From mboxrd@z Thu Jan 1 00:00:00 1970 From: John Hendy Subject: Re: Using :results output org with new exporter exporting as verbatim with LaTeX Date: Sat, 23 Mar 2013 20:40:58 -0500 Message-ID: References: <871ub5rbgi.fsf@gmail.com> Mime-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Return-path: Received: from eggs.gnu.org ([208.118.235.92]:47229) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1UJZvi-0002hT-Ah for emacs-orgmode@gnu.org; Sat, 23 Mar 2013 21:41:04 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1UJZvg-0003WI-NS for emacs-orgmode@gnu.org; Sat, 23 Mar 2013 21:41:02 -0400 Received: from mail-la0-x22e.google.com ([2a00:1450:4010:c03::22e]:50808) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1UJZvg-0003WA-0e for emacs-orgmode@gnu.org; Sat, 23 Mar 2013 21:41:00 -0400 Received: by mail-la0-f46.google.com with SMTP id fq12so9459894lab.19 for ; Sat, 23 Mar 2013 18:40:59 -0700 (PDT) In-Reply-To: <871ub5rbgi.fsf@gmail.com> List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Eric Schulte Cc: emacs-orgmode On Sat, Mar 23, 2013 at 5:12 PM, Eric Schulte wrote: > John Hendy writes: > >> I have an org file with R src block that spits out some file names to >> embed. I don't think I need to reproduce the block for testing >> purposes, but the gist is that I use cat() to spit out some >> =#+begin_center= and =[[filename]]= stuff. >> >> R code block header: >> >> #+name: src-block-name >> #+begin_src R :session r :exports results :results output org >> >> >> I'm getting a results block like so: >> >> #+RESULTS: src-block-name >> #+BEGIN_SRC org >> >> [[./plots/filename1.pdf]] >> >> [[./plots/filename2.pdf]] >> >> [[./plots/filename3.pdf]] >> >> #+END_SRC >> >> I used this setup previously (and successfully) as described in this >> mailing list thread. That particular post described my near successful >> block, with the same sort of cat(paste()) commands I was using to >> output the filenames in [[filename.pdf]] orgmode syntax. The final >> success happened at the very end when Eric Schulte suggested I change >> from :results output raw to :results output org. >> - http://lists.gnu.org/archive/html/emacs-orgmode/2012-08/msg01222.html >> >> Hence, I started with :results output org this time, but it didn't >> work. It's being exported verbatim using =C-c C-e l p=. (Appears in >> \begin{verbatim} ... \end{verbatim} in the output .tex file) >> >> If I change to :results output raw, I simply get: >> >> #+results >> >> [[filename.pdf]] >> >> This exports correctly. >> >> If I change the :results output org #+results block to the following, >> it also works correctly: >> >> #+begin_org >> >> [[filename.pdf]] >> >> #+end_org >> >> From the ob-doc-R, it appears that orgmode export might be expecting >> #+begin_org, not #+begin_src org: >> - http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-R.html >> >> #+begin_quote >> The Org Mode source code block specifies :results org so the output is >> wrapped in #+BEGIN_ORG & #+END_ORG. This way, arbitrary output can be >> included and easily replaced on subsequent evaluations of the source >> code block. >> #+end_quote >> >> >> Let me know the current proper way to accomplish what I'm trying to do. >> >> >> >> Thanks, >> John >> > > Hi John, > > There has been some churn in results handling in the last year, in part > this is related to the new exporter. I think the following is the > current best approach. > > #+begin_src sh :results output wrap > cat < [[./plots/filename1.pdf]] > > [[./plots/filename2.pdf]] > > [[./plots/filename3.pdf]] > EOF > #+end_src > > #+RESULTS: > :RESULTS: > [[./plots/filename1.pdf]] > > [[./plots/filename2.pdf]] > > [[./plots/filename3.pdf]] > :END: > > I do feel bad that we had to add yet another results type (i.e. "wrap"), > but as I recall there were very good reasons for this decision and it > has made things cleaner on the implementation side. I'm fine with whatever, though I think ob-R-doc is in need of a refresher, since I don't particularly think raw vs. org (and now wrap, which is non-existent in formal documentation from what I've seen) is explained extremely well. I'd be happy to help, but I don't understand the differences myself. For example, in our previous discussion (from the thread linked in my original post), it seems like raw was the /gist/ of what I wanted, but raw didn't know how to replace org-specific syntax [[filename]] properly, so I needed org. I also can't find any references to =output wrap=. Tried googling =output wrap R orgmode babel= and then ="output wrap" R orgmode babel= to try to find some discussions on this. Thanks for letting me know, John > > Cheers, > > -- > Eric Schulte > http://cs.unm.edu/~eschulte