I set an agenda command to search for "DONE" todo items using "/DONE". This search works when selecting "t" from org-agenda, however when using a custom command with tags-todo it seems non active TODO keywords are excluded. Per the advanced searching page at http://orgmode.org/worg/org-tutorials/advanced-searching.html non active keywords should only be excluded when an exclamation point is used, ie. "/!DONE". Apologies if I'm misunderstanding something here. Emacs : GNU Emacs 25.1.1 (x86_64-w64-mingw32) of 2016-11-15 Package: Org mode version 9.0.5 (9.0.5-elpa @ c:/emacs/.emacs.d/elpa/org-20170210/) current state: ============== (setq org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand) org-speed-command-hook '(org-speed-command-default-hook org-babel-speed-command-hook) org-occur-hook '(org-first-headline-recenter) org-metaup-hook '(org-babel-load-in-session-maybe) org-confirm-shell-link-function 'yes-or-no-p org-agenda-custom-commands '(("d" "Done tasks" ((tags-todo "/DONE")))) org-after-todo-state-change-hook '(org-clock-out-if-current) org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer) org-agenda-before-write-hook '(org-agenda-add-entry-text) org-babel-pre-tangle-hook '(save-buffer) org-mode-hook '(#[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-show-block-all append local] 5] #[0 "\300\301\302\303\304$\207" [add-hook change-major-mode-hook org-babel-show-result-all append local] 5] org-babel-result-hide-spec org-babel-hide-all-hashes) org-archive-hook '(org-attach-archive-delete-maybe) org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers org-cycle-show-empty-lines org-optimize-window-after-visibility-change) org-confirm-elisp-link-function 'yes-or-no-p org-metadown-hook '(org-babel-pop-to-session-maybe) org-link-parameters '(("id" :follow org-id-open) ("rmail" :follow org-rmail-open :store org-rmail-store-link) ("mhe" :follow org-mhe-open :store org-mhe-store-link) ("irc" :follow org-irc-visit :store org-irc-store-link) ("info" :follow org-info-open :export org-info-export :store org-info-store-link) ("gnus" :follow org-gnus-open :store org-gnus-store-link) ("docview" :follow org-docview-open :export org-docview-export :store org-docview-store-link) ("bibtex" :follow org-bibtex-open :store org-bibtex-store-link) ("bbdb" :follow org-bbdb-open :export org-bbdb-export :complete org-bbdb-complete-link :store org-bbdb-store-link) ("w3m" :store org-w3m-store-link) ("file+sys") ("file+emacs") ("doi" :follow org--open-doi-link) ("elisp" :follow org--open-elisp-link) ("file" :complete org-file-complete-link) ("ftp" :follow (lambda (path) (browse-url (concat "ftp:" path)))) ("help" :follow org--open-help-link) ("http" :follow (lambda (path) (browse-url (concat "http:" path)))) ("https" :follow (lambda (path) (browse-url (concat "https:" path)))) ("mailto" :follow (lambda (path) (browse-url (concat "mailto:" path)))) ("message" :follow (lambda (path) (browse-url (concat "message:" path)))) ("news" :follow (lambda (path) (browse-url (concat "news:" path)))) ("shell" :follow org--open-shell-link)) org-agenda-files '("~/Documents/Org/test.org") org-clock-out-hook '(org-clock-remove-empty-clock-drawer) )