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From: Shiyuan <gshy2014@gmail.com>
To: emacs-orgmode@gnu.org
Subject: Babel-R TBLFM example
Date: Tue, 24 Jun 2014 23:55:46 -0700	[thread overview]
Message-ID: <CAOm4EMty9PkJY5t=B-ysLb53MSzD2R8Df9YR561GifgQoxqktw@mail.gmail.com> (raw)

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Hi all,
    I am looking at the Babel R example in
http://orgmode.org/worg/org-tutorials/org-R/org-R.html

This short example show how to use code block in Org Tables.
The example first makes an org-mode table, which I can follow and reproduce
the result:

#+name: tbl-example-data()
#+begin_src R
runif(n=5, min=0, max=1)
#+end_src

#+RESULTS: tbl-example-data
|  0.118510485393927 |
|  0.742342338664457 |
|  0.438421099446714 |
| 0.0867570964619517 |
|  0.604204315226525 |

Then it defines r source code block and use TBLFM

#+name: R-mean(x)
#+begin_src R
mean(x)
#+end_src

#+RESULTS: R-mean

#+tblname: summaries
| mean   |
|--------|
| #ERROR |
#+TBLFM: @2$1='(sbe "R-mean" (x "tbl-example-data()"))

When I export to html(C-c C-e h o), the  #+TBLFM seems to be ignored and
shows  no effect. When I place my cursor in the table and recalculate the
table formula using C-u C-c C-c in the table. I got an error as shown
above.   In the *Message* buffer, I can see the following messages.
byte-code: Beginning of buffer [8 times]
Re-applying formulas to full table...
Re-applying formula to field: @2$1
Re-applying formulas to full table...(line 1)
Re-applying formula to field: @2$1
Re-applying formulas to 1 lines...done
Re-applying formulas...done [2 times]

Any steps I missed? I am using org mode 8.2.6

Also, I found this tutorial for org-R
http://orgmode.org/worg/org-tutorials/org-R/org-R.html, however, the
org-R-apply function seems no longer available in my org mode 8.2.6. Is
org-R supposed to be deprecated?

Thanks.

Shiyuan

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next             reply	other threads:[~2014-06-25  6:55 UTC|newest]

Thread overview: 9+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2014-06-25  6:55 Shiyuan [this message]
2014-07-28 13:21 ` Babel-R TBLFM example Bastien
2014-07-29  6:15   ` Shiyuan
2014-07-29 13:20     ` Bastien
2014-08-24 23:02       ` Shiyuan
2014-08-25  7:51         ` Sebastien Vauban
2014-08-26  6:18           ` Shiyuan
2014-08-26  6:57             ` Thomas S. Dye
2014-08-26  7:23               ` Sebastien Vauban

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