
into the buffer immediately following the block.  Results are
commented by `org-toggle-fixed-width-section'.  With optional
prefix don't dump results into buffer but rather return the
results in raw elisp (this is useful for automated execution of a
source block).

Optionally supply a value for INFO in the form returned by
`org-babel-get-src-block-info'.

Optionally supply a value for PARAMS which will be merged with
the header arguments specified at the source code block."
  (interactive)
  ;; (message "supplied params=%S" params) ;; debugging
  (let* ((info (or info (org-babel-get-src-block-info)))
         (lang (first info))
         (body (second info))
         (params (org-babel-merge-params
                  (third info) (org-babel-get-src-block-function-args) params))
         (processed-params (org-babel-process-params params))
         (result-params (third processed-params))
         (result-type (fourth processed-params))
         (cmd (intern (concat "org-babel-execute:" lang)))
         result)
    ;; (message "params=%S" params) ;; debugging statement
    (unless (member lang org-babel-interpreters)
      (error "Language is not in `org-babel-interpreters': %s" lang))
    (when arg (setq result-params (cons "silent" result-params)))
    (setq result (multiple-value-bind (session vars result-params result-type) processed-params
                   (funcall cmd body params)))
    (if (eq result-type 'value)
        (setq result (org-babel-process-value-result result result-params)))
    (org-babel-insert-result result result-params)
    (case result-type (output nil) (value result))))

(defun org-babel-load-in-session (&optional arg info)
  "Load the body of the current source-code block.  Evaluate the
header arguments for the source block before entering the
session.  After loading the body this pops open the session."
  (interactive)
  (let* ((info (or info (org-babel-get-src-block-info)))
         (lang (first info))
         (body (second info))
         (params (third info))
         (session (cdr (assoc :session params))))
    (unless (member lang org-babel-interpreters)
      (error "Language is not in `org-babel-interpreters': %s" lang))
    ;; if called with a prefix argument, then process header arguments
    (pop-to-buffer (funcall (intern (concat "org-babel-load-session:" lang)) session body params))
    (move-end-of-line 1)))

(defun org-babel-pop-to-session (&optional arg info)
  "Pop to the session of the current source-code block.  If
called with a prefix argument then evaluate the header arguments
for the source block before entering the session.  Copy the body
of the source block to the kill ring."
  (interactive)
  (let* ((info (or info (org-babel-get-src-block-info)))
         (lang (first info))
         (body (second info))
         (params (third info))
         (session (cdr (assoc :session params))))
    (unless (member lang org-babel-interpreters)
      (error "Language is not in `org-babel-interpreters': %s" lang))
    ;; copy body to the kill ring
    (with-temp-buffer (insert (org-babel-trim body)) (copy-region-as-kill (point-min) (point-max)))
    ;; if called with a prefix argument, then process header arguments
    (if arg (funcall (intern (concat "org-babel-prep-session:" lang)) session params))
    ;; just to the session using pop-to-buffer
    (pop-to-buffer (funcall (intern (format "org-babel-%s-initiate-session" lang)) session))
    (move-end-of-line 1)))

(defun org-babel-open-src-block-result (&optional re-run)
  "If `point' is on a src block then open the results of the
source code block, otherwise return nil.  With optional prefix
argument RE-RUN the source-code block is evaluated even if
results already exist."
  (interactive "P")
  (when (org-babel-get-src-block-info)
    (save-excursion
      ;; go to the results, if there aren't any then run the block
      (goto-char (or (and (not re-run) (org-babel-where-is-src-block-result))
                     (progn (org-babel-execute-src-block)
                            (org-babel-where-is-src-block-result))))
      (move-end-of-line 1) (forward-char 1)
      ;; open the results
      (if (looking-at org-bracket-link-regexp)
          ;; file results
          (org-open-at-point)
        (let ((results (org-babel-read-result)))
          (flet ((echo-res (result)
                           (if (stringp result) result (format "%S" result))))
            (pop-to-buffer (get-buffer-create "org-babel-results"))
            (delete-region (point-min) (point-max))
            (if (listp results)
                ;; table result
                (insert (orgtbl-to-generic results '(:sep "\t" :fmt echo-res)))
              ;; scalar result
              (insert (echo-res results))))))
      t)))

(defun org-babel-process-value-result (result result-params)
  "Process returned value for insertion in buffer.

Currently, this function forces to table output if :results
vector has been supplied.

  You can see below the various fragments of results-processing
code that were present in the language-specific files. Out of
those fragments, I've moved the org-babel-python-table-or-results
and org-babel-import-elisp-from-file functionality into the
org-babel-*-evaluate functions. I think those should only be used
in the :results value case, as in the 'output case we are not
concerned with creating elisp versions of results. "

  (if (and (member "vector" result-params) (not (listp result)))
      (list (list result))
    result))

(defun org-babel-execute-buffer (&optional arg)
  "Replace EVAL snippets in the entire buffer."
  (interactive "P")
  (save-excursion
    (goto-char (point-min))
    (while (re-search-forward org-babel-src-block-regexp nil t)
      (goto-char (match-beginning 0))
      (org-babel-execute-src-block arg)
      (goto-char (match-end 0)))))

(defun org-babel-execute-subtree (&optional arg)
  "Replace EVAL snippets in the entire subtree."
  (interactive "P")
  (save-excursion
    (org-narrow-to-subtree)
    (org-babel-execute-buffer)
    (widen)))

(defun org-babel-get-src-block-name ()
  "Return the name of the current source block if one exists.

This function is analogous to org-babel-lob-get-info. For both
functions, after they are called, (match-string 1) matches the
function name, and (match-string 3) matches the function
arguments inside the parentheses. I think perhaps these functions
should be renamed to bring out this similarity, perhaps involving
the word 'call'.

Currently the function `org-babel-get-src-block-function-args'
relies on the match-data from a match in this function.  I think
splitting a match and the use of it's data is bad form, and we
should re-work these two functions, perhaps combining them into
one function which returns more data than just the name. [Eric]"
  (let ((case-fold-search t)
	(head (org-babel-where-is-src-block-head)))
    (if head
	(save-excursion
	  (goto-char head)
	  (if (save-excursion
		(forward-line -1)
                ;; the second match of this regexp is used later to
                ;; find arguments in the "functional" style, where
                ;; they are passed as part of the source name line
		(looking-at "#\\+srcname:[ \t]*\\([^ ()\f\t\n\r\v]+\\)\\(\(\\(.*\\)\)\\|\\)"))
	      (org-babel-clean-text-properties (match-string 1)))))))

(defun org-babel-get-src-block-info ()
  "Return the information of the current source block as a list
of the following form.  (language body header-arguments-alist)"
  (let ((case-fold-search t) head)
    (if (setq head (org-babel-where-is-src-block-head))
        (save-excursion (goto-char head) (org-babel-parse-src-block-match))
      (if (save-excursion ;; inline source block
            (re-search-backward "[ \f\t\n\r\v]" nil t)
            (forward-char 1)
            (looking-at org-babel-inline-src-block-regexp))
          (org-babel-parse-inline-src-block-match)
        nil)))) ;; indicate that no source block was found

(defun org-babel-get-src-block-function-args ()
  (when (org-babel-get-src-block-name)
    (mapcar (lambda (ref) (cons :var ref))
	    (org-babel-ref-split-args (match-string 3)))))

(defmacro org-babel-map-source-blocks (file &rest body)
  "Evaluate BODY forms on each source-block in FILE."
  (declare (indent 1))
  `(let ((visited-p (get-buffer (file-name-nondirectory ,file))))
     (save-window-excursion
       (find-file ,file) (goto-char (point-min))
       (while (re-search-forward org-babel-src-block-regexp nil t)
         (goto-char (match-beginning 0))
         (save-match-data ,@body)
         (goto-char (match-end 0))))
     (unless visited-p (kill-buffer (file-name-nondirectory file)))))

(defun org-babel-params-from-properties ()
  "Return an association list of any source block params which
may be specified in the properties of the current outline entry."
  (save-match-data
    (delq nil
          (mapcar
           (lambda (header-arg)
             (let ((val (org-entry-get (point) header-arg)))
               (when val
                 ;; (message "param-from-property %s=%s" header-arg val) ;; debugging statement
                 (cons (intern (concat ":" header-arg)) val))))
           '("exports" "results" "session" "tangle" "var")))))

(defun org-babel-parse-src-block-match ()
  (let* ((lang (org-babel-clean-text-properties (match-string 1)))
         (lang-headers (intern (concat "org-babel-default-header-args:" lang)))
         (body (org-babel-clean-text-properties (match-string 4))))
    (list lang
          ;; get src block body removing properties, protective commas, and indentation
          (with-temp-buffer
            (save-match-data
              (insert (org-babel-strip-protective-commas body))
              (org-do-remove-indentation)
              (buffer-string)))
	  (org-babel-merge-params
	   org-babel-default-header-args
           (org-babel-params-from-properties)
	   (if (boundp lang-headers) (eval lang-headers) nil)
	   (org-babel-parse-header-arguments (org-babel-clean-text-properties (or (match-string 3) "")))))))

(defun org-babel-parse-inline-src-block-match ()
  (let* ((lang (org-babel-clean-text-properties (match-string 1)))
         (lang-headers (intern (concat "org-babel-default-header-args:" lang))))
    (list lang
          (org-babel-strip-protective-commas (org-babel-clean-text-properties (match-string 4)))
          (org-babel-merge-params
           org-babel-default-inline-header-args
           (org-babel-params-from-properties)
           (if (boundp lang-headers) (eval lang-headers) nil)
           (org-babel-parse-header-arguments (org-babel-clean-text-properties (or (match-string 3) "")))))))

(defun org-babel-parse-header-arguments (arg-string)
  "Parse a string of header arguments returning an alist."
  (if (> (length arg-string) 0)
      (delq nil
	    (mapcar
	     (lambda (arg)
	       (if (string-match "\\([^ \f\t\n\r\v]+\\)[ \f\t\n\r\v]+\\([^ \f\t\n\r\v]+.*\\)" arg)
		   (cons (intern (concat ":" (match-string 1 arg)))
			 (org-babel-chomp (match-string 2 arg)))
		 (cons (intern (concat ":" arg)) nil)))
	     (split-string (concat " " arg-string) "[ \f\t\n\r\v]+:" t)))))

(defun org-babel-process-params (params)
  "Parse params and resolve references.

Return a list (session vars result-params result-type). These are
made available to the org-babel-execute:LANG functions via
multiple-value-bind."
  (let* ((session (cdr (assoc :session params)))
	 (vars (org-babel-ref-variables params))
	 (result-params (split-string (or (cdr (assoc :results params)) "")))
	 (result-type (cond ((member "output" result-params) 'output)
			    ((member "value" result-params) 'value)
			    (t 'value))))
    (list session vars result-params result-type)))

(defun org-babel-where-is-src-block-head ()
  "Return the point at the beginning of the current source
block.  Specifically at the beginning of the #+BEGIN_SRC line.
If the point is not on a source block then return nil."
  (let ((initial (point)) top bottom)
    (or
     (save-excursion ;; on a #+srcname: line
       (beginning-of-line 1)
       (and (looking-at "#\\+srcname") (forward-line 1)
            (looking-at org-babel-src-block-regexp)
            (point)))
     (save-excursion ;; on a #+begin_src line
       (beginning-of-line 1)
       (and (looking-at org-babel-src-block-regexp)
            (point)))
     (save-excursion ;; inside a src block
       (and
        (re-search-backward "#\\+begin_src" nil t) (setq top (point))
        (re-search-forward "#\\+end_src" nil t) (setq bottom (point))
        (< top initial) (< initial bottom)
        (goto-char top) (move-beginning-of-line 1)
        (looking-at org-babel-src-block-regexp)
        (point))))))

(defun org-babel-goto-named-source-block (&optional name)
  "Go to a named source-code block."
  (interactive "ssource-block name: ")
  (let ((point (org-babel-find-named-block name)))
    (if point
        ;; taken from `org-open-at-point'
        (progn (goto-char point) (org-show-context))
      (message "source-code block '%s' not found in this buffer" name))))

(defun org-babel-find-named-block (name)
  "Find a named source-code block.
Return the location of the source block identified by
#+srcname NAME, or nil if no such block exists. Set match data
according to org-babel-named-src-block-regexp."
  (save-excursion
    (let ((case-fold-search t)
	  (regexp (org-babel-named-src-block-regexp-for-name name)) msg)
      (goto-char (point-min))
      (when (or (re-search-forward regexp nil t)
                (re-search-backward regexp nil t))
        (match-beginning 0)))))

(defun org-babel-find-named-result (name)
  "Return the location of the result named NAME in the current
buffer or nil if no such result exists."
  (save-excursion
    (goto-char (point-min))
    (when (re-search-forward ;; ellow end-of-buffer in following regexp?
	   (concat "#\\+resname:[ \t]*" (regexp-quote name) "[ \t\n\f\v\r]") nil t)
      (move-beginning-of-line 0) (point))))

(defun org-babel-where-is-src-block-result (&optional insert)
  "Return the point at the beginning of the result of the current
source block.  Specifically at the beginning of the #+RESNAME:
line.  If no result exists for this block then create a
#+RESNAME: line following the source block."
  (save-excursion
    (let* ((on-lob-line (progn (beginning-of-line 1)
			       (looking-at org-babel-lob-one-liner-regexp)))
	   (name (if on-lob-line (first (org-babel-lob-get-info)) (org-babel-get-src-block-name)))
	   (head (unless on-lob-line (org-babel-where-is-src-block-head))) end)
      (when head (goto-char head))
      (or (and name (org-babel-find-named-result name))
          (and (or on-lob-line (re-search-forward "#\\+end_src" nil t))
               (progn (move-end-of-line 1)
		      (if (eobp) (insert "\n") (forward-char 1))
		      (setq end (point))
                      (or (and (not name)
			       (progn ;; either the unnamed #+resname: line already exists
				 (re-search-forward "[^ \f\t\n\r\v]" nil t)
				 (move-beginning-of-line 1) (looking-at "#\\+resname:\n")))
			  ;; or (with optional insert) we need to back up and make one ourselves
                          (when insert
                            (goto-char end) (open-line 2) (forward-char 1)
                            (insert (concat "#+resname:" (if name (concat " " name)) "\n"))
                            (move-beginning-of-line 0) t)))
               (point))))))

(defun org-babel-read-result ()
  "Read the result at `point' into emacs-lisp."
  (cond
   ((org-at-table-p) (org-babel-read-table))
   ((looking-at ": ")
    (let ((result-string
           (org-babel-trim
            (mapconcat (lambda (line) (if (and (> (length line) 1)
                                               (string= ": " (substring line 0 2)))
                                          (substring line 2)
                                        line))
                       (split-string
                        (buffer-substring (point) (org-babel-result-end)) "[\r\n]+")
                       "\n"))))
      (or (org-babel-number-p result-string) result-string)))
   ((looking-at "^#\\+RESNAME:")
    (save-excursion (forward-line 1) (org-babel-read-result)))))

(defun org-babel-read-table ()
  "Read the table at `point' into emacs-lisp."
  (mapcar (lambda (row)
            (if (and (symbolp row) (equal row 'hline)) row
              (mapcar #'org-babel-read row)))
          (org-table-to-lisp)))

(defun org-babel-insert-result (result &optional insert)
  "Insert RESULT into the current buffer after the end of the
current source block.  With optional argument INSERT controls
insertion of results in the org-mode file.  INSERT can take the
following values...

replace - (default option) insert results after the source block
          replacing any previously inserted results

silent -- no results are inserted

file ---- the results are interpreted as a file path, and are
          inserted into the buffer using the Org-mode file syntax

raw ----- results are added directly to the org-mode file.  This
          is a good option if you code block will output org-mode
          formatted text.

org ----- this is the same as the 'raw' option

html ---- results are added inside of a #+BEGIN_HTML block.  This
          is a good option if you code block will output html
          formatted text.

latex --- results are added inside of a #+BEGIN_LATEX block.
          This is a good option if you code block will output
          latex formatted text."
  (if (stringp result)
      (progn
        (setq result (org-babel-clean-text-properties result))
        (if (member "file" insert) (setq result (org-babel-result-to-file result))))
    (unless (listp result) (setq result (format "%S" result))))
  (if (and insert (member "replace" insert) (not (member "silent" insert)))
      (org-babel-remove-result))
  (if (= (length result) 0)
      (if (member "value" result-params)
	  (message "No result returned by source block")
	(message "Source block produced no output"))
    (if (and insert (member "silent" insert))
        (progn (message (replace-regexp-in-string "%" "%%" (format "%S" result))) result)
      (when (and (stringp result) ;; ensure results end in a newline
                 (not (or (string-equal (substring result -1) "\n")
                          (string-equal (substring result -1) "\r"))))
        (setq result (concat result "\n")))
      (save-excursion
	(let ((existing-result (org-babel-where-is-src-block-result t)))
	  (when existing-result (goto-char existing-result) (forward-line 1)))
        (if (stringp result) ;; assume the result is a table if it's not a string
            (if (member "file" insert)
                (insert result)
              (if (member "html" insert)
                  (insert (format "#+BEGIN_HTML\n%s#+END_HTML\n" result))
                (if (member "latex" insert)
                    (insert (format "#+BEGIN_LaTeX\n%s#+END_LaTeX\n" result))
                  (if (or (member "raw" insert) (member "org" insert))
                      (progn (save-excursion (insert result))
                             (if (org-at-table-p) (org-cycle)))
                    (org-babel-examplize-region (point) (progn (insert result) (point)))))))
          (progn
            (insert
             (concat (orgtbl-to-orgtbl
                      (if (and (listp (car result)) (listp (cdr (car result))))
                          result (list result))
                      '(:fmt (lambda (cell) (format "%S" cell)))) "\n"))
            (forward-line -1)
            (org-cycle))))
      (message "finished"))))

(defun org-babel-result-to-org-string (result)
  "Return RESULT as a string in org-mode format.  This function
relies on `org-babel-insert-result'."
  (with-temp-buffer (org-babel-insert-result result) (buffer-string)))

(defun org-babel-remove-result ()
  "Remove the result of the current source block."
  (interactive)
  (save-excursion
    (goto-char (org-babel-where-is-src-block-result t)) (forward-line 1)
    (delete-region (point) (org-babel-result-end))))

(defun org-babel-result-end ()
  "Return the point at the end of the current set of results"
  (save-excursion
    (if (org-at-table-p)
        (progn (goto-char (org-table-end)) (point))
      (let ((case-fold-search t))
        (cond
         ((looking-at "#\\+begin_latex")
          (search-forward "#+end_latex" nil t)
          (forward-line 1))
         ((looking-at "#\\+begin_html")
          (search-forward "#+end_html" nil t)
          (forward-line 1))
         ((looking-at "#\\+begin_example")
          (search-forward "#+end_example" nil t)
          (forward-line 1))
         (t (progn (while (looking-at "\\(: \\|\\[\\[\\)")
                     (forward-line 1))))))
      (point))))

(defun org-babel-result-to-file (result)
  "Return an `org-mode' link with the path being the value or
RESULT, and the display being the `file-name-nondirectory' if
non-nil."
  (concat "[[file:" result "]]"))

(defun org-babel-examplize-region (beg end)
  "Comment out region using the ': ' org example quote."
  (interactive "*r")
  (let ((size (abs (- (line-number-at-pos end)
		      (line-number-at-pos beg)))))
    (save-excursion
      (cond ((= size 0)
	     (error "This should be impossible: a newline was appended to result if missing")
	     (let ((result (buffer-substring beg end)))
	       (delete-region beg end)
	       (insert (concat ": " result))))
	    ((< size org-babel-min-lines-for-block-output)
	     (goto-char beg)
	     (dotimes (n size)
	       (move-beginning-of-line 1) (insert ": ") (forward-line 1)))
	    (t
	     (goto-char beg)
	     (insert "#+begin_example\n")
	     (forward-char (- end beg))
	     (insert "#+end_example\n"))))))

(defun org-babel-merge-params (&rest plists)
  "Combine all parameter association lists in PLISTS.  Later
elements of PLISTS override the values of previous element.  This
takes into account some special considerations for certain
parameters when merging lists."
  (let ((results-exclusive-groups
	 '(("file" "vector" "scalar" "raw" "org" "html" "latex")
	   ("replace" "silent")
	   ("output" "value")))
	params results exports tangle vars var ref)
    (flet ((e-merge (exclusive-groups &rest result-params)
                    ;; maintain exclusivity of mutually exclusive parameters
                    (let (output)
                      (mapc (lambda (new-params)
                              (mapc (lambda (new-param)
                                      (mapc (lambda (exclusive-group)
                                              (when (member new-param exclusive-group)
                                                (mapcar (lambda (excluded-param)
                                                          (setq output (delete excluded-param output)))
                                                        exclusive-group)))
                                            exclusive-groups)
                                      (setq output (org-uniquify (cons new-param output))))
                                    new-params))
                            result-params)
                      output)))
      (mapc (lambda (plist)
              (mapc (lambda (pair)
                      (case (car pair)
                        (:var
                         ;; we want only one specification per variable
                         (when (string-match "^\\([^= \f\t\n\r\v]+\\)[ \t]*=[ \t]*\\([^\f\n\r\v]+\\)$" (cdr pair))
                           ;; TODO: When is this not true?
                           (setq var (intern (match-string 1 (cdr pair)))
                                 ref (match-string 2 (cdr pair))
                                 vars (cons (cons var ref) (assq-delete-all var vars)))))
                        (:results
                         (setq results
			       (e-merge results-exclusive-groups results (split-string (cdr pair)))))
			(:file
			 (when (cdr pair)
			   (setq results (e-merge results-exclusive-groups results '("file")))
			   (setq params (cons pair (assq-delete-all (car pair) params)))))
                        (:exports
                         (setq exports (e-merge '(("code" "results" "both" "none"))
                                                exports (split-string (cdr pair)))))
                        (:tangle
                         (setq tangle (e-merge '(("yes" "no"))
                                               tangle (split-string (cdr pair)))))
                        (t ;; replace: this covers e.g. :session
                         (setq params (cons pair (assq-delete-all (car pair) params))))))
                    plist))
            plists))
    (setq vars (mapcar (lambda (pair) (format "%s=%s" (car pair) (cdr pair))) vars))
    (while vars (setq params (cons (cons :var (pop vars)) params)))
    (cons (cons :tangle (mapconcat 'identity tangle " "))
          (cons (cons :exports (mapconcat 'identity exports " "))
                (cons (cons :results (mapconcat 'identity results " "))
                      params)))))

(defun org-babel-clean-text-properties (text)
  "Strip all properties from text return."
  (set-text-properties 0 (length text) nil text) text)

(defun org-babel-strip-protective-commas (body)
  "Strip protective commas from bodies of source blocks."
  (replace-regexp-in-string "^,#" "#" body))

(defun org-babel-read (cell)
  "Convert the string value of CELL to a number if appropriate.
Otherwise if cell looks like lisp (meaning it starts with a
\"(\" or a \"'\") then read it as lisp, otherwise return it
unmodified as a string.

This is taken almost directly from `org-read-prop'."
  (if (and (stringp cell) (not (equal cell "")))
      (or (org-babel-number-p cell)
          (if (or (equal "(" (substring cell 0 1))
                  (equal "'" (substring cell 0 1)))
              (read cell)
            (progn (set-text-properties 0 (length cell) nil cell) cell)))
    cell))

(defun org-babel-number-p (string)
  "Return t if STRING represents a number"
  (if (and (string-match "^-?[[:digit:]]*\\.?[[:digit:]]*$" string)
           (= (match-end 0) (length string)))
      (string-to-number string)))

(defun org-babel-import-elisp-from-file (file-name)
  "Read the results located at FILE-NAME into an elisp table.  If
the table is trivial, then return it as a scalar."
  (let (result)
    (with-temp-buffer
      (condition-case nil
          (progn
            (org-table-import file-name nil)
            (delete-file file-name)
            (setq result (mapcar (lambda (row)
                                   (mapcar #'org-babel-string-read row))
                                 (org-table-to-lisp))))
        (error nil)))
    (if (null (cdr result)) ;; if result is trivial vector, then scalarize it
	(if (consp (car result))
	    (if (null (cdr (car result)))
		(caar result)
	      result)
	  (car result))
      result)))

(defun org-babel-string-read (cell)
  "Strip nested \"s from around strings in exported R values."
  (org-babel-read (or (and (stringp cell)
                           (string-match "\\\"\\(.+\\)\\\"" cell)
                           (match-string 1 cell))
                      cell)))

(defun org-babel-reverse-string (string)
  (apply 'string (reverse (string-to-list string))))

(defun org-babel-chomp (string &optional regexp)
  "Remove any trailing space or carriage returns characters from
STRING.  Default regexp used is \"[ \f\t\n\r\v]\" but can be
overwritten by specifying a regexp as a second argument."
  (while (and (> (length string) 0) (string-match "[ \f\t\n\r\v]" (substring string -1)))
    (setq string (substring string 0 -1)))
  string)

(defun org-babel-trim (string &optional regexp)
  "Like `org-babel-chomp' only it runs on both the front and back of the string"
  (org-babel-chomp (org-babel-reverse-string
                    (org-babel-chomp (org-babel-reverse-string string) regexp)) regexp))

(provide 'org-babel)
;;; org-babel.el ends here

debug log:

solving db09231 ...
found db09231 in https://git.savannah.gnu.org/cgit/emacs/org-mode.git

Code repositories for project(s) associated with this public inbox

	https://git.savannah.gnu.org/cgit/emacs/org-mode.git

This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).