I am exporting a file stroke.org using the bibliography file stroke.bib in the same directory The citations are not being incorporated into the pdf file An example from stroke.log: LaTeX Warning: Citation `Drummond:2014aa' on page 2 undefined on input line 71. The header for stroke.org is: #+LATEX_CLASS: article #+BIBLIOGRAPHY: stroke vancouver option:-d My emacs is from MacPorts GNU Emacs 24.5.1 (x86_64-apple-darwin15.4.0, NS apple-appkit-1404.46) of 2016-05-01 on teneleven-slave.macports.org My .emacs file contains (setq org-latex-pdf-process '("latexmk -pdflatex='pdflatex -interaction nonstopmode' -pdf -bibtex -f %f")) Org-mode version 8.3.4 (8.3.4-93-g0d72c3-elpaplus (I updated it as suggested here http://orgmode.org/elpa.html but it made no difference) I’m using TexLive 2016 with fully up to date packages Here is the preamble from stroke.tex (no mention of the .bib file) % Created 2016-06-27 Mon 22:50 \documentclass[12pt]{article} \usepackage[utf8]{inputenc} .. \usepackage{wrapfig} \author{David Abernethy} \date{\today} \title{} \hypersetup{ pdfauthor={David Abernethy}, pdfcreator={Emacs 24.5.1 (Org mode 8.3.4)},..} \begin{document} My set up (Latex header in the .org file and .bib file with the .emacs entry) used to work for this file but I have probably updated emacs since. Can anyone see what is wrong? help much appreciated David