From mboxrd@z Thu Jan 1 00:00:00 1970 From: David Hajage Subject: Re: Re: problem with babel and R Date: Wed, 18 Aug 2010 08:53:33 +0200 Message-ID: References: <87tymtnxzi.fsf@gmail.com> <1668ca$1pq4c@mail.curie.net> Mime-Version: 1.0 Content-Type: multipart/mixed; boundary="===============0533608954==" Return-path: Received: from [140.186.70.92] (port=54058 helo=eggs.gnu.org) by lists.gnu.org with esmtp (Exim 4.43) id 1OlcX7-0006kn-OE for emacs-orgmode@gnu.org; Wed, 18 Aug 2010 02:54:00 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.69) (envelope-from ) id 1OlcX4-0000XB-VY for emacs-orgmode@gnu.org; Wed, 18 Aug 2010 02:53:57 -0400 Received: from mail-fx0-f41.google.com ([209.85.161.41]:35629) by eggs.gnu.org with esmtp (Exim 4.69) (envelope-from ) id 1OlcX4-0000Wp-FO for emacs-orgmode@gnu.org; Wed, 18 Aug 2010 02:53:54 -0400 Received: by fxm3 with SMTP id 3so82323fxm.0 for ; Tue, 17 Aug 2010 23:53:53 -0700 (PDT) In-Reply-To: <1668ca$1pq4c@mail.curie.net> List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Eric Schulte Cc: emacs-orgmode@gnu.org --===============0533608954== Content-Type: multipart/alternative; boundary=001485f44f3a597cb4048e138750 --001485f44f3a597cb4048e138750 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable OK, I understand that using ":results org", the results is not altered, there is no post processing. But I don't want a post processing, I would like a way to tell babel where is the begining *and the end* of the output produces by a particular R source block. I think an "#+end_results: foo" at the end of the output could do the job. Then, the option "replace" could work in all situation, even if a blank line is inserted somewhere in the or= g output. No? David On Tue, Aug 17, 2010 at 17:15, Eric Schulte wrote: > Hi David, > > David Hajage writes: > > > Thank you very much for your answer. > > > > My pleasure > > > > > But when I run the following code directly into R, no extra lines is > >added > > by the ascii function: > >> library(ascii) > > Le chargement a n=E9cessit=E9 le package : proto > >> options(asciiType =3D "org") > >> ascii(head(esoph)) # no extra line > > | | agegp | alcgp | tobgp | ncases | ncontrols | > > |---+-------+-----------+----------+--------+-----------| > > | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | > > | 2 | 25-34 | 0-39g/day | 10-19 | 0.00 | 10.00 | > > | 3 | 25-34 | 0-39g/day | 20-29 | 0.00 | 6.00 | > > | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | > > | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | > > | 6 | 25-34 | 40-79 | 10-19 | 0.00 | 7.00 | > > > > ah, my fault, this isn't an ascii issue. > > > > > In fact, the solution was to run 'library(ascii)' in another source > block. > > When I run only this: > > > > Thanks for pointing this out, I see what's happening now. > > The :results output header argument (see [1] for information on header > arguments) informs Org-mode to collect all of the output of the source > code block. This means that when library(ascii) is run, an empty line > is collected and appended to the output. Removing the "output" header > argument should fix this issue. > > My I ask why you are using the ascii package for simple table output? > It seems to me that this would be much simpler using the pure Org-mode > solution I suggested in my previous email. > > > > > #+begin_src R :session *R* :results output org replace > > ascii(head(esoph)) > > #+end_src > > > > #+results: foo > > | | agegp | alcgp | tobgp | ncases | ncontrols | > > |---+-------+-----------+----------+--------+-----------| > > | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | > > | 2 | 25-34 | 0-39g/day | 10-19 | 0.00 | 10.00 | > > | 3 | 25-34 | 0-39g/day | 20-29 | 0.00 | 6.00 | > > | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | > > | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | > > | 6 | 25-34 | 40-79 | 10-19 | 0.00 | 7.00 | > > > > Everything is then OK. > > I have no idea why "library(ascii)..." generates an extra empty line in > the > > results. > > > > If I understand, the results is all the text directly under "#+results:= ", > > until the first empty line. But what happens if the result contains emp= ty > > lines? Here an example with ascii and Hmisc package: > > > > This is not quite right, see [2] for a discussion of results handling. > The "org" option to results is a special case in which no > post-processing of the results takes place, and the raw output is > inserted into the org-mode buffer. > > Under normal usage w/o this header argument, results are either tabular > or are textual. If tabular a single table can easily be recognized and > handled, if textual they are normally enclosed in a block (example, > html, latex, etc...), the block then allows for empty lines while still > making it clear where the results end. > > > > > >> library(ascii) > >> library(Hmisc) > >> ascii(describe(esoph[, 1:3])) > > #+CAPTION: esoph[, 1:3] > > - 3 Variable > > - 88 Observations > > > > *agegp* > > | n | missing | unique | > > | 88 | 0 | 6 | > > > > | | 25-34 | 35-44 | 45-54 | 55-64 | 65-74 | 75+ | > > | Frequency | 15 | 15 | 16 | 16 | 15 | 11 | > > | % | 17 | 17 | 18 | 18 | 17 | 12 | > > > > *alcgp* > > | n | missing | unique | > > | 88 | 0 | 4 | > > > > 0-39g/day (23, 26%), 40-79 (23, 26%), 80-119 (21, 24%), 120+ (21, 24%) > > > > *tobgp* > > | n | missing | unique | > > | 88 | 0 | 4 | > > > > 0-9g/day (24, 27%), 10-19 (24, 27%), 20-29 (20, 23%), 30+ (20, 23%) > > > > As you can see, describe() generate a description of my data, and ascii > > generate org-mode markup as result. The result contains empty rows. Sin= ce > > there is no special characters indicating the end of the results in > babel, > > replace option will not work in this case. Is there any workaround? > > > > When using ":results org" there is no workaround, as the explicit > purpose of this setting is for your results to be inserted directly into > the Org-mode buffer w/o any interpretation or alteration. > > > In general I would recommend keeping a 1-to-1 mapping between code > blocks and result items, which should resolve this issue. > > > > > Of course, ascii is not usefull in this case, but it can coerce into > > org-mode markup many other R objects (see my previous example and > > http://orgmode.org/worg/org-contrib/babel/examples/ascii.php) > > > > I see, that answers my question from above. Thanks > > Hope this helps -- Eric > > > > > David > > > > > > On Tue, Aug 17, 2010 at 15:57, Eric Schulte > wrote: > > > >> Hi David, > >> > >> It seems that the problem here is in the ascii package. It is inserti= ng > >> an empty line at the beginning of your table, so that the table is not > >> snugly sitting under the #+results foo tag, because of this the table > >> isn't seen as results and is not replaced -- if you delete that space > >> then re-run the code block you'll notice that the table is replaced. > >> > >> Org-mode is very capable of inserting tabular data into Org-mode > >> documents without using the ascii package. For example the following > >> would be a more idiomatic example of using Org-mode to create a table > >> from R code. > >> > >> --8<---------------cut here---------------start------------->8--- > >> #+begin_src R > >> numbers <- matrix(c(51,43,22,92,28,21,68,22,9),ncol=3D3,byrow=3DTRUE) > >> numbers > >> #+end_src > >> > >> #+results: > >> | 51 | 43 | 22 | > >> | 92 | 28 | 21 | > >> | 68 | 22 | 9 | > >> > >> #+begin_src R :colnames yes > >> numbers <- matrix(c(51,43,22,92,28,21,68,22,9),ncol=3D3,byrow=3DTRUE) > >> numbers > >> #+end_src > >> > >> #+results: > >> | V1 | V2 | V3 | > >> |----+----+----| > >> | 51 | 43 | 22 | > >> | 92 | 28 | 21 | > >> | 68 | 22 | 9 | > >> --8<---------------cut here---------------end--------------->8--- > >> > >> or applied to your example, the following code block should generate t= he > >> desired results. > >> > >> --8<---------------cut here---------------start------------->8--- > >> #+srcname: foo > >> #+begin_src R :session *R* > >> head(esoph) > >> #+end_src > >> --8<---------------cut here---------------end--------------->8--- > >> > >> One last small note: the "replace" argument to :results is normally th= e > >> default value, and doesn't need to be explicitly added (although I can > >> see why you would have added it in this case since it wasn't working a= s > >> expected). > >> > >> Cheers -- Eric > >> > >> David Hajage writes: > >> > >> > I tried the code with the last development version of org-mode: > >> > > >> > #+srcname: foo > >> > #+begin_src R :session *R* :results output org replace > >> > library(ascii) > >> > options(asciiType =3D "org") > >> > ascii(head(esoph)) > >> > #+end_src > >> > > >> > #+results: foo > >> > > >> > | | agegp | alcgp | tobgp | ncases | ncontrols | > >> > |---+-------+-----------+----------+--------+-----------| > >> > | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | > >> > | 2 | 25-34 | 0-39g/day | 10-19 | 0.00 | 10.00 | > >> > | 3 | 25-34 | 0-39g/day | 20-29 | 0.00 | 6.00 | > >> > | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | > >> > | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | > >> > | 6 | 25-34 | 40-79 | 10-19 | 0.00 | 7.00 | > >> > > >> > | | agegp | alcgp | tobgp | ncases | ncontrols | > >> > |---+-------+-----------+----------+--------+-----------| > >> > | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | > >> > | 2 | 25-34 | 0-39g/day | 10-19 | 0.00 | 10.00 | > >> > | 3 | 25-34 | 0-39g/day | 20-29 | 0.00 | 6.00 | > >> > | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | > >> > | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | > >> > | 6 | 25-34 | 40-79 | 10-19 | 0.00 | 7.00 | > >> > > >> > There is no more ">", but an extra space. > >> > But, the replace option doesn't work: results are still appended. I = am > >> not > >> > an org-mode guru (far, far away), but I think this is because when > output > >> is > >> > org, there is no indication about the "end" of the results. > >> > > >> > David > >> > > >> > > >> > On Tue, Aug 17, 2010 at 10:17, David Hajage > wrote: > >> > > >> >> Hello, > >> >> > >> >> I am trying to use babel with R. Here the code: > >> >> > >> >> #+srcname: foo > >> >> #+begin_src R :session *R* :results output org replace > >> >> library(ascii) > >> >> options(asciiType =3D "org") > >> >> ascii(head(esoph)) > >> >> #+end_src > >> >> > >> >> #+results: foo > >> >> > >> >> > | | agegp | alcgp | tobgp | ncases | ncontrols | > >> >> |---+-------+-----------+----------+--------+-----------| > >> >> | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | > >> >> | 2 | 25-34 | 0-39g/day | 10-19 | 0.00 | 10.00 | > >> >> | 3 | 25-34 | 0-39g/day | 20-29 | 0.00 | 6.00 | > >> >> | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | > >> >> | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | > >> >> | 6 | 25-34 | 40-79 | 10-19 | 0.00 | 7.00 | > >> >> > >> >> > | | agegp | alcgp | tobgp | ncases | ncontrols | > >> >> |---+-------+-----------+----------+--------+-----------| > >> >> | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 | 40.00 | > >> >> | 2 | 25-34 | 0-39g/day | 10-19 | 0.00 | 10.00 | > >> >> | 3 | 25-34 | 0-39g/day | 20-29 | 0.00 | 6.00 | > >> >> | 4 | 25-34 | 0-39g/day | 30+ | 0.00 | 5.00 | > >> >> | 5 | 25-34 | 40-79 | 0-9g/day | 0.00 | 27.00 | > >> >> | 6 | 25-34 | 40-79 | 10-19 | 0.00 | 7.00 | > >> >> > >> >> With org-mode 7.01g in emacs 23, there is two problems: > >> >> - an extra ">" is added in the first line while output is "org" > >> >> - when I run the code twice, the new results is appended, while I > have > >> the > >> >> option "replace". > >> >> > >> >> Is there any problem with my header? > >> >> > >> >> Thank you very much for your help. > >> >> David > >> >> > >> > _______________________________________________ > >> > Emacs-orgmode mailing list > >> > Please use `Reply All' to send replies to the list. > >> > Emacs-orgmode@gnu.org > >> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode > >> > > Footnotes: > [1] http://orgmode.org/manual/Header-arguments.html#Header-arguments > > [2] > http://orgmode.org/manual/Results-of-evaluation.html#Results-of-evaluatio= n > > > L'int=E9grit=E9 de ce message n'=E9tant pas assur=E9e sur Internet, l'Ins= titut > Curie ne peut =EAtre tenu responsable de son contenu. > Si vous n'=EAtes pas destinataire de ce message confidentiel, merci de le > d=E9truire et d'avertir imm=E9diatement l'exp=E9diteur. > Afin de contribuer au respect de l'environnement, merci de n'imprimer ce > mail qu'en cas de n=E9cessit=E9. > --001485f44f3a597cb4048e138750 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable OK= , I understand that using ":results org", the results is not alte= red, there is no post processing. But I don't want a post processing, I= would like a way to tell babel where is the begining *and the end* of the = output produces by a particular R source block. I think an "#+end_resu= lts: foo" at the end of the output could do the job. Then, the option = "replace" could work in all situation, even if a blank line is in= serted somewhere in the org output. No?
David


On Tue, Aug 17, 2010 at 17:15, Eric Schu= lte <schulte= .eric@gmail.com> wrote:
Hi David,

David Hajage <dhajage@gmail.com= > writes:

> Thank you very much for your answer.
>

My pleasure

>
> But when I run the following code directly into R, no extra lines is >added
> by the ascii function:
>> library(ascii)
> Le chargement a n=E9cessit=E9 le package : proto
>> options(asciiType =3D "org")
>> ascii(head(esoph)) # no extra line
> | =A0 | agegp | alcgp =A0 =A0 | tobgp =A0 =A0| ncases | ncontrols | > |---+-------+-----------+----------+--------+-----------|
> | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 =A0 | 40.00 =A0 =A0 |
> | 2 | 25-34 | 0-39g/day | 10-19 =A0 =A0| 0.00 =A0 | 10.00 =A0 =A0 | > | 3 | 25-34 | 0-39g/day | 20-29 =A0 =A0| 0.00 =A0 | 6.00 =A0 =A0 =A0|<= br> > | 4 | 25-34 | 0-39g/day | 30+ =A0 =A0 =A0| 0.00 =A0 | 5.00 =A0 =A0 =A0= |
> | 5 | 25-34 | 40-79 =A0 =A0 | 0-9g/day | 0.00 =A0 | 27.00 =A0 =A0 | > | 6 | 25-34 | 40-79 =A0 =A0 | 10-19 =A0 =A0| 0.00 =A0 | 7.00 =A0 =A0 = =A0|
>

ah, my fault, this isn't an ascii issue.

>
> In fact, the solution was to run 'library(= ascii)' in another source block.
> When I run only this:
>

Thanks for pointing this out, I see what's happ= ening now.

The :results output header argument (see [1] for information on header
arguments) informs Org-mode to collect all of the output of the source
code block. =A0This means that when library(ascii) is run, an empty line is collected and appended to the output. =A0Removing the "output"= header
argument should fix this issue.

My I ask why you are using the ascii package for simple table output?
It seems to me that this would be much simpler using the pure Org-mode
solution I suggested in my previous email.

>
> #+begin_src R :session *R* :results output org= replace
> =A0 ascii(head(esoph))
> #+end_src
>
> #+results: foo
> | =A0 | agegp | alcgp =A0 =A0 | =A0 =A0tobgp | ncases | ncontrols | > |---+-------+-----------+----------+--------+-----------|
> | 1 | 25-34 | 0-39g/day | 0-9g/day | =A0 0.00 | =A0 =A0 40.00 |
> | 2 | 25-34 | 0-39g/day | =A0 =A010-19 | =A0 0.00 | =A0 =A0 10.00 | > | 3 | 25-34 | 0-39g/day | =A0 =A020-29 | =A0 0.00 | =A0 =A0 =A06.00 |<= br> > | 4 | 25-34 | 0-39g/day | =A0 =A0 =A030+ | =A0 0.00 | =A0 =A0 =A05.00 = |
> | 5 | 25-34 | 40-79 =A0 =A0 | 0-9g/day | =A0 0.00 | =A0 =A0 27.00 | > | 6 | 25-34 | 40-79 =A0 =A0 | =A0 =A010-19 | =A0 0.00 | =A0 =A0 =A07.0= 0 |
>
> Everything is then OK.
> I have no idea why "library(ascii)..." generates an extra em= pty line in the
> results.
>
> If I understand, the results is all the text directly under "#+re= sults:",
> until the first empty line. But what happens if the result contains em= pty
> lines? Here an example with ascii and Hmisc package:
>

This is not quite right, see [2] for a discussion o= f results handling.
The "org" option to results is a special case in which no
post-processing of the results takes place, and the raw output is
inserted into the org-mode buffer.

Under normal usage w/o this header argument, results are either tabular
or are textual. =A0If tabular a single table can easily be recognized and handled, if textual they are normally enclosed in a block (example,
html, latex, etc...), the block then allows for empty lines while still
making it clear where the results end.
=A0

>
>> library(ascii)
>> library(Hmisc)
>> ascii(describe(esoph[, 1:3]))
> #+CAPTION: esoph[, 1:3]
> - 3 Variable
> - 88 Observations
>
> *agegp*
> | n =A0| missing | unique |
> | 88 | 0 =A0 =A0 =A0 | 6 =A0 =A0 =A0|
>
> | =A0 =A0 =A0 =A0 =A0 | 25-34 | 35-44 | 45-54 | 55-64 | 65-74 | 75+ |<= br> > | Frequency | 15 =A0 =A0| 15 =A0 =A0| 16 =A0 =A0| 16 =A0 =A0| 15 =A0 = =A0| 11 =A0|
> | % =A0 =A0 =A0 =A0 | 17 =A0 =A0| 17 =A0 =A0| 18 =A0 =A0| 18 =A0 =A0| = 17 =A0 =A0| 12 =A0|
>
> *alcgp*
> | n =A0| missing | unique |
> | 88 | 0 =A0 =A0 =A0 | 4 =A0 =A0 =A0|
>
> =A00-39g/day (23, 26%), 40-79 (23, 26%), 80-119 (21, 24%), 120+ (21, 2= 4%)
>
> *tobgp*
> | n =A0| missing | unique |
> | 88 | 0 =A0 =A0 =A0 | 4 =A0 =A0 =A0|
>
> =A00-9g/day (24, 27%), 10-19 (24, 27%), 20-29 (20, 23%), 30+ (20, 23%)=
>
> As you can see, describe() generate a descript= ion of my data, and ascii
> generate org-mode markup as result. The result contains empty rows. Si= nce
> there is no special characters indicating the end of the results in ba= bel,
> replace option will not work in this case. Is there any workaround? >

When using ":results org" there is no wor= karound, as the explicit
purpose of this setting is for your results to be inserted directly into the Org-mode buffer w/o any interpretation or alteration.
=A0

In general I would recommend keeping a 1-to-1 mapping between code
blocks and result items, which should resolve this issue.

>
> Of course, ascii is not usefull in this case, = but it can coerce into
> org-mode markup many other R objects (see my previous example and
> http://orgmode.org/worg/org-contrib/babel/examples/asc= ii.php)
>

I see, that answers my question from above. Thanks<= br>
Hope this helps -- Eric

>
> David
>
>
> On Tue, Aug 17, 2010 at 15:57, Eric Schulte <schulte.eric@gmail.com> wrote:
>
>> Hi David,
>>
>> It seems that the problem here is in the ascii package. =A0It is i= nserting
>> an empty line at the beginning of your table, so that the table is= not
>> snugly sitting under the #+results foo tag, because of this the ta= ble
>> isn't seen as results and is not replaced -- if you delete tha= t space
>> then re-run the code block you'll notice that the table is rep= laced.
>>
>> Org-mode is very capable of inserting tabular data into Org-mode >> documents without using the ascii package. =A0For example the foll= owing
>> would be a more idiomatic example of using Org-mode to create a ta= ble
>> from R code.
>>
>> --8<---------------cut here---------------start------------->= ;8---
>> #+begin_src R
>> =A0numbers <- matrix(c(51,43,22,92,28,21,68,22,9),ncol=3D3,byro= w=3DTRUE)
>> =A0numbers
>> #+end_src
>>
>> #+results:
>> | 51 | 43 | 22 |
>> | 92 | 28 | 21 |
>> | 68 | 22 | =A09 |
>>
>> #+begin_src R :colnames yes
>> =A0numbers <- matrix(c(51,43,22,92,28,21,68,22,9),ncol=3D3,byro= w=3DTRUE)
>> =A0numbers
>> #+end_src
>>
>> #+results:
>> | V1 | V2 | V3 |
>> |----+----+----|
>> | 51 | 43 | 22 |
>> | 92 | 28 | 21 |
>> | 68 | 22 | =A09 |
>> --8<---------------cut here---------------end--------------->= ;8---
>>
>> or applied to your example, the following code block should genera= te the
>> desired results.
>>
>> --8<---------------cut here---------------start------------->= ;8---
>> #+srcname: foo
>> #+begin_src R :session *R*
>> =A0 head(esoph)
>> #+end_src
>> --8<---------------cut here---------------end--------------->= ;8---
>>
>> One last small note: the "replace" argument to :results = is normally the
>> default value, and doesn't need to be explicitly added (althou= gh I can
>> see why you would have added it in this case since it wasn't w= orking as
>> expected).
>>
>> Cheers -- Eric
>>
>> David Hajage <dhajage@gmai= l.com> writes:
>>
>> > I tried the code with the last development version of org-mod= e:
>> >
>> > #+srcname: foo
>> > #+begin_src R :session *R* :results output org replace
>> > =A0 library(ascii)
>> > =A0 options(asciiType =3D "org")
>> > =A0 ascii(head(esoph))
>> > #+end_src
>> >
>> > #+results: foo
>> >
>> > =A0| =A0 | agegp | alcgp =A0 =A0 | tobgp =A0 =A0| ncases | nc= ontrols |
>> > |---+-------+-----------+----------+--------+-----------|
>> > | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 =A0 | 40.00 =A0 =A0= |
>> > | 2 | 25-34 | 0-39g/day | 10-19 =A0 =A0| 0.00 =A0 | 10.00 =A0= =A0 |
>> > | 3 | 25-34 | 0-39g/day | 20-29 =A0 =A0| 0.00 =A0 | 6.00 =A0 = =A0 =A0|
>> > | 4 | 25-34 | 0-39g/day | 30+ =A0 =A0 =A0| 0.00 =A0 | 5.00 = =A0 =A0 =A0|
>> > | 5 | 25-34 | 40-79 =A0 =A0 | 0-9g/day | 0.00 =A0 | 27.00 =A0= =A0 |
>> > | 6 | 25-34 | 40-79 =A0 =A0 | 10-19 =A0 =A0| 0.00 =A0 | 7.00 = =A0 =A0 =A0|
>> >
>> > =A0| =A0 | agegp | alcgp =A0 =A0 | tobgp =A0 =A0| ncases | nc= ontrols |
>> > |---+-------+-----------+----------+--------+-----------|
>> > | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 =A0 | 40.00 =A0 =A0= |
>> > | 2 | 25-34 | 0-39g/day | 10-19 =A0 =A0| 0.00 =A0 | 10.00 =A0= =A0 |
>> > | 3 | 25-34 | 0-39g/day | 20-29 =A0 =A0| 0.00 =A0 | 6.00 =A0 = =A0 =A0|
>> > | 4 | 25-34 | 0-39g/day | 30+ =A0 =A0 =A0| 0.00 =A0 | 5.00 = =A0 =A0 =A0|
>> > | 5 | 25-34 | 40-79 =A0 =A0 | 0-9g/day | 0.00 =A0 | 27.00 =A0= =A0 |
>> > | 6 | 25-34 | 40-79 =A0 =A0 | 10-19 =A0 =A0| 0.00 =A0 | 7.00 = =A0 =A0 =A0|
>> >
>> > There is no more ">", but an extra space.
>> > But, the replace option doesn't work: results are still a= ppended. I am
>> not
>> > an org-mode guru (far, far away), but I think this is because= when output
>> is
>> > org, there is no indication about the "end" of the = results.
>> >
>> > David
>> >
>> >
>> > On Tue, Aug 17, 2010 at 10:17, David Hajage <dhajage@gmail.com> wrote:
>> >
>> >> Hello,
>> >>
>> >> I am trying to use babel with R. Here the code:
>> >>
>> >> #+srcname: foo
>> >> #+begin_src R :session *R* :results output org replace >> >> =A0 library(ascii)
>> >> =A0 options(asciiType =3D "org")
>> >> =A0 ascii(head(esoph))
>> >> #+end_src
>> >>
>> >> #+results: foo
>> >>
>> >> > | =A0 | agegp | alcgp =A0 =A0 | tobgp =A0 =A0| ncase= s | ncontrols |
>> >> |---+-------+-----------+----------+--------+-----------|=
>> >> | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 =A0 | 40.00 =A0= =A0 |
>> >> | 2 | 25-34 | 0-39g/day | 10-19 =A0 =A0| 0.00 =A0 | 10.00= =A0 =A0 |
>> >> | 3 | 25-34 | 0-39g/day | 20-29 =A0 =A0| 0.00 =A0 | 6.00 = =A0 =A0 =A0|
>> >> | 4 | 25-34 | 0-39g/day | 30+ =A0 =A0 =A0| 0.00 =A0 | 5.0= 0 =A0 =A0 =A0|
>> >> | 5 | 25-34 | 40-79 =A0 =A0 | 0-9g/day | 0.00 =A0 | 27.00= =A0 =A0 |
>> >> | 6 | 25-34 | 40-79 =A0 =A0 | 10-19 =A0 =A0| 0.00 =A0 | 7= .00 =A0 =A0 =A0|
>> >>
>> >> > | =A0 | agegp | alcgp =A0 =A0 | tobgp =A0 =A0| ncase= s | ncontrols |
>> >> |---+-------+-----------+----------+--------+-----------|=
>> >> | 1 | 25-34 | 0-39g/day | 0-9g/day | 0.00 =A0 | 40.00 =A0= =A0 |
>> >> | 2 | 25-34 | 0-39g/day | 10-19 =A0 =A0| 0.00 =A0 | 10.00= =A0 =A0 |
>> >> | 3 | 25-34 | 0-39g/day | 20-29 =A0 =A0| 0.00 =A0 | 6.00 = =A0 =A0 =A0|
>> >> | 4 | 25-34 | 0-39g/day | 30+ =A0 =A0 =A0| 0.00 =A0 | 5.0= 0 =A0 =A0 =A0|
>> >> | 5 | 25-34 | 40-79 =A0 =A0 | 0-9g/day | 0.00 =A0 | 27.00= =A0 =A0 |
>> >> | 6 | 25-34 | 40-79 =A0 =A0 | 10-19 =A0 =A0| 0.00 =A0 | 7= .00 =A0 =A0 =A0|
>> >>
>> >> With org-mode 7.01g in emacs 23, there is two problems: >> >> =A0- an extra ">" is added in the first line= while output is "org"
>> >> =A0- when I run the code twice, the new results is append= ed, while I have
>> the
>> >> option "replace".
>> >>
>> >> Is there any problem with my header?
>> >>
>> >> Thank you very much for your help.
>> >> David
>> >>
>> > _______________________________________________
>> > Emacs-orgmode mailing list
>> > Please use `Reply All' to send replies to the list.
>> > Emacs-orgmode@gnu.or= g
>> > http://lists.gnu.org/mailman/listinfo/emacs-orgmode
>>

Footnotes:
[1] =A0http://orgmode.org/manual/Header-arguments.html#= Header-arguments

[2] =A0http://orgmode.org/manual/Results-of-e= valuation.html#Results-of-evaluation


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Si vous n'=EAtes pas destinataire de ce message confidentiel, merci de = le d=E9truire et d'avertir imm=E9diatement l'exp=E9diteur.
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