From mboxrd@z Thu Jan 1 00:00:00 1970 From: Rainer M Krug Subject: Status of changes - how to convert the following Date: Thu, 3 Nov 2011 11:39:45 +0100 Message-ID: Mime-Version: 1.0 Content-Type: multipart/alternative; boundary=0016e64bea3afa013404b0d234bb Return-path: Received: from eggs.gnu.org ([140.186.70.92]:59379) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1RLui5-0000do-Dx for emacs-orgmode@gnu.org; Thu, 03 Nov 2011 06:39:50 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1RLui3-0000LY-23 for emacs-orgmode@gnu.org; Thu, 03 Nov 2011 06:39:49 -0400 Received: from mail-qy0-f176.google.com ([209.85.216.176]:46287) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1RLui2-0000LO-UL for emacs-orgmode@gnu.org; Thu, 03 Nov 2011 06:39:47 -0400 Received: by qyk29 with SMTP id 29so1293042qyk.0 for ; Thu, 03 Nov 2011 03:39:46 -0700 (PDT) List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: emacs-orgmode --0016e64bea3afa013404b0d234bb Content-Type: text/plain; charset=ISO-8859-1 Hi Sorry - I mentioned it already, but I have lost track of how things are standing at the moment. I am using Org-mode version 7.7 (release_7.7.512.g4d2a), and get, based on the following arguments, after tangling, a file which begins with: ## [[file:~/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/Analysis_sensitivity.org::*Initialise%2520Analysis%2520(initializeAnalysis())][Initialise-Analysis-\(initializeAnalysis\(\)\):1]] RESULTSDIR <- "/media/Results/clusterResults/nsa/LHCube/nsa.91.up-to-date/results/" ANALYSISDIR <- "/home/rkrug/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/LHCube/nsa.91.up-to-date/analysis/" Shouldn't #+BABEL: be deprecated now? In that line: I have the following in my org file: #+TITLE: Analysis Sensitivity Analysis --- Analysis_sensitivity.org #+AUTHOR: Rainer M Krug #+EMAIL: Me@home.de #+DATE: 2010-09-14 Tue #+DESCRIPTION: #+KEYWORDS: :CONFIG: #+LANGUAGE: en #+DRAWERS: HIDDEN PROPERTIES STATE CONFIG BABEL OUTPUT LATEX #+OPTIONS: H:3 num:t toc:t \n:nil @:t ::t |:t ^:t -:t f:t *:t <:t #+OPTIONS: TeX:t LaTeX:t skip:nil d:nil todo:t pri:nil tags:not-in-toc #+INFOJS_OPT: view:nil toc:nil ltoc:t mouse:underline buttons:0 path: http://orgmode.org/org-info.js #+EXPORT_SELECT_TAGS: export #+EXPORT_EXCLUDE_TAGS: noexport #+LINK_UP: #+LINK_HOME: #+XSLT: #+ATTR_LaTeX: width=30em #+STARTUP: nohideblocks #+OPTIONS: ^:{} :END: :LATEX: #+LATEX_HEADER: \usepackage{rotfloat} #+LATEX_HEADER: \definecolor{light-gray}{gray}{0.9} #+LATEX_HEADER: \lstset{% #+LATEX_HEADER: basicstyle=\ttfamily\tiny, % the font that is used for the code #+LATEX_HEADER: tabsize=4, % sets default tabsize to 4 spaces #+LATEX_HEADER: numbers=left, % where to put the line numbers #+LATEX_HEADER: numberstyle=\tiny, % line number font size #+LATEX_HEADER: stepnumber=0, % step between two line numbers #+LATEX_HEADER: breaklines=true, %!! don't break long lines of code #+LATEX_HEADER: showtabs=false, % show tabs within strings adding particular underscores #+LATEX_HEADER: showspaces=false, % show spaces adding particular underscores #+LATEX_HEADER: showstringspaces=false, % underline spaces within strings #+LATEX_HEADER: keywordstyle=\color{blue}, #+LATEX_HEADER: identifierstyle=\color{black}, #+LATEX_HEADER: stringstyle=\color{green}, #+LATEX_HEADER: commentstyle=\color{red}, #+LATEX_HEADER: backgroundcolor=\color{light-gray}, % sets the background color #+LATEX_HEADER: columns=fullflexible, #+LATEX_HEADER: basewidth={0.5em,0.4em}, #+LATEX_HEADER: captionpos=b, % sets the caption position to `bottom' #+LATEX_HEADER: extendedchars=false %!?? workaround for when the listed file is in UTF-8 #+LATEX_HEADER: } #+LATEX_HEADER: \usepackage[landscape, top=1cm, bottom=1cm, left=1cm, right=1cm]{geometry} #+ATTR_LaTeX: width=10cm #+BIND: org-export-latex-image-default-option "width=0.35\\textwidth" :END: :BABEL: #+BABEL: :session *R* #+BABEL: :results output #+BABEL: :exports code #+BABEL: :comments yes #+BABEL: :tangle Analysis_sensitivity.R #+BABEL: :var RESULTSDIR="/media/Results/clusterResults/nsa/LHCube/nsa.91.up-to-date/results/" #+BABEL: :var ANALYSISDIR="/home/rkrug/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/LHCube/nsa.91.up-to-date/analysis/" #+BABEL: :var RESULTSDIR="/home/rkrug/sim/nsa/trunc/results/" #+BABEL: :var ANALYSISDIR="/home/rkrug/sim/nsa/SA/" :END: where the indented lines are "disabled". Assuming that #+BABEL is deprecated, how do I have to change it so that it is working? The lines with #+BABEL: are affected, and the single lines have to be changed to #+PROPERTY: - right? But what is about the :var statements, which are now in two lines, and which I would prefer to stay in separate lines? Thanks, Rainer -- Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Stellenbosch University South Africa Tel : +33 - (0)9 53 10 27 44 Cell: +33 - (0)6 85 62 59 98 Fax (F): +33 - (0)9 58 10 27 44 Fax (D): +49 - (0)3 21 21 25 22 44 email: Rainer@krugs.de Skype: RMkrug --0016e64bea3afa013404b0d234bb Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Hi

Sorry - I mentioned it already, but I have lost track of how thin= gs are standing at the moment.

I am using Org-mode version 7.7 (rele= ase_7.7.512.g4d2a), and get, based on the following arguments, after tangli= ng, a file which begins with:

=A0
## [[file:~/= Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia/trunc/R/Anal= ysis_sensitivity.org::*Initialise%2520Analysis%2520(initializeAnalysis())][= Initialise-Analysis-\(initializeAnalysis\(\)\):1]]

RESULTSDIR <- "/media/Results/clusterRes= ults/nsa/LHCube/nsa.91.up-to-date/results/"
ANALYSISDIR <- "= ;/home/rkrug/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia= /LHCube/nsa.91.up-to-date/analysis/"

Shouldn't #+BABEL: be deprecated now?

In that line:
=A0I have the following in my org file:

#+TITLE:=A0=A0=A0=A0 Analysis Sensitivity Analysis -= -- Analysis_sensitivity.org
#+AUTHOR:=A0=A0=A0 Rain= er M Krug
#+EMAIL:=A0=A0=A0=A0 Me@home.de
#+DATE:=A0=A0=A0=A0=A0 = 2010-09-14 Tue
#+DESCRIPTION:
#+KEYWORDS:

:C= ONFIG:
#+LANGUAGE:=A0 en
#+DRAWERS: HIDDEN PROPERTIES STATE CONFIG BABEL= OUTPUT LATEX

#+OPTIONS:=A0=A0 H:3 num:t toc:t \n:nil @:t ::t = |:t ^:t -:t f:t *:t <:t
#+OPTIONS:=A0=A0 TeX:t = LaTeX:t skip:nil d:nil todo:t pri:nil tags:not-in-toc
#+INFOJS_OPT: view:nil toc:nil ltoc:t mouse:underline buttons:0= path:http://orgmode.org/org-inf= o.js
#+EXPORT_SELECT_TAGS: e= xport
#+EXPORT_EXCLUDE_TAGS: noexport
#+LINK_UP:=A0=A0
#+LINK_HOME:
#+XSLT:
#+ATTR_LaTeX: width=3D30em
#+STARTUP: nohideblocks=
#+OPTIONS: ^:{}
:END:

:LATEX:=
#+LATEX_HEADER: \usepac= kage{rotfloat}
#+LATEX_HEADER: \definecolo= r{light-gray}{gray}{0.9}
#+LATEX_HEADER: \lstset= {%
#+LATEX_HEADER:=A0=A0=A0=A0 basicstyle= =3D\ttfamily\tiny,=A0=A0=A0=A0=A0=A0 % the font that is used for the code
#+LATEX_HEADER:=A0=A0= =A0=A0 tabsize=3D4,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0 % sets default tabsize to 4 spaces
#+LATEX_HEADER:=A0=A0=A0=A0 numbers=3Dleft,=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 % where to put the line numbers #+LATEX_HEADER:=A0=A0= =A0=A0 numberstyle=3D\tiny,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 % lin= e number font size
= #+LATEX_HEADER:=A0=A0= =A0=A0 stepnumber=3D0,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0 % step between two line numbers
#+LATEX_HEADER:=A0=A0= =A0=A0 breaklines=3Dtrue,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 %= !! don't break long lines of code
#+LA= TEX_HEADER:=A0=A0=A0=A0 showtabs=3Dfalse,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0 % show tabs within strings adding particular underscores=
#+LATEX_HEADER:=A0=A0= =A0=A0 showspaces=3Dfalse,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 % s= how spaces adding particular underscores
#= +LATEX_HEADER:=A0=A0=A0=A0 showstringspaces=3Dfalse,=A0=A0=A0=A0=A0=A0=A0= =A0=A0 % underline spaces within strings
#+LATEX_HEADER:=A0=A0= =A0=A0 keywordstyle=3D\color{blue},
#+LATE= X_HEADER:=A0=A0=A0=A0 identifierstyle=3D\color{black},
#+LATEX_HEADER:=A0=A0= =A0=A0 stringstyle=3D\color{green},
#+LATE= X_HEADER:=A0=A0=A0=A0 commentstyle=3D\color{red},
#+LATEX_HEADER:=A0=A0= =A0=A0 backgroundcolor=3D\color{light-gray},=A0=A0 % sets the background co= lor
#+LATEX_HEADER:=A0=A0=A0=A0 columns=3D= fullflexible,=A0
#+LATEX_HEADER:=A0=A0= =A0=A0 basewidth=3D{0.5em,0.4em},
#+LATEX= _HEADER:=A0=A0=A0=A0 captionpos=3Db,=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0 % sets the caption position to `bottom'
#+LATEX_HEADER:=A0=A0= =A0=A0 extendedchars=3Dfalse=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 %!?? wo= rkaround for when the listed file is in UTF-8
#+LATEX_HEADER: }

#+LATEX_HEADER: \usepackage[landscape, top=3D1cm= , bottom=3D1cm, left=3D1cm, right=3D1cm]{geometry}

#+ATTR_LaTeX: width=3D10cm

#+BIND: org-export-late= x-image-default-option "width=3D0.35\\textwidth"
:END:

:BABEL:
#+BABEL= : :session *R*
#+BABEL: :results outpu= t
#+BABEL: :exports code
#+BABEL: :comments yes<= /span>
#+BABEL: :tangle Analysis_sensitivity.R
#+BABEL: :var RESULTSDI= R=3D"/media/Results/clusterResults/nsa/LHCube/nsa.91.up-to-date/result= s/"
#+BABEL: :var ANALYSISDIR=3D"= ;/home/rkrug/Documents/Projects/BiocontrolAndAlienDynamics/nonSpatialAcacia= /LHCube/nsa.91.up-to-date/analysis/"
=A0#+BABEL: :var RESULT= SDIR=3D"/home/rkrug/sim/nsa/trunc/results/"
=A0#+BABEL: :var ANALYSISDIR=3D"/home/rkrug/sim/nsa/SA/&q= uot;
:END:

where the indented lines are &= quot;disabled".

Assuming that #+BABEL is deprecated, how do I h= ave to change it so that it is working? The lines with #+BABEL: are affecte= d, and the single lines have to be changed to #+PROPERTY: - right?

But what is about the :var statements, which are now in two lines, and = which I would prefer to stay in separate lines?

Thanks,

Raine= r
=A0

--
Rainer M. Krug, PhD (Conservation Ecol= ogy, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellence for Invasion Biology
Stellenbosch UniversitySouth Africa

Tel : =A0 =A0 =A0 +33 - (0)9 53 10 27 44
Cell: =A0 = =A0 =A0 +33 - (0)6 85 62 59 98
Fax (F): =A0 =A0 =A0 +33 - (0)9 58 10 27 = 44

Fax (D): =A0 =A0+49 - (0)3 21 21 25 22 44

email: =A0 =A0 =A0= Rainer@krugs.de

Skype: =A0 =A0 =A0RMkrug

--0016e64bea3afa013404b0d234bb--