I am still helpless here. Any idea how to debug the problem? I would be happy to provide any kind of help, but I just cannot do it myself. Further findings: 1) I don't think that matplotlib changes Python's '_', since the tmp file that contains the content of '_' is correct. 2) Somehow, emacs/orgmode fails to extract the filename. 3) It doesn't work also when using emacs 24.5 and orgmode 8.2.10. Following is an org file that tries to summarize the issue: #+TITLE: Integrate matplotlib figures in an org mode buffer * Goal The ultimate goal is to use org-babel as a replacement of IPython. The first motivation is to enable an easier version controling of the document. The first challenge I faced is integration of plots returned by ~matplotlib~ in the org buffer. * Capturing filename I would like to use (babel) orgmode as an interactive python notebook. Therefore, in order to allow the various code blocks to "know" each other, it is important to use the ~:session~ option. However, once ~:session~ is used, together with ~matplotlib~ the desired behavior is no longer in place. * Clean testing, no Matplotlib For the sake of testing, the following merely suppose to return the filename #+BEGIN_SRC python :session no_matplotlib :results file :exports both x = 'hello ' y = 'world' z = x + y 'foo.bar' #+END_SRC #+RESULTS: [[file:foo.bar]] *Passed* Indeed, the ~RESULTS~ block contains a link to the filename indicated by the last string. * Importing Matplotlib The following minimal example should generate a simple figure, ~myfig.png~, and orgmode should capture it and interpret it as a filename to be used by the following ~RESULTS~ block. #+BEGIN_SRC python :session with_matplotlib :results file :exports both import matplotlib matplotlib.use('Agg') import matplotlib.pyplot as plt fig=plt.figure(figsize=(3,2)) plt.plot([1,3,2]) plt.savefig('myfig.png') 'myfig.png' #+END_SRC #+RESULTS: [[file:]] *Failed!* This time, it doesn't work anymore. The file ~myfig.png~ is properly generated, but the last string is not captured by ~matplotlib~. Following is the content of the corresponding interactive python session: #+BEGIN_SRC Process with_matplotlib finished Python 3.4.3 (default, Mar 10 2015, 14:53:35) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] on darwin Type "help", "copyright", "credits" or "license" for more information. >>> >>> >>> , '''/var/folders/kz/1c2cxn1x60n_t5p2j1p02b180000gn/T/py32771xVI''', 'exec')); import matplotlib >>> import matplotlib matplotlib.use('Agg') matplotlib.use('Agg') import matplotlib.pyplot as plt import matplotlib.pyplot as plt fig=plt.figure(figsize=(3,2)) fig=plt.figure(figsize=(3,2)) plt.plot([1,3,2]) plt.plot([1,3,2]) plt.savefig('myfig.png') plt.savefig('myfig.png') 'myfig.png' 'myfig.png' open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b180000gn/T/babel-32771x4j/python-32771-fO', 'w').write(str(_)) open('/var/folders/kz/1c2cxn1x60n_t5p2j1p02b180000gn/T/babel-32771x4j/python-32771-fO', 'w').write(str(_)) 'org_babel_python_eoe' 'org_babel_python_eoe' >>> [] >>> 'myfig.png' >>> >>> 9 >>> >>> >>> 'org_babel_python_eoe' >>> #+END_SRC * Some background ** Python Version #+BEGIN_SRC python :session background :results raw import sys sys.version #+END_SRC #+RESULTS: 3.4.3 (default, Mar 10 2015, 14:53:35) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] ** Matplotlib version #+BEGIN_SRC python :session background :results raw import matplotlib matplotlib.__version__ #+END_SRC #+RESULTS: 1.4.3 ** System I am running Emacs version ~GNU Emacs 24.5.1 (x86_64-apple-darwin14.1.0, NS apple-appkit-1344.72) of 2015-04-19 on tenten-slave.macports.org~ The orgmode version is: ~Org-mode version 8.2.10 (8.2.10-40-gc763fa-elpaplus @ /Users/drorata/.emacs.d/elpa/org-plus-contrib-20150518/)~ ** Stackoverflow reference I also posted a question in the SE network: [[ http://emacs.stackexchange.com/questions/11075/org-mode-python-session-does-not-return-a-file-name ]] * Question So, my question is how to tackle/debug this issue? Can someone give me a hand here? That would be really great! Thanks!