From mboxrd@z Thu Jan 1 00:00:00 1970 From: John Kitchin Subject: Re: Using org-ref to automatically download articles from Pubmed that satisfies a given search term Date: Mon, 8 Jan 2018 17:37:14 -0500 Message-ID: References: <410D0E64-1A87-4EE8-AB9F-990292C3209A@ur.rochester.edu> Mime-Version: 1.0 Content-Type: multipart/alternative; boundary="f403043977bca1e27305624b700a" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:44633) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1eYg2g-0003x1-6K for emacs-orgmode@gnu.org; Mon, 08 Jan 2018 17:37:19 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1eYg2f-0000aJ-1k for emacs-orgmode@gnu.org; Mon, 08 Jan 2018 17:37:18 -0500 Received: from mail-wr0-x22a.google.com ([2a00:1450:400c:c0c::22a]:42609) by eggs.gnu.org with esmtps (TLS1.0:RSA_AES_128_CBC_SHA1:16) (Exim 4.71) (envelope-from ) id 1eYg2e-0000Zp-OP for emacs-orgmode@gnu.org; Mon, 08 Jan 2018 17:37:16 -0500 Received: by mail-wr0-x22a.google.com with SMTP id w107so12328510wrb.9 for ; Mon, 08 Jan 2018 14:37:16 -0800 (PST) In-Reply-To: <410D0E64-1A87-4EE8-AB9F-990292C3209A@ur.rochester.edu> List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: "Emacs-orgmode" To: "Doyley, Marvin M." Cc: "emacs-orgmode@gnu.org" --f403043977bca1e27305624b700a Content-Type: text/plain; charset="UTF-8" There is a command in org-ref-pubmed that will download a bibtex entry from a pmid: pubmed-insert-bibtex-from-pmid. There is also the commands: pubmed-simple-search which will prompt for a query and open the search in pubmed, the command "pubmed" which just opens the pubmed site, and "pubmed-advanced" which opens the advances search page. There isn't however, anything as sophisticated as you want for pubmed. You would have to use it to get the DOIs, and then use the doi-add-bibtex-entry function to get the bibtex entry and (if it knows how) the pdf. John ----------------------------------- Professor John Kitchin Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 @johnkitchin http://kitchingroup.cheme.cmu.edu On Mon, Jan 8, 2018 at 3:32 PM, Doyley, Marvin M. wrote: > Hi there, > > I am in the process of writing a broad literature review and was wondering > if there is a way to get org-ref to search Pubmed and automatically pull > (pdf, abstracts, etc) all the papers that satisfy a given search terms > (year range, keyword, authors) ? > > Thanks, > > M > > > > > > --f403043977bca1e27305624b700a Content-Type: text/html; charset="UTF-8" Content-Transfer-Encoding: quoted-printable
There is a command in org-ref-pubmed that will download a = bibtex entry from a pmid:=C2=A0pubmed-insert-bibtex-from-pmid. There is als= o the commands: pubmed-simple-search which will prompt for a query and open= the search in pubmed, the command "pubmed" which just opens the = pubmed site, and "pubmed-advanced" which opens the advances searc= h page.

There isn't however, anything as sophisticat= ed as you want for pubmed. You would have to use it to get the DOIs, and th= en use the doi-add-bibtex-entry function to get the bibtex entry and (if it= knows how) the pdf.

John

--------------------------= ---------
Professor John Kitchin=C2=A0
Doherty Hall A207F
Departme= nt of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA = 15213
412-268-7803

On Mon, Jan 8, 2018 at 3:32 PM, Doyley, Marv= in M. <m.doyley@rochester.edu> wrote:
Hi there,

I am in the process of writing a broad literature review and was wondering = if there is a way to get org-ref to search Pubmed and automatically pull (p= df, abstracts, etc) all the papers that satisfy a given=C2=A0 search terms = (year range, keyword, authors) ?

Thanks,

M






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