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From: "Berry, Charles" via "General discussions about Org-mode." <emacs-orgmode@gnu.org>
To: Greg Minshall <minshall@umich.edu>
Cc: "emacs-orgmode@gnu.org" <emacs-orgmode@gnu.org>
Subject: Re: org-in-org
Date: Sun, 7 Mar 2021 22:26:53 +0000	[thread overview]
Message-ID: <BA67E5F1-73D3-4E47-A8FA-0DBD4A035795@health.ucsd.edu> (raw)
In-Reply-To: <1775874.1615133649@apollo2.minshall.org>



> On Mar 7, 2021, at 8:14 AM, Greg Minshall <minshall@umich.edu> wrote:
> 
> Charles,
> 
> thanks.  any thing you'd like to add to the R-via-ESS/org-mode
> repository, that would be great.
> 
> in general, afaik, the contents of org-in-org buffers export okay.  at
> least plain ones.  would could like to have the embedded code blocks go
> through some pretty-printer, but currently i don't see that as an issue.
> 
> as i mentioned to Jeremie, an issue is getting the org-in-org block to
> do its export.  i don't know if creating a recursive "execute" function
> for org source blocks -- which would cause them (modulo :eval, :exports,
> etc.) to evaluate their source blocks -- might be useful.
> 

Sorry, I do not know what a  `recursive "execute" function' would be/do in this context.

---

You said to Jeremie:
 
"during export of the *outer* org document, it could cause
the inner org block(s) to be executed and their results revealed."

AFAICS, the document below does exactly that upon export and can be exported using a command line idiom with proper attention to init-file issues (and let binding `org-confirm-babel-evaluate' to nil if you want to run in batch mode). 

As an example, html export will create a document that displays a `<pre class="src src-org"...> block with the R src block named `readdata-code' and the `#+RESULTS: readdata-code' block in it. 

--8<---------------cut here---------------start------------->8---
#+begin_src emacs-lisp :exports results :results none
  (org-babel-map-executables nil 
    (let ((org-confirm-babel-evaluate nil))
      (org-edit-src-code)
      (org-babel-execute-buffer)
      (org-edit-src-exit)))
#+end_src


#+NAME: readdata-code
#+BEGIN_SRC org
  ,#+NAME: readdata-code
  ,#+BEGIN_SRC R :results output

  read.csv(text="a,b,c\n1,2,3\n4,5,6",header=T) -> mydata1

  summary(mydata1)
  ,#+END_SRC

#+END_SRC
--8<---------------cut here---------------end--------------->8---


If that isn't what is needed, maybe you can provide the desired output when exporting the above sans the emacs-lisp src block.


Best,
Chuck




  reply	other threads:[~2021-03-07 22:31 UTC|newest]

Thread overview: 11+ messages / expand[flat|nested]  mbox.gz  Atom feed  top
2021-02-23 14:24 org-in-org Greg Minshall
2021-02-23 19:46 ` org-in-org Berry, Charles via General discussions about Org-mode.
2021-03-07 16:14   ` org-in-org Greg Minshall
2021-03-07 22:26     ` Berry, Charles via General discussions about Org-mode. [this message]
2021-03-08  7:44       ` org-in-org Greg Minshall
2021-03-08 20:33         ` org-in-org Berry, Charles via General discussions about Org-mode.
2021-03-09  3:37           ` org-in-org Greg Minshall
2021-02-23 20:30 ` org-in-org Erik Iverson
2021-03-07 15:46   ` org-in-org Greg Minshall
2021-02-23 21:38 ` org-in-org Jeremie Juste
2021-03-07 16:06   ` org-in-org Greg Minshall

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