From mboxrd@z Thu Jan 1 00:00:00 1970 From: John Kitchin Subject: Re: org-ref in action Date: Wed, 6 Aug 2014 08:51:16 -0400 Message-ID: References: <87tx73h93a.fsf@gmail.com> <87ha32hggg.fsf@gmail.com> <87d2dqhf3c.fsf@gmail.com> <85bnryr6f3.fsf@andrew.cmu.edu> Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=047d7b5d65968b739004fff56dec Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:55920) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1XF0gZ-0008CP-Rw for emacs-orgmode@gnu.org; Wed, 06 Aug 2014 08:51:21 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1XF0gY-0003fG-4F for emacs-orgmode@gnu.org; Wed, 06 Aug 2014 08:51:19 -0400 Received: from mail-pa0-x231.google.com ([2607:f8b0:400e:c03::231]:45287) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1XF0gX-0003f8-PX for emacs-orgmode@gnu.org; Wed, 06 Aug 2014 08:51:18 -0400 Received: by mail-pa0-f49.google.com with SMTP id hz1so3350911pad.22 for ; Wed, 06 Aug 2014 05:51:16 -0700 (PDT) In-Reply-To: List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Xebar Saram Cc: "Liste-emacs-orgmode@gnu.org" , Eric Schulte , Joseph Vidal-Rosset --047d7b5d65968b739004fff56dec Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable I am not familiar with jabref, but assuming it stores the entries in a regular bibtex format, and you have the bibtex file open in emacs, with the cursor on the entry you want to make a heading for, you run M-x org-ref-open-bibtex-notes. That creates something like an org-bibtex heading in your org-ref-bibliography-notes file, but it is probably a little different. I haven't used org-bibtex, and I didn't try to make it exactly the same. If you try it and tell me what is missing, I can make it be more like org-bibtex. The format there is not critical to me. John ----------------------------------- John Kitchin Professor Doherty Hall A207F Department of Chemical Engineering Carnegie Mellon University Pittsburgh, PA 15213 412-268-7803 http://kitchingroup.cheme.cmu.edu On Wed, Aug 6, 2014 at 6:54 AM, Xebar Saram wrote: > Thanks John > > No worries :) ive installed it and its working great. > > in a related question, does anyone use it with jabef? > > the reason im asking is that im very new to this and wonder about a > possible workflow to export a bib citation from jabref to org and create = an > org header (per reference). so far it seems like org-ref will only insert > something like > cite:REF > I have played around with org-bibtex and seem to remember there was a > org-bibtex yank function that created a header in org from the bib citati= on > in clipboard, can org-ref do something similar? > > sorry for the neewb questions > > z > > > > > > On Wed, Aug 6, 2014 at 12:08 AM, John Kitchin > wrote: > >> Hi, it got moved in a re-organization to >> https://github.com/jkitchin/jmax/blob/master/org/org-ref.org. >> >> Sorry for the inconvenience! >> >> Xebar Saram writes: >> >> > Hi all >> > >> > the github link seems dead, anyone knows where one could get and try >> > org-ref from? >> > >> > z >> > >> > On Mon, Jun 30, 2014 at 2:27 PM, Joseph Vidal-Rosset >> > wrote: >> > >> > Thanks Eric, it works now, with the latest version of org-mode. >> > >> > Best wishes >> > >> > Jo. >> > >> > >> > >> > >> > 2014-06-30 12:22 GMT+02:00 Eric Schulte : >> > >> > >> > >> > > Thanns to the default cite action, I get for example in my >> > org file: >> > > >> > > [[cite:(119=E2=80=93136)johansson36:_minim_formal]] >> > > >> > > and it creates no reference at al, because via the export I >> > get: >> > > >> > > \cite{(119=E2=80=93136)johansson36:_minim_formal} >> > > >> > >> > >> > Using the latest version of Org-mode from the git repository, >> > this is a >> > very new feature and requires usage of the git version of >> > Org-mode, I am >> > seeing the desired behavior. After simply requiring ox-bibtex, >> > the >> > following >> > >> > * H1 >> > [[cite:(119=E2=80=93136)johansson36:_minim_formal]] >> > >> > exports to >> > >> > \begin{document} >> > >> > \maketitle >> > \tableofcontents >> > >> > \section{H1} >> > \label{sec-1}~\cite[119=E2=80=93136]{johansson36:_minim_formal= } >> > % Emacs 24.4.50.2 (Org mode beta_8.3) >> > \end{document} >> > >> > As expected. >> > >> > I hope this helps, >> > Eric >> > >> > >> > >> > -- >> > Eric Schulte >> > https://cs.unm.edu/~eschulte >> > PGP: 0x614CA05D (see https://u.fsf.org/yw) >> > >> > >> > >> > >> > >> >> -- >> ----------------------------------- >> John Kitchin >> Professor >> Doherty Hall A207F >> Department of Chemical Engineering >> Carnegie Mellon University >> Pittsburgh, PA 15213 >> 412-268-7803 >> http://kitchingroup.cheme.cmu.edu >> > > --047d7b5d65968b739004fff56dec Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
I am not familiar with jabref, but assuming it stores the = entries in a regular bibtex format, and you have the bibtex file open in em= acs, with the cursor on the entry you want to make a heading for, you run M= -x=C2=A0org-ref-open-bibtex-notes.

That creates something like an org-bibtex heading in your or= g-ref-bibliography-notes file, but it is probably a little different. I hav= en't used org-bibtex, and I didn't try to make it exactly the same.= If you try it and tell me what is missing, I can make it be more like org-= bibtex. The format there is not critical to me.=C2=A0

Jo= hn

-----------------------------------
John Kitchin
Professor<= br>Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mel= lon University
Pittsburgh, PA 15213
412-268-7803
http://kitchingroup.cheme.cmu.edu

<= /div>


On Wed, Aug 6, 2014 at 6:54 AM, Xebar Sa= ram <zeltakc@gmail.com> wrote:
Thanks John

No worries :) ive installed= it and its working great.

in a related question, do= es anyone use it with jabef?

the reason im asking = is that im very new to this and wonder about a possible workflow to export = a bib citation from jabref to org and create an org header (per reference).= so far it seems like org-ref will only insert something like
cite:REF
I have played around with org-bibtex and seem to re= member there was a org-bibtex yank function that created a header in org fr= om the bib citation in clipboard, can org-ref do something similar?

sorry for the neewb questions

= z





On Wed, Aug 6, 2014 at 12:08 AM, John Kitchin <jkitchin@andrew.cmu.e= du> wrote:
Hi, it got moved in a re-organization to
https://github.com/jkitchin/jmax/blob/master/org/org-ref.or= g.

Sorry for the inconvenience!

Xebar Saram <zelt= akc@gmail.com> writes:

> Hi all
>
> the github link seems dead, anyone knows where one could get and try > org-ref from?
>
> z
>
> On Mon, Jun 30, 2014 at 2:27 PM, Joseph Vidal-Rosset
> <joseph.vidal.rosset@gmail.com> wrote:
>
> =C2=A0 =C2=A0 Thanks Eric, it works now, with the latest version of or= g-mode.
>
> =C2=A0 =C2=A0 Best wishes
>
> =C2=A0 =C2=A0 Jo.
>
>
>
>
> =C2=A0 =C2=A0 2014-06-30 12:22 GMT+02:00 Eric Schulte <schulte.eric@gmail.com&= gt;:
>
>
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 > Thanns to the default cite action, I = get for example in my
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 org file:
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 >
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 > [[cite:(119=E2=80=93136)johansson36:_= minim_formal]]
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 >
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 > and it creates no reference at al, be= cause via the export I
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 get:
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 >
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 > \cite{(119=E2=80=93136)johansson36:_m= inim_formal}
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 >
>
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 Using the latest version of Org-mode from = the git repository,
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 this is a
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 very new feature and requires usage of the= git version of
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 Org-mode, I am
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 seeing the desired behavior. After simply = requiring ox-bibtex,
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 the
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 following
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 * H1
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 [[cite:(119=E2=80=93136)johansson36:_minim= _formal]]
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 exports to
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 \begin{document}
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 \maketitle
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 \tableofcontents
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 \section{H1}
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 \label{sec-1}~\cite[119=E2=80=93136]{johan= sson36:_minim_formal}
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 % Emacs 24.4.50.2 (Org mode beta_8.3)
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 \end{document}
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 As expected.
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 I hope this helps,
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 Eric
>
>
>
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 --
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 Eric Schulte
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 https://cs.unm.edu/~eschulte
> =C2=A0 =C2=A0 =C2=A0 =C2=A0 PGP: 0x614CA05D (see https://u.fsf.org/yw)
>
>
>
>
>

--
-----------------------------------
John Kitchin
Professor
Doherty Hall A207F
Department of Chemical Engineering
Carnegie Mellon University
Pittsburgh, PA 15213
412-2= 68-7803
http://kitc= hingroup.cheme.cmu.edu


--047d7b5d65968b739004fff56dec--