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From: John Hendy <jw.hendy@gmail.com>
To: Eric Schulte <eric.schulte@gmx.com>
Cc: Achim Gratz <Stromeko@nexgo.de>,
	nicholas.dokos@hp.com, emacs-orgmode@gnu.org
Subject: Re: R and babel on Windows problem
Date: Fri, 6 Jul 2012 17:05:58 -0500	[thread overview]
Message-ID: <CA+M2ft_x7RYEnwTfqPDKtTjvLig4KnMsWqYF=kkPz6ufWD4rNQ@mail.gmail.com> (raw)
In-Reply-To: <87ipe091h7.fsf@gmx.com>

On Fri, Jul 6, 2012 at 1:41 PM, Eric Schulte <eric.schulte@gmx.com> wrote:
>>
>> Update: I'm on 64bit and just now realized there's another set of R
>> cmds in ../R-2.15.0/bin/x64/. This is what I needed.
>>
>> Now my problem is that using R along doesn't produce any output. With
>> the above modification, I get:
>>
>> ,---
>> | Fatal error: you must specify '--save', '--no-save' or '--vanilla'
>> `---
>>
>> I'm quite close! If I add --no-save, I get exported results but they
>> include all of the R preamble text from when it starts. Here's my
>> block for reference:
>>
>> #+begin_src R :results output org :exports results
>>
>> x <- c(1:10)
>> summary(x)
>>
>> #+end_src
>>
>
> The default value for org-babel-R-command is "R --slave --no-save", so
> maybe adding the "--slave" option to your command will remove the R
> preamble text.

Yes! It's now working. I checked out the output of just runing "R"
from the command line in Windows, but did not see the --slave option.
Adding these to my .emacs setup of =org-babel-R-command= has worked
and it is now exporting results as expected.

Thanks so much -- for the times I need to use Windows at work, it's
going to be a lot easier to work with exportable/executable code
blocks in org-mode.


Thanks again for the persistence,
John

>
> As for your path problems, the "~" looks like a likely culprit.  The
> command is passed to an equivalent of the `shell-command-on-region'
> function, which then uses a shell to run the command.  Maybe the shell
> it uses can't handle the tilde?
>
> Best,
>
> p.s., I'm jumping into this thread part way through and didn't read all
>       of the back-log, so I apologize if I'm repeating previous advice.
>
> --
> Eric Schulte
> http://cs.unm.edu/~eschulte

next prev parent reply	other threads:[~2012-07-06 22:06 UTC|newest]

Thread overview: 27+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2012-06-28 17:46 R and babel on Windows problem John Hendy
2012-06-29 14:59 ` Alexander Vorobiev
2012-06-29 15:24   ` John Hendy
2012-06-29 17:12     ` Alexander Vorobiev
2012-06-29 18:26 ` Achim Gratz
2012-06-29 19:31   ` John Hendy
2012-06-29 19:37     ` Nick Dokos
2012-06-29 20:00       ` John Hendy
2012-06-29 20:16         ` Nick Dokos
2012-07-02 20:15           ` John Hendy
2012-07-02 21:26             ` Nick Dokos
2012-07-02 21:47               ` John Hendy
2012-07-02 22:15                 ` Nick Dokos
2012-07-02 22:16                 ` John Hendy
2012-07-06 16:58                   ` John Hendy
2012-07-06 17:12                     ` Nick Dokos
2012-07-06 17:46                       ` John Hendy
2012-07-06 18:41                         ` Eric Schulte
2012-07-06 22:05                           ` John Hendy [this message]
2012-07-06 18:45                         ` Nick Dokos
2012-07-06 22:08                           ` John Hendy
2012-07-06 22:14                             ` John Hendy
2012-07-07  1:02                               ` Eric Schulte
2012-07-07  1:48                               ` Nick Dokos
2012-07-16  0:42                                 ` John Hendy
2012-06-30  5:13     ` Achim Gratz
2012-06-30 13:15       ` Eric Schulte

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