From mboxrd@z Thu Jan 1 00:00:00 1970 From: Rainer M Krug Subject: Re: Re: [babel] Writing R-packages the org way? Date: Fri, 8 Oct 2010 17:41:31 +0200 Message-ID: References: <4CADD83B.4000602@ccbr.umn.edu> <8762xeniy6.fsf@stats.ox.ac.uk> <4CADE357.1090803@ccbr.umn.edu> <87pqvlncsk.fsf@stats.ox.ac.uk> <87fwwglwbi.fsf@stats.ox.ac.uk> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="===============1188649514==" Return-path: Received: from [140.186.70.92] (port=36237 helo=eggs.gnu.org) by lists.gnu.org with esmtp (Exim 4.43) id 1P4F4q-0007WI-Of for emacs-orgmode@gnu.org; Fri, 08 Oct 2010 11:42:05 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1P4F4e-0006dL-5q for emacs-orgmode@gnu.org; Fri, 08 Oct 2010 11:41:40 -0400 Received: from mail-qy0-f169.google.com ([209.85.216.169]:59683) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1P4F4d-0006dE-Uh for emacs-orgmode@gnu.org; Fri, 08 Oct 2010 11:41:32 -0400 Received: by qyk31 with SMTP id 31so115486qyk.0 for ; Fri, 08 Oct 2010 08:41:31 -0700 (PDT) In-Reply-To: List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Stephen Eglen Cc: emacs-orgmode@gnu.org --===============1188649514== Content-Type: multipart/alternative; boundary=20cf303b40f33ba9b304921cd88e --20cf303b40f33ba9b304921cd88e Content-Type: text/plain; charset=ISO-8859-1 On Fri, Oct 8, 2010 at 3:09 PM, Stephen Eglen wrote: > > > > Dan Davison writes: > > > Hi Chuck, > > > > I agree about making use of existing ESS tools and that a more > > traditional Org approach might be appropriate. > > this may be slightly off-topic, but another way of adding documentation > is to the 'roxygen' markup. > http://roxygen.org/ Actually not - I did not specify that I want to use .Rd . > > ESS has some support for editing roxygen comment chunks within ESS > buffers, > Yes - I looked into Roxygen some time ago, but in the context of org, I see it as not necessary to include the documentation in the source code block - when using #+begin_src Rd #+end_src and #+begin_src R #+end_src I can nicely separate these two on the code level - but in the org file, they are still literate programming. Cheers, Rainer > Stephen > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode > -- NEW GERMAN FAX NUMBER!!! Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology, UCT), Dipl. Phys. (Germany) Centre of Excellence for Invasion Biology Natural Sciences Building Office Suite 2039 Stellenbosch University Main Campus, Merriman Avenue Stellenbosch South Africa Cell: +27 - (0)83 9479 042 Fax: +27 - (0)86 516 2782 Fax: +49 - (0)321 2125 2244 email: Rainer@krugs.de Skype: RMkrug Google: R.M.Krug@gmail.com --20cf303b40f33ba9b304921cd88e Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable

On Fri, Oct 8, 2010 at 3:09 PM, Stephen = Eglen <S.J.Eglen@damtp.cam.ac.uk> wrote:



Dan Davison <davison@stats.ox.ac.uk> writes:

> Hi Chuck,
>
> I agree about making use of existing ESS tools and that a more
> traditional Org approach might be appropriate.=A0

this may be slightly off-topic, but another way of adding documentati= on
is to the 'roxygen' markup.
=A0http://roxygen.org/

Actually not - I did not specify that I = want to use .Rd .=A0



ESS has some support for editing roxygen comment chunks within ESS
buffers,
=A0
Yes - I looked into Roxyge= n some time ago, but in the context of org, I see it as not necessary to in= clude the documentation in the source code block - when using
#+begin_src Rd
#+end_src

and
<= br>
#+begin_src R
#+end_src

I = can nicely separate these two on the code level - but in the org file, they= are still literate programming.

Cheers,

Rainer


Stephen



--
NEW GERMAN = FAX NUMBER!!!

Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (= Conservation Biology, UCT), Dipl. Phys. (Germany)

Centre of Excellen= ce for Invasion Biology
Natural Sciences Building
Office Suite 2039
Stellenbosch UniversityMain Campus, Merriman Avenue
Stellenbosch
South Africa

Cell:= =A0 =A0 =A0 =A0 =A0=A0 +27 - (0)83 9479 042
Fax:=A0 =A0 =A0 =A0 =A0 =A0 = +27 - (0)86 516 2782
Fax:=A0 =A0 =A0 =A0 =A0 =A0 +49 - (0)321 2125 2244
email:=A0 =A0 =A0 =A0= =A0 Rainer@krugs.de

Skype:=A0 =A0 =A0 =A0 =A0 RMkrug
Google:=A0 =A0 =A0 =A0=A0 R.M.Krug@gmail.com=

--20cf303b40f33ba9b304921cd88e-- --===============1188649514== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline _______________________________________________ Emacs-orgmode mailing list Please use `Reply All' to send replies to the list. Emacs-orgmode@gnu.org http://lists.gnu.org/mailman/listinfo/emacs-orgmode --===============1188649514==--