Hi I have the following src block #+begin_src matlab :results output raw :exports code :eval never-export addpath /home/oub/ALLES/HGs/Matlab-init/Statistic sens=0.7; spec=0.95; aspec=1-spec; prob=0.1; sal=1-prob; [bp,bpinv,bn,bninv]=mibayes(sens,spec,prob); disp('\begin{align*}') disp('P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\') fprintf('P(\\text{No-Covid19}) &= 1- P(\\text{Covid19}) = 1-%g=%g\\\\ \n',prob,sal) fprintf('P(\\text{+}|\\text{No-Covid19}) &= 1- P(\\text{-}|\\text{No-Covid19}) = 1-%g=%g \\\\ \n',spec,aspec) fprintf('&=\\frac{%g \\cdot %g}{%g\\cdot%g + (1-%g)\\cdot %g}\\\\ \n',spec,prob,spec,prob,spec,sal) fprintf('P(\\text{Covid19}|-)&=%g \\\\ \n', bp); fprintf('P(\\text{No-Covid19}|+)&=1-P(\\text{Covid19}|+)=%g \\\\ \n', bpinv); disp('\end{align*}') #+end_src That is exported to #+RESULTS: \begin{align*} P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\ P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\ P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\ &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\ P(\text{Covid19}|-)&=0.000139982 \\ P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.99986 \\ \end{align*} Now in my org mode file, the lines between the + \text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\ Get a overstrike. How can I avoid that? Thanks and regards Uwe Brauer
Uwe,
> On May 15, 2021, at 6:31 AM, Uwe Brauer <oub@mat.ucm.es> wrote:
>
>
> Hi
>
> I have the following src block
>
> #+begin_src matlab :results output raw :exports code :eval never-export
> addpath /home/oub/ALLES/HGs/Matlab-init/Statistic
> sens=0.7;
> spec=0.95;
> aspec=1-spec;
> prob=0.1;
> sal=1-prob;
> [bp,bpinv,bn,bninv]=mibayes(sens,spec,prob);
> disp('\begin{align*}')
> disp('P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\')
> fprintf('P(\\text{No-Covid19}) &= 1- P(\\text{Covid19}) = 1-%g=%g\\\\ \n',prob,sal)
> fprintf('P(\\text{+}|\\text{No-Covid19}) &= 1- P(\\text{-}|\\text{No-Covid19}) = 1-%g=%g \\\\ \n',spec,aspec)
> fprintf('&=\\frac{%g \\cdot %g}{%g\\cdot%g + (1-%g)\\cdot %g}\\\\ \n',spec,prob,spec,prob,spec,sal)
> fprintf('P(\\text{Covid19}|-)&=%g \\\\ \n', bp);
> fprintf('P(\\text{No-Covid19}|+)&=1-P(\\text{Covid19}|+)=%g \\\\ \n', bpinv);
> disp('\end{align*}')
> #+end_src
>
> That is exported to
> #+RESULTS:
> \begin{align*}
> P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\
> P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\
> P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\
> &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\
> P(\text{Covid19}|-)&=0.000139982 \\
> P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.99986 \\
> \end{align*}
>
> Now in my org mode file, the lines between the +
>
> \text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\
>
> Get a overstrike.
>
> How can I avoid that?
Customize `org-src-lang-modes' adding ` ("matlab" . octave)'.
HTH,
Chuck
[-- Attachment #1.1: Type: text/plain, Size: 2824 bytes --] >>> "BC" == Berry, Charles <ccberry@health.ucsd.edu> writes: > Uwe, >> On May 15, 2021, at 6:31 AM, Uwe Brauer <oub@mat.ucm.es> wrote: >> >> >> Hi >> >> I have the following src block >> >> #+begin_src matlab :results output raw :exports code :eval never-export >> addpath /home/oub/ALLES/HGs/Matlab-init/Statistic >> sens=0.7; >> spec=0.95; >> aspec=1-spec; >> prob=0.1; >> sal=1-prob; >> [bp,bpinv,bn,bninv]=mibayes(sens,spec,prob); >> disp('\begin{align*}') >> disp('P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\') >> fprintf('P(\\text{No-Covid19}) &= 1- P(\\text{Covid19}) = 1-%g=%g\\\\ \n',prob,sal) >> fprintf('P(\\text{+}|\\text{No-Covid19}) &= 1- P(\\text{-}|\\text{No-Covid19}) = 1-%g=%g \\\\ \n',spec,aspec) >> fprintf('&=\\frac{%g \\cdot %g}{%g\\cdot%g + (1-%g)\\cdot %g}\\\\ \n',spec,prob,spec,prob,spec,sal) >> fprintf('P(\\text{Covid19}|-)&=%g \\\\ \n', bp); >> fprintf('P(\\text{No-Covid19}|+)&=1-P(\\text{Covid19}|+)=%g \\\\ \n', bpinv); >> disp('\end{align*}') >> #+end_src >> >> That is exported to >> #+RESULTS: >> \begin{align*} >> P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\ >> P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\ >> P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\ >> &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\ >> P(\text{Covid19}|-)&=0.000139982 \\ >> P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.99986 \\ >> \end{align*} >> >> Now in my org mode file, the lines between the + >> >> \text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\ >> >> Get a overstrike. >> >> How can I avoid that? > Customize `org-src-lang-modes' adding ` ("matlab" . octave)'. Thanks, it did not help. To make this clear the problem occurs in the result block, not in the source block. That is exported to #+RESULTS: \begin{align*} P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\ P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\ P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\ &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\ P(\text{Covid19}|-)&=0.000139982 \\ P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.99986 \\ \end{align*} I attach a screenshot just in case Uwe [-- Attachment #1.2: org-src.png --] [-- Type: image/png, Size: 247913 bytes --] [-- Attachment #2: smime.p7s --] [-- Type: application/pkcs7-signature, Size: 5673 bytes --]
Uwe,
[snip]
> On May 15, 2021, at 11:10 AM, Uwe Brauer <oub@mat.ucm.es> wrote:
>
> Thanks, it did not help. To make this clear the problem occurs in the
> result block, not in the source block.
>
>
>
> That is exported to
> #+RESULTS:
> \begin{align*}
> P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\
> P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\
> P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\
> &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\
> P(\text{Covid19}|-)&=0.000139982 \\
> P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.99986 \\
> \end{align*}
>
>
> I attach a screenshot just in case
>
> Uwe
[screenshot deleted]
Oh, I misunderstood.
The result looks like latex. So why not use `:results output latex' ?
HTH,
Chuck
[-- Attachment #1: Type: text/plain, Size: 1000 bytes --] Chuck, > Uwe, > [snip] > [screenshot deleted] > Oh, I misunderstood. > The result looks like latex. So why not use `:results output latex' ? I tried that also, then however the result is #+RESULTS: #+begin_export latex \begin{align*} P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\ P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\ P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\ &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\ P(\text{Covid19}|-)&=0.608696 \\ P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.391304 \\ \end{align*} #+end_export That is ok for displaying, but if I now want also to export this org file to latex, the align construct is not exported, sigh. As the great philosopher M. Jagger said: «You Can't Always Get What You Want» [-- Attachment #2: smime.p7s --] [-- Type: application/pkcs7-signature, Size: 5673 bytes --]
Uwe,
You used `:exports code :eval never-export' (from an earlier posting).
I think you want `:exports both :eval never-export' to keep babel from removing the results.
HTH,
Chuck
> On May 15, 2021, at 1:18 PM, Uwe Brauer <oub@mat.ucm.es> wrote:
>
> Chuck,
>> Uwe,
>> [snip]
>
>
>> [screenshot deleted]
>
>> Oh, I misunderstood.
>
>> The result looks like latex. So why not use `:results output latex' ?
>
> I tried that also, then however the result is
> #+RESULTS:
> #+begin_export latex
> \begin{align*}
> P(\text{Covid19}|\text{+})&=\frac{P(\text{+}|\text{Covid19})P(\text{Covid19})}{P(\text{+}|\text{Covid19})P(\text{Covid19})+P(\text{+}|\text{No-Covid19})P(\text{No-Covid19})}\\
> P(\text{No-Covid19}) &= 1- P(\text{Covid19}) = 1-0.1=0.9\\
> P(\text{+}|\text{No-Covid19}) &= 1- P(\text{-}|\text{No-Covid19}) = 1-0.95=0.05 \\
> &=\frac{0.95 \cdot 0.1}{0.95\cdot0.1 + (1-0.95)\cdot 0.9}\\
> P(\text{Covid19}|-)&=0.608696 \\
> P(\text{No-Covid19}|+)&=1-P(\text{Covid19}|+)=0.391304 \\
> \end{align*}
> #+end_export
>
> That is ok for displaying, but if I now want also to export this org
> file to latex, the align construct is not exported, sigh.
>
> As the great philosopher M. Jagger said:
>
> «You Can't Always Get What You Want»
[-- Attachment #1: Type: text/plain, Size: 319 bytes --] >>> "BC" == Berry, Charles <ccberry@health.ucsd.edu> writes: Chuck > Uwe, > You used `:exports code :eval never-export' (from an earlier posting). > I think you want `:exports both :eval never-export' to keep babel from removing the results. Thanks very much, that was the essential bit of code. Solved! [-- Attachment #2: smime.p7s --] [-- Type: application/pkcs7-signature, Size: 5673 bytes --]