From: Riccardo Romoli <ric.romoli@gmail.com>
To: Andreas Leha <andreas.leha@med.uni-goettingen.de>
Cc: emacs-orgmode@gnu.org
Subject: Re: org-babel export table from R to LaTeX
Date: Wed, 15 Feb 2012 12:00:18 +0100 [thread overview]
Message-ID: <CAHiM-bOwG1VHbKXHKHV9DJ=DE2-rtWbKrnGVi2bn=s1NSpQ+=w@mail.gmail.com> (raw)
In-Reply-To: <874nut2h4v.fsf@med.uni-goettingen.de>
[-- Attachment #1: Type: text/plain, Size: 4463 bytes --]
Thanks for your suggestion, I solved the problem using:
#+headers: :results output latex
#+begin_src R :session *R* :exports results
...
print(xtable(summary(mypca)))
#+end_src
Regards
Riccardo
2012/2/14 Andreas Leha <andreas.leha@med.uni-goettingen.de>
> Christophe Pouzat <christophe.pouzat@gmail.com> writes:
>
> > Sorry,
> >
> > Checking foo.org
> > (
> http://orgmode.org/w/?p=worg.git;a=blob_plain;f=org-contrib/babel/examples/foo.org;hb=HEAD
> )
> > I got the correct way to do it:
> >
> > #+begin_src R :results output latex :exports results
> > library(xtable)
> > xtable(foo, caption = "ANOVA Table", label = "tab:one",
> > digits = c(0, 0, 2, 0, 2, 3, 3))
> > #+end_src
> >
> > Does it solve your problem?
> >
> > Christophe
> >
> > Riccardo Romoli <ric.romoli@gmail.com> writes:
> >
> >> If I set :export latex when I exports to LaTeX I have only the R code,
> not the
> >> table.
> >>
> >> Best
> >>
> >> 2012/2/14 Christophe Pouzat <christophe.pouzat@gmail.com>
> >>
> >> Riccardo Romoli <ric.romoli@gmail.com> writes:
> >>
> >> > Hi, I work with org-babel and R.
> >> > In the R session I create a table that I have to export to LaTeX.
> >> > This is the code I use:
> >> >
> >> > #+headers: :results latex
> >> > #+begin_src R :session *R* :exports results
> >> > .....
> >> > print(xtable(summary(mypca)))
> >> > #+end_src
> >> >
> >> > I do not understand why the exported table is delimited by "|":
> >> >
> >> > |% latex table generated in R 2.14.1 by xtable 1.6-0 package |
> >> > | % Tue Feb 14 16:21:48 2012 |
> >> > | \begin{table}[ht] |
> >> > | \begin{center} |
> >> > | \begin{tabular}{rrrrrrrrrrrrrrrrr} |
> >> > | \hline |
> >> > | & PC1 & PC2 & PC3 & PC4 & PC5 & PC6 & PC7 & PC8 & PC9 &
> PC10 &
> >> > PC11 & PC12 & PC13 & PC14 & PC15 & PC16 \\ |
> >> > | \hline |
> >> > | Standard deviation & 3.4693 & 2.8113 & 2.5561 & 2.2668 &
> >> > 2.0015 & 1.9236 & 1.7287 & 1.6220 & 1.4288 & 1.3456 &
> 1.2596 &
> >> > 1.2195 & 1.1278 & 1.0778 & 0.8390 & 0.0000 \\ |
> >> > | Proportion of Variance & 0.2188 & 0.1437 & 0.1188 &
> 0.0934 &
> >> > 0.0728 & 0.0673 & 0.0543 & 0.0478 & 0.0371 & 0.0329 &
> 0.0289 &
> >> > 0.0270 & 0.0231 & 0.0211 & 0.0128 & 0.0000 \\ |
> >> > | Cumulative Proportion & 0.2188 & 0.3625 & 0.4813 & 0.5747
> &
> >> > 0.6476 & 0.7149 & 0.7692 & 0.8170 & 0.8541 & 0.8871 &
> 0.9159 &
> >> > 0.9429 & 0.9661 & 0.9872 & 1.0000 & 1.0000 \\ |
> >> > | \hline |
> >> > | \end{tabular} |
> >> > | \end{center} |
> >> > | \end{table} |
> >> > | |
> >> >
> >> > Should I change some headers settings??
> >> >
> >> > Best
> >> >
> >>
> >> Hi Riccardo,
> >>
> >> Try ":exports latex" instead of ":exports results"
> >>
> >> Christophe
> >> --
> >>
> >> Most people are not natural-born statisticians. Left to our own
> >> devices we are not very good at picking out patterns from a sea of
> >> noisy data. To put it another way, we are all too good at picking
> out
> >> non-existent patterns that happen to suit our purposes.
> >> Bradley Efron & Robert Tibshirani (1993) An Introduction to the
> Bootstrap
> >>
> >> --
> >>
> >> Christophe Pouzat
> >> MAP5 - Mathématiques Appliquées à Paris 5
> >> CNRS UMR 8145
> >> 45, rue des Saints-Pères
> >> 75006 PARIS
> >> France
> >>
> >> tel: +33142863828
> >> mobile: +33662941034
> >> web: http://www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
> >>
> >>
>
> Hi Riccardo,
>
> additionally, if you do not want to get too tightly bound to LaTeX, check
> out the ascii-package, e.g.
>
> #+begin_src R :results output org wrap :exports results
> library(ascii)
>
> ## from the lm help page:
> ctl <- c(4.17,5.58,5.18,6.11,4.50,4.61,5.17,4.53,5.33,5.14)
> trt <- c(4.81,4.17,4.41,3.59,5.87,3.83,6.03,4.89,4.32,4.69)
> group <- gl(2,10,20, labels=c("Ctl","Trt"))
> weight <- c(ctl, trt)
> lm.D9 <- lm(weight ~ group)
> lm.D90 <- lm(weight ~ group - 1) # omitting intercept
>
> print(ascii(anova(lm.D9)), type="org")
> #+end_src
>
>
> Cheers,
> Andreas
>
>
>
[-- Attachment #2: Type: text/html, Size: 6665 bytes --]
prev parent reply other threads:[~2012-02-15 11:00 UTC|newest]
Thread overview: 5+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-02-14 15:31 org-babel export table from R to LaTeX Riccardo Romoli
[not found] ` <87vcn99zv0.fsf@xtof-netbook.home>
2012-02-14 17:10 ` Riccardo Romoli
2012-02-14 17:25 ` Christophe Pouzat
2012-02-14 22:18 ` Andreas Leha
2012-02-15 11:00 ` Riccardo Romoli [this message]
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to='CAHiM-bOwG1VHbKXHKHV9DJ=DE2-rtWbKrnGVi2bn=s1NSpQ+=w@mail.gmail.com' \
--to=ric.romoli@gmail.com \
--cc=andreas.leha@med.uni-goettingen.de \
--cc=emacs-orgmode@gnu.org \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).