On Mon, May 25, 2015 at 8:30 PM, John Kitchin wrote: > With emacs -Q, and this org file: > > #+BEGIN_SRC emacs-lisp > (org-babel-do-load-languages > 'org-babel-load-languages > '((emacs-lisp . t) > (python . t))) > #+END_SRC > > #+RESULTS: > > #+BEGIN_SRC python :session with_matplotlib :results file :exports both > import matplotlib > matplotlib.use('Agg') > import matplotlib.pyplot as plt > fig=plt.figure(figsize=(3,2)) > plt.plot([1,3,2]) > plt.savefig('myfig.png') > 'myfig.png' > #+END_SRC > > #+RESULTS: > [[file:myfig.png]] > > I get what you expect to happen. In my customized emacs, I get something > else that is more like you see. > I use emacs that come from MacPorts, so for -Q option I start it using: /Applications/MacPorts/Emacs.app/Contents/MacOS/Emacs -Q Your minimal example doesn't work for me, and in the results block I get: #+RESULTS: [[file:]] This is basically, the same problematic result that I get when using my regular initialized emacs. > > > John > > ----------------------------------- > Professor John Kitchin > Doherty Hall A207F > Department of Chemical Engineering > Carnegie Mellon University > Pittsburgh, PA 15213 > 412-268-7803 > @johnkitchin > http://kitchingroup.cheme.cmu.edu > > > On Mon, May 25, 2015 at 2:22 PM, Dror Atariah wrote: > >> On Mon, May 25, 2015 at 7:29 PM, Ken Mankoff wrote: >> >>> >>> On 2015-05-25 at 13:25, Dror Atariah wrote: >>> > I am sorry for reposting, but I'm still in the dark. Am I the only one >>> who >>> > experience this kind of issue? >>> >>> Don't know. >>> >>> > Did someone managed to reproduce the problem? >>> >>> I could not reproduce it. >>> >>> > Does anyone see this message? :) >>> >>> Yes. >>> >> >> Thanks for your reply!!!! :) >> >> >>> >>> I'm on Mac too, which is where your problem is. Are you starting with >>> "emacs -Q"? I haven't seen you post a full MWE with both =init.el= and = >>> test.org=. You did provide a test Org file but it wasn't clear to me if >>> that was being used with emacs -Q. >>> >>> I tried to evaluate the problematic file using =emacs -Q= and the >> problem is the same. >> >> Following is the section of my =init.el= that deals with org-mode (if you >> need more, let me know): >> >> >> ------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------ >> ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; >> ;; Org Mode related >> ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;; >> >> (setq org-directory "~/Dropbox/org") >> >> ;; Set a location for the list of agena files >> (setq org-agenda-files "~/.emacs.d/agenda_files") >> >> ;; Assigns org-mode to .org files >> (add-to-list 'auto-mode-alist '("\\.org$" . org-mode)) >> (define-key global-map "\C-cl" 'org-store-link) >> (define-key global-map "\C-ca" 'org-agenda) >> (setq org-log-done t) >> (when window-system (require 'org-mouse)) >> >> ;; Auto enable flyspell-mode >> (add-hook 'org-mode-hook 'turn-on-flyspell) >> >> ;; Auto fill minor mode in org files >> (add-hook 'org-mode-hook 'turn-on-auto-fill) >> >> ;; Enable org-indent-mode for org buffers >> (add-hook 'org-mode-hook >> (lambda ()(org-indent-mode t)) t) >> >> ;; Use text-mode abbrev table in org-mode >> (add-hook 'org-mode-hook '(lambda () (setq local-abbrev-table >> text-mode-abbrev-table))) >> >> ;; Enables selection using SHIFT, while maintaining useful actions >> ;; related to SHITF in org >> (setq org-support-shift-select 't) >> >> ;; Enable smart qoutes (http://stackoverflow.com/q/15097114/671013) >> (setq org-export-with-smart-quotes t) >> >> ;; Customize the TODO-like keywords >> (setq org-use-fast-todo-selection t) >> (setq org-todo-keywords >> '((sequence "TODO(t)" "PROCESS(p@/!)" "|" "DONE(d!)" "CANCELED(c@ >> /!)"))) >> (setq org-todo-keyword-faces >> (quote (("TODO" :foreground "red" :weight bold) >> ("PROCESS" :foreground "blue" :weight bold) >> ("DONE" :foreground "forest green" :weight bold) >> ("CANCELLED" :foreground "forest green" :weight bold)))) >> (setq org-log-into-drawer t) >> >> ;; Capture-org >> (setq org-default-notes-file (concat org-directory "/notes.org")) >> (define-key global-map "\C-cc" 'org-capture) >> >> (setq org-capture-templates >> (quote (("t" "todo" entry (file (concat org-directory "/gtd.org")) >> "* TODO %?\n%U\n%a\n" :clock-in t :clock-resume t) >> ("n" "note" entry (file (concat org-directory "/gtd.org")) >> "* %? :NOTE:\n%U\n%a\n" :clock-in t :clock-resume t) >> ("j" "Journal" entry (file+datetree (concat org-directory "/ >> diary.org")) >> "* %?\n%U\n" :clock-in t :clock-resume t) >> ("v" "Vocabulary" entry >> (file+headline (concat org-directory "/vocab.org") >> "Vocabulary") >> "* %^{The word} :drill:\n:PROPERTIES:\n:Part-of-speech: >> %^{Part of speech|verb|noun|adj|adv}\n:END:\n %t\n %^{Extended word (may be >> empty)} \n** Answer \n%^{The definition}") >> ))) >> >> ;; Make use of refTeX in org-mode >> (defun org-mode-reftex-setup () >> "Setups RefTeX to be used with a org file. Code is based on >> http://www.mfasold.net/blog/2009/02/using-emacs-org-mode-to-draft-papers/ >> . >> >> Once you run this, you will be asked to set a master file of the org." >> (interactive) >> (load-library "reftex") >> (and (buffer-file-name) >> (file-exists-p (buffer-file-name)) >> (reftex-parse-all)) >> (define-key org-mode-map (kbd "C-c )") 'reftex-citation) >> ) >> >> ;; Open indirect buffer in new frame >> (setq org-indirect-buffer-display 'new-frame) >> >> ;; Set common TAGS >> ;; Check: >> http://sachachua.com/blog/2008/01/tagging-in-org-plus-bonus-code-for-timeclocks-and-tags/ >> (setq org-tag-alist '( >> ("PRIVATE" . ?p) >> (:startgroup . nil) >> ("WORK" .?w) >> (:grouptags . nil) >> ("WORK@mittagseminar" . ?m) >> ("WORK@open_questions" . ?i) >> ("WORK@diss" . ?d) >> ("WORK@CV" . nil) >> (:endgroup . nil) >> (:startgroup . nil) >> ("IT" . ?I) >> (:grouptags . nil) >> ("IT@emacs" . nil) >> ("IT@git" . nil) >> ("IT@TeX" . nil) >> (:endgroup . nil) >> (:startgroup . nil) >> ("PROG" . ?p) >> (:grouptags . nil) >> ("PROG@mathematica" . nil) >> ("PROG@cgal" . nil) >> (:endgroup . nil) >> (:endgroup . nil) >> ("4freeTime" . ?4) >> )) >> >> ;; Targets include this file and any file contributing to the agenda - up >> to 9 levels deep >> (setq org-refile-targets (quote ((nil :maxlevel . 9) >> (org-agenda-files :maxlevel . 9)))) >> >> ;; Add time stamp of refiling >> (setq org-log-refile 'time) >> >> ;; Use full outline paths for refile targets - we file directly with IDO >> (setq org-refile-use-outline-path t) >> >> ;; Targets complete directly with IDO >> (setq org-outline-path-complete-in-steps nil) >> >> ;; Allow refile to create parent tasks with confirmation >> (setq org-refile-allow-creating-parent-nodes (quote confirm)) >> >> ;; Use IDO for both buffer and file completion and ido-everywhere to t >> (setq org-completion-use-ido t) >> (setq ido-everywhere t) >> (setq ido-max-directory-size 100000) >> (ido-mode (quote both)) >> >> ;; set latexmk the default LaTeX compiler for org-mode and in general >> (setq org-latex-to-pdf-process (list "latexmk -f -pdf %f")) >> >> ;; Enable clocking across sessions >> (setq org-clock-persist 'history) >> (org-clock-persistence-insinuate) >> >> ;; Set the number of clock items before wrapping them in a LOGBOOK drawer >> (setq org-clock-into-drawer '2) >> >> ;; Set the number of clock items before wrapping them in a LOGBOOK drawer >> (setq org-clock-into-drawer '2) >> >> ;; MobileOrg >> (load "mobileorg-setup") >> >> ;; Org drill >> (require 'org-drill) >> (setq org-drill-save-buffers-after-drill-sessions-p nil) >> (setq org-drill-scope 'file-no-restriction) >> >> ;; org2blog >> (require 'metaweblog) >> (require 'org2blog-autoloads) >> >> ;; Babel >> (setq org-src-preserve-indentation t) ;; >> http://stackoverflow.com/a/20903001/671013 >> >> (setq org-src-fontify-natively t) >> >> (setq org-confirm-babel-evaluate nil) >> >> (org-babel-do-load-languages >> 'org-babel-load-languages >> '((elasticsearch . t) >> (emacs-lisp . t) >> (python . t) >> (R . t))) >> >> ------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------8<------ >> >> Best, >> Dror >> > > -- Dror Atariah, Ph.D. de.linkedin.com/in/atariah