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From: Greg Slodkowicz <gregs@ebi.ac.uk>
To: emacs-orgmode@gnu.org
Subject: R plots always exported to Rplots.pdf
Date: Wed, 22 May 2013 13:23:51 +0100	[thread overview]
Message-ID: <CAGY-8BJfgaDsAg9tgCehn+TRENXWcB0W7H1mFsJjE0eEJ1XOww@mail.gmail.com> (raw)

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Hi,
I'm trying to generate a report with R plots using org-mode but no matter
what header arguments are you the generated files are always called
Rplots.pdf

This is what my code block looks like:

#+NAME: pvals_waw
#+BEGIN_SRC R :file fig1.png :exports results
pvals = read.table("waw_data.txt", header=T)
plot(pvals$pvalue, pvals$length)
#+END_SRC

after evaluating the code block I get

#+RESULTS: pvals_waw
[[file:fig1.png]]

but I can see that the plot is in Rplots.pdf so subsequent attempt to
export Latex/PDF fail.  I'm using org 20130522 and R 3.0.

Best,
Greg


-- 
Greg Slodkowicz
PhD student, Nick Goldman group
EMBL-EBI

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next             reply	other threads:[~2013-05-22 12:23 UTC|newest]

Thread overview: 4+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2013-05-22 12:23 Greg Slodkowicz [this message]
2013-05-22 13:18 ` R plots always exported to Rplots.pdf Eric Schulte
2013-05-22 13:38 ` Jay Kerns
2013-05-22 14:21   ` Greg Slodkowicz

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