From mboxrd@z Thu Jan 1 00:00:00 1970 From: "Eric Schulte" Subject: Re: [babel] possible bug in org-babel-execute-buffer? Date: Wed, 26 May 2010 19:45:25 -0600 Message-ID: <87y6f6dsne.fsf@gmail.com> References: <4BFDB5CE.3010600@ccbr.umn.edu> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Return-path: Received: from [140.186.70.92] (port=45094 helo=eggs.gnu.org) by lists.gnu.org with esmtp (Exim 4.43) id 1OHSBB-0008Mx-BL for emacs-orgmode@gnu.org; Wed, 26 May 2010 21:48:11 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.69) (envelope-from ) id 1OHSA6-0007QT-Ko for emacs-orgmode@gnu.org; Wed, 26 May 2010 21:45:31 -0400 Received: from mail-pv0-f169.google.com ([74.125.83.169]:46475) by eggs.gnu.org with esmtp (Exim 4.69) (envelope-from ) id 1OHSA6-0007QF-GM for emacs-orgmode@gnu.org; Wed, 26 May 2010 21:45:30 -0400 Received: by pvf33 with SMTP id 33so5522294pvf.0 for ; Wed, 26 May 2010 18:45:28 -0700 (PDT) In-Reply-To: <4BFDB5CE.3010600@ccbr.umn.edu> (Erik Iverson's message of "Wed, 26 May 2010 18:59:10 -0500") List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Erik Iverson Cc: emacs-orgmode Hi Erik, Thanks for the report, this should now be fixed in the latest git HEAD, please let me know if the problem persists. Best -- Eric Erik Iverson writes: > Hello, > > I am using Emacs 23.1, orgmode pulled from git just an hour ago, but I > noticed the following issue on a version pulled about a week ago, too. > I don't know if it ever worked as I expect. These development > versions have C-c C-v as the babel prefix keys, so if you are using a > stable version, the following may be different. Also, all my examples > use R. > > I'm trying to use C-c C-v C-b to call org-babel-execute-buffer, which > is documented as: > > Call `org-babel-execute-src-block' on every source block in > the current buffer. > > However, what happens when this is called seems to depend on which > trees are visible in the buffer when it's called! > > Paste the following orgmode file into an org buffer, and make sure all > trees are fully collapsed, i.e., you just see the headlines "Big Block > 1" and "Big Block 2", and try C-c C-v C-b. > > After it's done executing, notice that only the *last* source blocks > of each tree were run. Now collapse everything again, and call > org-babel-execute-buffer again. The same thing happens, except now > there are *two* results present for those last code blocks. > > Now start all over again with the below code, so no results are > present. Expand all subtrees so everything is visible. Do C-c C-v > C-b, and all results are inserted as expected. Run the blocks a > second time with everything open, and every block still only has 1 > results section, as expected. This is how I would expect/hope the > function to work regardless of the hide/show states of the trees. > > So I think there are two possibly related problems when trees aren't > fully expanded: > > 1) Only the last source code block per hidden tree is getting run > 2) That last block will insert results multiple times if > org-babel-execute-buffer is called multiple times > > Thanks! > Erik > > =================== orgmode code follows below ====================== > > > * Big Block 1 > ** my first bit of code! > #+begin_src R > "from the first nested code block in Big Block 1" > #+end_src > ** and some more code! > #+begin_src R > "from the middle nested code block in Big Block 1" > #+end_src > ** and final code! > #+begin_src R > "from the final nested code block in Big Block 1" > #+end_src > * Big Block 2 > #+begin_src R > "from the only code block in Big Block 2" > #+end_src > > > > _______________________________________________ > Emacs-orgmode mailing list > Please use `Reply All' to send replies to the list. > Emacs-orgmode@gnu.org > http://lists.gnu.org/mailman/listinfo/emacs-orgmode