From mboxrd@z Thu Jan 1 00:00:00 1970 From: Sunny Srivastava Subject: Re: [org-babel-R] Help: In converting an .org file to pdf, do I need to re-run the R code even if I ran them previously? Date: Thu, 2 Dec 2010 14:22:09 -0500 Message-ID: References: Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="===============0213380566==" Return-path: Received: from [140.186.70.92] (port=36541 helo=eggs.gnu.org) by lists.gnu.org with esmtp (Exim 4.43) id 1POEjM-0007zE-1O for emacs-orgmode@gnu.org; Thu, 02 Dec 2010 14:22:13 -0500 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1POEjK-0001pn-EC for emacs-orgmode@gnu.org; Thu, 02 Dec 2010 14:22:11 -0500 Received: from mail-ew0-f41.google.com ([209.85.215.41]:34865) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1POEjK-0001pV-4V for emacs-orgmode@gnu.org; Thu, 02 Dec 2010 14:22:10 -0500 Received: by ewy27 with SMTP id 27so18273141ewy.0 for ; Thu, 02 Dec 2010 11:22:09 -0800 (PST) In-Reply-To: List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: "Thomas S. Dye" Cc: emacs-orgmode mailing list --===============0213380566== Content-Type: multipart/alternative; boundary=0015174becb28bd424049672567b --0015174becb28bd424049672567b Content-Type: text/plain; charset=ISO-8859-1 Thank you Thomas. On Thu, Dec 2, 2010 at 10:33 AM, Thomas S. Dye wrote: > Aloha Sunny, > > > On Dec 1, 2010, at 11:05 PM, Sunny Srivastava wrote: > > Hello Org-moders: >> >> I am trying to use org-mode, instead of Sweave, to write a report for a >> statistical analysis. During the process of writing, I prefer to export the >> org file to pdf to see the output (for sanity check). However, every time I >> do this, I get a question in minibuffer to choose if I want to "run the R >> code". I have three questions related to this: >> >> 1. Can I turn this feature off and let "org-babel-R" (sorry if this is >> something else) automatically choose YES if the code has not been run >> already and NO if the code has been already run. >> >> > This is the :cache header argument. The setting you want is :cache yes. > > > 2. Currently, if the code was run already, I choose NO. I am assuming this >> won't affect the results. Am I correct? (If I change something in the code I >> run it using C-c in org-mode before exporting it to pdf) >> >> 3. Is there a way to know which R code chunk is "org-babel-R" asking to >> run, when it asks the question about running the R code. >> >> > This behavior has changed relatively recently. I believe that with a recent > version, answering NO won't abandon the evaluation of subsequent code > blocks, and that the code block name is visible when the question is asked. > This is something I don't use, so you'd have to pull and see for yourself. > > For me, it is preferable to disable the query. To disable the query, I set > this: > > #+begin_src emacs-lisp :tangle yes > (setq org-confirm-babel-evaluate nil) > #+end_src > > hth, > Tom > >> I looked in the uses of org-babel-R webpage on worg, but could not see >> anything related to this. Sorry if I missed something or the query is too >> basic. >> >> Thank you. >> >> Regards, >> S. >> >> _______________________________________________ >> Emacs-orgmode mailing list >> Please use `Reply All' to send replies to the list. >> Emacs-orgmode@gnu.org >> http://lists.gnu.org/mailman/listinfo/emacs-orgmode >> > > --0015174becb28bd424049672567b Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable Thank you Thomas.=A0

On Thu, Dec 2, 2010 = at 10:33 AM, Thomas S. Dye <tsd@tsdye.com> wrote:
Aloha Sunny,


On Dec 1, 2010, at 11:05 PM, Sunny Srivastava wrote:

Hello Org-moders:

I am trying to use org-mode, instead of Sweave, to write a report for a sta= tistical analysis. During the process of writing, I prefer to export the or= g file to pdf to see the output (for sanity check). However, every time I d= o this, I get a question in minibuffer to choose if I want to "run the= R code". I have three questions related to this:

1. Can I turn this feature off and let "org-babel-R" (sorry if th= is is something else) automatically choose YES if the code has not been run= already and NO if the code has been already run.


This is the :cache header argument. =A0The setting you want is :cache yes.<= div class=3D"im">

2. Currently, if the code was run already, I choose NO. I am assuming this = won't affect the results. Am I correct? (If I change something in the c= ode I run it using C-c in org-mode before exporting it to pdf)

3. Is there a way to know which R code chunk is "org-babel-R" ask= ing to run, when it asks the question about running the R code.


This behavior has changed relatively recently. I believe that with a recent= version, answering NO won't abandon the evaluation of subsequent code = blocks, and that the code block name is visible when the question is asked.= =A0This is something I don't use, so you'd have to pull and see fo= r yourself.

For me, it is preferable to disable the query. =A0To disable the query, I s= et this:

#+begin_src emacs-lisp :tangle yes
=A0 (setq org-confirm-babel-evaluate nil)
#+end_src

hth,
Tom
I looked in the uses of org-babel-R webpage on worg, but could not see anyt= hing related to this. Sorry if I missed something or the query is too basic= .

Thank you.

Regards,
S.

_______________________________________________
Emacs-orgmode mailing list
Please use `Reply All' to send replies to the list.
Emacs-orgmode@gn= u.org
http://lists.gnu.org/mailman/listinfo/emacs-orgmode


--0015174becb28bd424049672567b-- --===============0213380566== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode --===============0213380566==--