I'm having great difficulties in getting minitocs appearing in my chapters. This is my preamble -

--8<---------------cut here---------------start------------->8---
#+LaTeX_class: my-report
#+latex_header: \usepackage[a4paper,left=25mm,right=25mm,top=25mm,bottom=30mm,footskip=5mm,headsep=2mm]{geometry}
#+latex_header: \input{/home/boudiccas/research/hormones/hormones18/titlepage}
#+LATEX_CLASS_OPTIONS: [a4paper,11pt,oneside,openany,british,svgnames,dvipsnames]
#+latex_header: \usepackage[backend=biber,style=authoryear,doi=true,hyperref=true,backref=true,backrefstyle=two,date=year,maxcitenames=3]{biblatex}
#+LATEX_HEADER: \addbibresource{/home/boudiccas/research/hormones/hormones18/hormones18.bib}
#+latex_header: \input{/home/boudiccas/research/codebase}
#+latex_header: \makeindex[title=General Index,options=-s ./index.ist,columnseprule,intoc]
#+latex_header: \makeindex[name=horm,title=Index of Hormones,options=-s ./index.ist,columnseprule,intoc,columns=2]
#+latex_header: \makeindex[name=side,title=Index of Hormones Side-Effects,options=-s ./index.ist,columnseprule,intoc,columns=2]
#+latex_header: \makeindex[name=inter,title=Index of Interactions,options=-s ./index.ist,columnseprule,intoc,columns=2]
#+latex_header: \usepackage{bookmark,hyperref}
#+latex_header: \hypersetup{linktoc=all,colorlinks,linkcolor={red},citecolor={magenta},urlcolor={blue}}
#+latex_header: \usepackage[toc,nopostdot,style=listgroup]{glossaries}
#+latex_header: \input{hormones18.glos}
#+latex_header: \makeglossaries
#+latex_header: \glsenablehyper
#+latex_header: \renewcommand{\glstextformat}[1]{\underline{\color{red}\em #1}}
#+latex_header: \usepackage{todo}
#+latex_header: \usepackage[nostamp,firstpage]{draftwatermark}
#+LaTeX_header: \setcounter{secnumdepth}{1}
#+latex_header: \setcounter{tocdepth}{1}
#+latex_header: \usepackage{everypage}
#+latex_header: \usepackage{booktabs}
#+latex_header: \usepackage[mark]{gitinfo2}
#+latex_header: \usepackage{upgreek}
#+latex_header: \usepackage{pifont}
#+latex_header: \usepackage{textgreek}

#+latex_header: \usepackage{bookmark}
#+latex_header: \usepackage{color,soul,xcolor}
#+latex_header: \usepackage{caption}
#+latex_header: \setlength\parindent{0pt} % sets indent to zero
#+latex_header: \usepackage{chngcntr}
#+latex_header: \counterwithout{footnote}{chapter}
#+latex_header: \usepackage[Lenny]{fncychap} 
#+latex_header: \usepackage[toc]{multitoc}
#+latex_header: \usepackage{minibox}
#+latex_header: \renewcommand{\footnotesize}{\normalsize}
#+latex_header: \usepackage{morewrites}
#+latex_header: \usepackage{calc,tikz}                         
#+latex_header: \definecolor{ocre}{HTML}{F16723}
#+latex_header: \usepackage{imakeidx}
#+latex_header: \footnotesep\baselineskip
#+latex_header: \setlength{\parskip}{5pt}
#+latex_header: \usepackage{framed}
#+latex_header: \colorlet{shadecolor}{PaleTurquoise} %% use \begin{shaded}
#+latex_header: \usepackage[defaultlines=2,all]{nowidow}
#+latex_header: \sloppy
#+latex_header: \flushbottom
#+latex_header: \usepackage{url}
#+latex_header: \urlstyle{same} %%## 2017/01/30
#+latex_header: \usepackage[useregional,showdow]{datetime2}
#+latex_header: \usepackage{enumitem}
#+latex_header: \setlist{nolistsep}
#+latex_header: \setlist[itemize]{noitemsep}
#+latex_header: \setlist[enumerate]{noitemsep}
#+latex_header: \renewcommand*\glspostdescription{\dotfill} %%## for syn 2017/01/30
#+latex_header: \usepackage{array}
#+latex_header: \usepackage[framemethod=tikz]{mdframed}
#+latex_header: \usetikzlibrary{shadows}
#+latex_header: \definecolor{cccolor}{rgb}{.67,.7,.67}
#+latex_header: \usepackage{tcolorbox}
#+latex_header: \usepackage{float}

#+include: /home/boudiccas/research/header.org
#+latex_header: \usepackage{minitoc}


#+latex_header: \setlength{\parskip}{5pt} % gap between paragraphs
#+latex_header: \setlength{\parsep}{0pt} % space between paragraphs within an item
#+latex_header: \setlength{\topskip}{0pt} % between header and text
#+latex_header: \setlength{\topmargin}{0pt} % gap above header
#+latex_header: \setlength{\topsep}{0pt} % space between first item and preceding paragraph
#+latex_header: \setlength{\partopsep}{0pt} % extra space added to \topsep when environment starts a new paragraph
# # http://www-h.eng.cam.ac.uk/help/tpl/textprocessing/squeeze.html
#+latex_header: \linespread{0.9}
--8<---------------cut here---------------end--------------->8---

This is in an emacs org-mode file which is then exported to latex.
According to the 'hormones18.log' minitoc is being loaded, but in the
projects folder it only shows these files - 'hormones18.maf',
'hormones18.mtc', and 'hormones18.mtc0'.

What do I need please to persuade it to produce all the required
minitocs in the chapters?

Thanks
Sharon.
-- 
A taste of linux = http://www.sharons.org.uk
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Debian 9.0, fluxbox 1.3.5-2, emacs 25.1.1, org-mode 9.0.7