* [babel] speed of continued source blocks
@ 2011-12-10 23:30 Andreas Leha
2011-12-11 16:53 ` Eric Schulte
0 siblings, 1 reply; 5+ messages in thread
From: Andreas Leha @ 2011-12-10 23:30 UTC (permalink / raw)
To: emacs-orgmode
Hi all,
there is a significant performance drop connected to (the quite old) commit
8c37281cb63a0b5cb0d84d22960e3a33d7680d40
ob-tangle: continued code blocks now implemented with the :noweb-ref header arg
which introduces the continued code blocks.
On the test file ([fn:1] for the old syntax, [fn:2] for the new
syntax) do org-babel-expand-src-block (C-c C-v v) on
the first source code block to see the effect.
Just before this commit I get instantaneous reaction (elp: [fn:3]), with
the commit I have to wait about 20 seconds (elp: [fn:4])
Recently things improved a bit, but still it takes about 10 seconds
to expand the source block (elp: [fn:5]).
Since working interactively with the (R-)code in the org-file is
impossible this way, here comes my question:
Is it possible to either
(a) speed up the continued source blocks
or
(b) make the continued code blocks an optional feature
in order to improve the performance to the previous state again?
I'd be happy with solution (b), but unfortunately, it is beyond my
elisp to do so.
Any help highly appreciated,
Andreas
[fn:1] test file with old syntax: http://pastebin.com/aL9axJMJ
[fn:2] test file with new syntax: http://pastebin.com/c42jS1Be
[fn:3] elp result last good commit:
org-babel-expand-src-block 1 0.853276 0.853276
org-edit-src-code 1 0.58143 0.58143
org-entry-get 2220 0.4699039999 0.0002116684
org-babel-edit-prep:R 1 0.46897 0.46897
org-babel-R-initiate-session 1 0.468958 0.468958
org-babel-expand-noweb-references 5 0.340635 0.0681270000
org-babel-get-src-block-info 7 0.32633 0.0466185714
org-babel-parse-src-block-match 7 0.3256329999 0.0465189999
org-babel-params-from-properties 7 0.3117870000 0.0445410000
org-entry-get-with-inheritance 518 0.3088709999 0.0005962760
org-up-heading-safe 1702 0.0883419999 5.190...e-05
org-get-property-block 1702 0.0846720000 4.974...e-05
org-back-to-heading 3404 0.0623720000 1.832...e-05
org-edit-src-find-region-and-lang 1 0.052575 0.052575
org-before-first-heading-p 2220 0.0260470000 1.173...e-05
org-babel-params-from-buffer 7 0.0117110000 0.0016730000
org-outline-level 2886 0.0047120000 1.632...e-06
org-babel-find-named-block 4 0.003625 0.00090625
org-babel-merge-params 29 0.0014899999 5.137...e-05
org-babel-parse-header-arguments 28 0.00076 2.714...e-05
org-babel-where-is-src-block-head 7 0.000354 5.057...e-05
org-do-remove-indentation 8 0.0003219999 4.024...e-05
org-not-nil 518 0.0002629999 5.077...e-07
org-babel-read 30 0.000171 5.700...e-06
org-uniquify 96 0.0001619999 1.687...e-06
org-src-switch-to-buffer 1 0.000161 0.000161
org-switch-to-buffer-other-window 1 0.000153 0.000153
org-edit-src-find-buffer 1 0.00014 0.00014
org-mode-flyspell-verify 1 0.000123 0.000123
org-babel-trim 4 8.999...e-05 2.249...e-05
org-make-options-regexp 28 7.900...e-05 2.821...e-06
org-babel-chomp 38 6.899...e-05 1.815...e-06
org-babel-strip-protective-commas 7 6.000...e-05 8.571...e-06
org-edit-src-get-indentation 1 5.4e-05 5.4e-05
org-babel-number-p 30 5.000...e-05 1.666...e-06
org-get-indentation 1 4.6e-05 4.6e-05
org-babel-process-params 2 4.499...e-05 2.249...e-05
org-babel-reverse-string 8 3.999...e-05 4.999...e-06
org-babel-clean-text-properties 28 3.000...e-05 1.071...e-06
org-src-mode 1 2.3e-05 2.3e-05
org-babel-get-header 5 1.9e-05 3.8e-06
org-babel-expand-body:R 1 1.9e-05 1.9e-05
org-babel-named-src-block-regexp-for-name 4 1.399...e-05 3.499...e-06
org-babel-variable-assignments:R 1 1.2e-05 1.2e-05
org-edit-src-get-label-format 1 1.2e-05 1.2e-05
org-src-babel-configure-edit-buffer 1 9e-06 9e-06
org-src-mode-configure-edit-buffer 1 8e-06 8e-06
org-edit-src-get-lang 1 6e-06 6e-06
org-add-hook 1 5e-06 5e-06
org-src-associate-babel-session 1 5e-06 5e-06
org-move-to-column 1 4e-06 4e-06
org-babel-disassemble-tables 2 2e-06 1e-06
org-region-active-p 1 2e-06 2e-06
org-number-sequence 1 2e-06 2e-06
org-babel-comint-buffer-livep 2 2e-06 1e-06
org-babel-R-graphical-output-file 1 1e-06 1e-06
[fn:4] elp result problematic commit
org-babel-expand-noweb-references 5 31.696517 6.3393034
org-entry-get 130002 24.352512999 0.0001873241
org-babel-expand-src-block 1 19.233299 19.233299
org-babel-get-src-block-info 327 19.045015000 0.0582416360
org-babel-parse-src-block-match 327 19.000417999 0.0581052538
org-babel-params-from-properties 327 17.089966999 0.0522628960
org-entry-get-with-inheritance 23838 16.555423999 0.0006944971
org-up-heading-safe 106164 7.4488420000 7.016...e-05
org-get-property-block 106164 4.4522569999 4.193...e-05
org-before-first-heading-p 130002 2.1264209999 1.635...e-05
org-back-to-heading 212328 1.7064339999 8.036...e-06
org-babel-merge-params 1309 1.3357350000 0.0010204239
org-babel-params-from-buffer 327 1.2614980000 0.0038577920
org-outline-level 188490 0.9018869999 4.784...e-06
org-edit-src-code 1 0.190142 0.190142
org-babel-parse-header-arguments 1308 0.0611450000 4.674...e-05
org-edit-src-find-region-and-lang 1 0.047875 0.047875
org-do-remove-indentation 328 0.0269740000 8.223...e-05
org-babel-where-is-src-block-head 327 0.0229660000 7.023...e-05
org-not-nil 23838 0.0112739999 4.729...e-07
org-babel-read 1578 0.0100570000 6.373...e-06
org-uniquify 4217 0.0058860000 1.395...e-06
org-babel-strip-protective-commas 327 0.0035549999 1.087...e-05
org-make-options-regexp 1308 0.0032889999 2.514...e-06
org-babel-chomp 1578 0.0030609999 1.939...e-06
org-edit-src-exit 1 0.002847 0.002847
org-babel-number-p 1578 0.0023579999 1.494...e-06
org-babel-clean-text-properties 1305 0.0020099999 1.540...e-06
org-match-string-no-properties 981 0.0014470000 1.475...e-06
org-src-switch-to-buffer 2 0.000706 0.000353
org-edit-src-find-buffer 1 0.000486 0.000486
org-switch-to-buffer-other-window 2 0.000389 0.0001945
org-babel-process-params 2 8.8e-05 4.4e-05
org-mode-flyspell-verify 1 5.5e-05 5.5e-05
org-babel-get-header 5 5.400...e-05 1.080...e-05
org-src-mode 1 4.2e-05 4.2e-05
org-edit-src-get-indentation 2 3.9e-05 1.95e-05
org-babel-expand-body:R 1 3.6e-05 3.6e-05
org-get-indentation 2 3.000...e-05 1.500...e-05
org-src-babel-configure-edit-buffer 1 2.5e-05 2.5e-05
org-babel-variable-assignments:R 1 2.4e-05 2.4e-05
org-move-to-column 2 2.4e-05 1.2e-05
org-src-associate-babel-session 1 2.2e-05 2.2e-05
org-babel-edit-prep:R 1 1.9e-05 1.9e-05
org-edit-src-get-lang 2 9e-06 4.5e-06
org-src-mode-configure-edit-buffer 1 8e-06 8e-06
org-edit-src-get-label-format 2 7e-06 3.5e-06
org-babel-R-associate-session 1 6e-06 6e-06
org-babel-R-initiate-session 1 6e-06 6e-06
org-add-hook 1 5e-06 5e-06
org-babel-comint-buffer-livep 2 4.999...e-06 2.499...e-06
org-babel-disassemble-tables 2 4e-06 2e-06
org-babel-R-graphical-output-file 1 2e-06 2e-06
org-number-sequence 1 2e-06 2e-06
org-region-active-p 1 1e-06 1e-06
[fn:5] elp result from the current HEAD (baae11d38ccf71d835c68b25dec88311f26625b4)
org-babel-expand-noweb-references 5 16.7724 3.35448
org-entry-get 73866 14.340808999 0.0001941462
org-babel-expand-src-block 1 10.147227 10.147227
org-babel-get-src-block-info 327 10.072349999 0.0308022935
org-babel-parse-src-block-match 327 10.051350000 0.0307380733
org-babel-params-from-properties 327 9.8570869999 0.0301439969
org-entry-get-with-inheritance 13554 9.6411849999 0.0007113165
org-up-heading-safe 60312 4.0404989999 6.699...e-05
org-get-property-block 60312 2.4755100000 4.104...e-05
org-back-to-heading 120624 1.2751989999 1.057...e-05
org-before-first-heading-p 73866 1.1468149999 1.552...e-05
org-outline-level 107070 0.6830879999 6.379...e-06
org-edit-src-code 1 0.06919 0.06919
org-edit-src-find-region-and-lang 1 0.04786 0.04786
org-babel-strip-protective-commas 327 0.0461469999 0.0001411223
org-babel-merge-params 328 0.0270430000 8.244...e-05
org-do-remove-indentation 328 0.0259550000 7.913...e-05
org-babel-parse-header-arguments 327 0.0254640000 7.787...e-05
org-babel-where-is-src-block-head 327 0.0111359999 3.405...e-05
org-babel-balanced-split 351 0.0105150000 2.995...e-05
org-babel-read 1578 0.0085669999 5.429...e-06
org-babel-ref-goto-headline-id 4 0.0083590000 0.0020897500
org-not-nil 13554 0.0065560000 4.836...e-07
org-id-find-id-in-file 4 0.003685 0.00092125
org-find-entry-with-id 4 0.0034720000 0.0008680000
org-uniquify 2582 0.0033410000 1.293...e-06
org-babel-number-p 1578 0.0026629999 1.687...e-06
org-babel-parse-multiple-vars 645 0.0024450000 3.790...e-06
org-babel-chomp 663 0.0013199999 1.990...e-06
org-babel-clean-text-properties 1305 0.0009750000 7.471...e-07
org-babel-trim 33 0.0004450000 1.348...e-05
org-src-switch-to-buffer 1 0.000372 0.000372
org-switch-to-buffer-other-window 1 0.000365 0.000365
org-babel-join-splits-near-ch 33 0.0001880000 5.696...e-06
org-edit-src-find-buffer 1 0.000187 0.000187
org-babel-reverse-string 66 0.0001189999 1.803...e-06
org-reduce 33 6.6e-05 2.000...e-06
org-mode-flyspell-verify 1 5.9e-05 5.9e-05
org-edit-src-get-indentation 2 4.5e-05 2.25e-05
org-get-agenda-file-buffer 4 4.499...e-05 1.124...e-05
org-babel-process-params 2 4.4e-05 2.2e-05
org-get-indentation 2 3.7e-05 1.85e-05
org-src-mode 1 3.7e-05 3.7e-05
org-find-base-buffer-visiting 4 3.4e-05 8.5e-06
org-src-babel-configure-edit-buffer 1 2e-05 2e-05
org-babel-expand-body:R 1 2e-05 2e-05
org-babel-get-header 5 1.7e-05 3.4e-06
org-src-associate-babel-session 1 1.7e-05 1.7e-05
org-babel-edit-prep:R 1 1.4e-05 1.4e-05
org-babel-variable-assignments:R 1 1.1e-05 1.1e-05
org-edit-src-get-lang 2 9.999...e-06 4.999...e-06
org-src-mode-configure-edit-buffer 1 9e-06 9e-06
org-id-find-id-file 4 9e-06 2.25e-06
org-edit-src-get-label-format 2 8.000...e-06 4.000...e-06
org-move-to-column 1 7e-06 7e-06
org-babel-disassemble-tables 2 4e-06 2e-06
org-babel-R-associate-session 1 4e-06 4e-06
org-babel-R-initiate-session 1 4e-06 4e-06
org-add-hook 1 4e-06 4e-06
org-babel-comint-buffer-livep 2 3e-06 1.5e-06
org-babel-R-graphical-output-file 1 2e-06 2e-06
org-region-active-p 1 2e-06 2e-06
org-number-sequence 1 2e-06 2e-06
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [babel] speed of continued source blocks
2011-12-10 23:30 [babel] speed of continued source blocks Andreas Leha
@ 2011-12-11 16:53 ` Eric Schulte
2011-12-11 18:04 ` Andreas Leha
0 siblings, 1 reply; 5+ messages in thread
From: Eric Schulte @ 2011-12-11 16:53 UTC (permalink / raw)
To: Andreas Leha; +Cc: emacs-orgmode
Hi Andreas,
I've just pushed up a patch which should speed up the collection of
continued source blocks. Please let me know if the performance increase
is sufficient for your example, if not we can look at more dramatic
methods of optimization or possibly at making the collection of such
blocks conditional.
One option to avoid this overhead could be to add the following
#+PROPERTY: noweb no
to the top of your Org-mode file.
Best,
Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
> Hi all,
>
> there is a significant performance drop connected to (the quite old) commit
> 8c37281cb63a0b5cb0d84d22960e3a33d7680d40
> ob-tangle: continued code blocks now implemented with the :noweb-ref header arg
> which introduces the continued code blocks.
>
> On the test file ([fn:1] for the old syntax, [fn:2] for the new
> syntax) do org-babel-expand-src-block (C-c C-v v) on
> the first source code block to see the effect.
>
> Just before this commit I get instantaneous reaction (elp: [fn:3]), with
> the commit I have to wait about 20 seconds (elp: [fn:4])
> Recently things improved a bit, but still it takes about 10 seconds
> to expand the source block (elp: [fn:5]).
>
> Since working interactively with the (R-)code in the org-file is
> impossible this way, here comes my question:
>
> Is it possible to either
> (a) speed up the continued source blocks
> or
> (b) make the continued code blocks an optional feature
> in order to improve the performance to the previous state again?
>
> I'd be happy with solution (b), but unfortunately, it is beyond my
> elisp to do so.
>
> Any help highly appreciated,
> Andreas
>
>
> [fn:1] test file with old syntax: http://pastebin.com/aL9axJMJ
>
> [fn:2] test file with new syntax: http://pastebin.com/c42jS1Be
>
> [fn:3] elp result last good commit:
> org-babel-expand-src-block 1 0.853276 0.853276
> org-edit-src-code 1 0.58143 0.58143
> org-entry-get 2220 0.4699039999 0.0002116684
> org-babel-edit-prep:R 1 0.46897 0.46897
> org-babel-R-initiate-session 1 0.468958 0.468958
> org-babel-expand-noweb-references 5 0.340635 0.0681270000
> org-babel-get-src-block-info 7 0.32633 0.0466185714
> org-babel-parse-src-block-match 7 0.3256329999 0.0465189999
> org-babel-params-from-properties 7 0.3117870000 0.0445410000
> org-entry-get-with-inheritance 518 0.3088709999 0.0005962760
> org-up-heading-safe 1702 0.0883419999 5.190...e-05
> org-get-property-block 1702 0.0846720000 4.974...e-05
> org-back-to-heading 3404 0.0623720000 1.832...e-05
> org-edit-src-find-region-and-lang 1 0.052575 0.052575
> org-before-first-heading-p 2220 0.0260470000 1.173...e-05
> org-babel-params-from-buffer 7 0.0117110000 0.0016730000
> org-outline-level 2886 0.0047120000 1.632...e-06
> org-babel-find-named-block 4 0.003625 0.00090625
> org-babel-merge-params 29 0.0014899999 5.137...e-05
> org-babel-parse-header-arguments 28 0.00076 2.714...e-05
> org-babel-where-is-src-block-head 7 0.000354 5.057...e-05
> org-do-remove-indentation 8 0.0003219999 4.024...e-05
> org-not-nil 518 0.0002629999 5.077...e-07
> org-babel-read 30 0.000171 5.700...e-06
> org-uniquify 96 0.0001619999 1.687...e-06
> org-src-switch-to-buffer 1 0.000161 0.000161
> org-switch-to-buffer-other-window 1 0.000153 0.000153
> org-edit-src-find-buffer 1 0.00014 0.00014
> org-mode-flyspell-verify 1 0.000123 0.000123
> org-babel-trim 4 8.999...e-05 2.249...e-05
> org-make-options-regexp 28 7.900...e-05 2.821...e-06
> org-babel-chomp 38 6.899...e-05 1.815...e-06
> org-babel-strip-protective-commas 7 6.000...e-05 8.571...e-06
> org-edit-src-get-indentation 1 5.4e-05 5.4e-05
> org-babel-number-p 30 5.000...e-05 1.666...e-06
> org-get-indentation 1 4.6e-05 4.6e-05
> org-babel-process-params 2 4.499...e-05 2.249...e-05
> org-babel-reverse-string 8 3.999...e-05 4.999...e-06
> org-babel-clean-text-properties 28 3.000...e-05 1.071...e-06
> org-src-mode 1 2.3e-05 2.3e-05
> org-babel-get-header 5 1.9e-05 3.8e-06
> org-babel-expand-body:R 1 1.9e-05 1.9e-05
> org-babel-named-src-block-regexp-for-name 4 1.399...e-05 3.499...e-06
> org-babel-variable-assignments:R 1 1.2e-05 1.2e-05
> org-edit-src-get-label-format 1 1.2e-05 1.2e-05
> org-src-babel-configure-edit-buffer 1 9e-06 9e-06
> org-src-mode-configure-edit-buffer 1 8e-06 8e-06
> org-edit-src-get-lang 1 6e-06 6e-06
> org-add-hook 1 5e-06 5e-06
> org-src-associate-babel-session 1 5e-06 5e-06
> org-move-to-column 1 4e-06 4e-06
> org-babel-disassemble-tables 2 2e-06 1e-06
> org-region-active-p 1 2e-06 2e-06
> org-number-sequence 1 2e-06 2e-06
> org-babel-comint-buffer-livep 2 2e-06 1e-06
> org-babel-R-graphical-output-file 1 1e-06 1e-06
>
> [fn:4] elp result problematic commit
> org-babel-expand-noweb-references 5 31.696517 6.3393034
> org-entry-get 130002 24.352512999 0.0001873241
> org-babel-expand-src-block 1 19.233299 19.233299
> org-babel-get-src-block-info 327 19.045015000 0.0582416360
> org-babel-parse-src-block-match 327 19.000417999 0.0581052538
> org-babel-params-from-properties 327 17.089966999 0.0522628960
> org-entry-get-with-inheritance 23838 16.555423999 0.0006944971
> org-up-heading-safe 106164 7.4488420000 7.016...e-05
> org-get-property-block 106164 4.4522569999 4.193...e-05
> org-before-first-heading-p 130002 2.1264209999 1.635...e-05
> org-back-to-heading 212328 1.7064339999 8.036...e-06
> org-babel-merge-params 1309 1.3357350000 0.0010204239
> org-babel-params-from-buffer 327 1.2614980000 0.0038577920
> org-outline-level 188490 0.9018869999 4.784...e-06
> org-edit-src-code 1 0.190142 0.190142
> org-babel-parse-header-arguments 1308 0.0611450000 4.674...e-05
> org-edit-src-find-region-and-lang 1 0.047875 0.047875
> org-do-remove-indentation 328 0.0269740000 8.223...e-05
> org-babel-where-is-src-block-head 327 0.0229660000 7.023...e-05
> org-not-nil 23838 0.0112739999 4.729...e-07
> org-babel-read 1578 0.0100570000 6.373...e-06
> org-uniquify 4217 0.0058860000 1.395...e-06
> org-babel-strip-protective-commas 327 0.0035549999 1.087...e-05
> org-make-options-regexp 1308 0.0032889999 2.514...e-06
> org-babel-chomp 1578 0.0030609999 1.939...e-06
> org-edit-src-exit 1 0.002847 0.002847
> org-babel-number-p 1578 0.0023579999 1.494...e-06
> org-babel-clean-text-properties 1305 0.0020099999 1.540...e-06
> org-match-string-no-properties 981 0.0014470000 1.475...e-06
> org-src-switch-to-buffer 2 0.000706 0.000353
> org-edit-src-find-buffer 1 0.000486 0.000486
> org-switch-to-buffer-other-window 2 0.000389 0.0001945
> org-babel-process-params 2 8.8e-05 4.4e-05
> org-mode-flyspell-verify 1 5.5e-05 5.5e-05
> org-babel-get-header 5 5.400...e-05 1.080...e-05
> org-src-mode 1 4.2e-05 4.2e-05
> org-edit-src-get-indentation 2 3.9e-05 1.95e-05
> org-babel-expand-body:R 1 3.6e-05 3.6e-05
> org-get-indentation 2 3.000...e-05 1.500...e-05
> org-src-babel-configure-edit-buffer 1 2.5e-05 2.5e-05
> org-babel-variable-assignments:R 1 2.4e-05 2.4e-05
> org-move-to-column 2 2.4e-05 1.2e-05
> org-src-associate-babel-session 1 2.2e-05 2.2e-05
> org-babel-edit-prep:R 1 1.9e-05 1.9e-05
> org-edit-src-get-lang 2 9e-06 4.5e-06
> org-src-mode-configure-edit-buffer 1 8e-06 8e-06
> org-edit-src-get-label-format 2 7e-06 3.5e-06
> org-babel-R-associate-session 1 6e-06 6e-06
> org-babel-R-initiate-session 1 6e-06 6e-06
> org-add-hook 1 5e-06 5e-06
> org-babel-comint-buffer-livep 2 4.999...e-06 2.499...e-06
> org-babel-disassemble-tables 2 4e-06 2e-06
> org-babel-R-graphical-output-file 1 2e-06 2e-06
> org-number-sequence 1 2e-06 2e-06
> org-region-active-p 1 1e-06 1e-06
>
> [fn:5] elp result from the current HEAD (baae11d38ccf71d835c68b25dec88311f26625b4)
> org-babel-expand-noweb-references 5 16.7724 3.35448
> org-entry-get 73866 14.340808999 0.0001941462
> org-babel-expand-src-block 1 10.147227 10.147227
> org-babel-get-src-block-info 327 10.072349999 0.0308022935
> org-babel-parse-src-block-match 327 10.051350000 0.0307380733
> org-babel-params-from-properties 327 9.8570869999 0.0301439969
> org-entry-get-with-inheritance 13554 9.6411849999 0.0007113165
> org-up-heading-safe 60312 4.0404989999 6.699...e-05
> org-get-property-block 60312 2.4755100000 4.104...e-05
> org-back-to-heading 120624 1.2751989999 1.057...e-05
> org-before-first-heading-p 73866 1.1468149999 1.552...e-05
> org-outline-level 107070 0.6830879999 6.379...e-06
> org-edit-src-code 1 0.06919 0.06919
> org-edit-src-find-region-and-lang 1 0.04786 0.04786
> org-babel-strip-protective-commas 327 0.0461469999 0.0001411223
> org-babel-merge-params 328 0.0270430000 8.244...e-05
> org-do-remove-indentation 328 0.0259550000 7.913...e-05
> org-babel-parse-header-arguments 327 0.0254640000 7.787...e-05
> org-babel-where-is-src-block-head 327 0.0111359999 3.405...e-05
> org-babel-balanced-split 351 0.0105150000 2.995...e-05
> org-babel-read 1578 0.0085669999 5.429...e-06
> org-babel-ref-goto-headline-id 4 0.0083590000 0.0020897500
> org-not-nil 13554 0.0065560000 4.836...e-07
> org-id-find-id-in-file 4 0.003685 0.00092125
> org-find-entry-with-id 4 0.0034720000 0.0008680000
> org-uniquify 2582 0.0033410000 1.293...e-06
> org-babel-number-p 1578 0.0026629999 1.687...e-06
> org-babel-parse-multiple-vars 645 0.0024450000 3.790...e-06
> org-babel-chomp 663 0.0013199999 1.990...e-06
> org-babel-clean-text-properties 1305 0.0009750000 7.471...e-07
> org-babel-trim 33 0.0004450000 1.348...e-05
> org-src-switch-to-buffer 1 0.000372 0.000372
> org-switch-to-buffer-other-window 1 0.000365 0.000365
> org-babel-join-splits-near-ch 33 0.0001880000 5.696...e-06
> org-edit-src-find-buffer 1 0.000187 0.000187
> org-babel-reverse-string 66 0.0001189999 1.803...e-06
> org-reduce 33 6.6e-05 2.000...e-06
> org-mode-flyspell-verify 1 5.9e-05 5.9e-05
> org-edit-src-get-indentation 2 4.5e-05 2.25e-05
> org-get-agenda-file-buffer 4 4.499...e-05 1.124...e-05
> org-babel-process-params 2 4.4e-05 2.2e-05
> org-get-indentation 2 3.7e-05 1.85e-05
> org-src-mode 1 3.7e-05 3.7e-05
> org-find-base-buffer-visiting 4 3.4e-05 8.5e-06
> org-src-babel-configure-edit-buffer 1 2e-05 2e-05
> org-babel-expand-body:R 1 2e-05 2e-05
> org-babel-get-header 5 1.7e-05 3.4e-06
> org-src-associate-babel-session 1 1.7e-05 1.7e-05
> org-babel-edit-prep:R 1 1.4e-05 1.4e-05
> org-babel-variable-assignments:R 1 1.1e-05 1.1e-05
> org-edit-src-get-lang 2 9.999...e-06 4.999...e-06
> org-src-mode-configure-edit-buffer 1 9e-06 9e-06
> org-id-find-id-file 4 9e-06 2.25e-06
> org-edit-src-get-label-format 2 8.000...e-06 4.000...e-06
> org-move-to-column 1 7e-06 7e-06
> org-babel-disassemble-tables 2 4e-06 2e-06
> org-babel-R-associate-session 1 4e-06 4e-06
> org-babel-R-initiate-session 1 4e-06 4e-06
> org-add-hook 1 4e-06 4e-06
> org-babel-comint-buffer-livep 2 3e-06 1.5e-06
> org-babel-R-graphical-output-file 1 2e-06 2e-06
> org-region-active-p 1 2e-06 2e-06
> org-number-sequence 1 2e-06 2e-06
>
>
--
Eric Schulte
http://cs.unm.edu/~eschulte/
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [babel] speed of continued source blocks
2011-12-11 16:53 ` Eric Schulte
@ 2011-12-11 18:04 ` Andreas Leha
2011-12-11 19:04 ` Eric Schulte
0 siblings, 1 reply; 5+ messages in thread
From: Andreas Leha @ 2011-12-11 18:04 UTC (permalink / raw)
To: emacs-orgmode
Hi Eric,
thanks for looking into this providing a patch already!
> I've just pushed up a patch which should speed up the collection of
> continued source blocks. Please let me know if the performance increase
> is sufficient for your example, if not we can look at more dramatic
> methods of optimization or possibly at making the collection of such
> blocks conditional.
The speed looks very good already! But now org-babel-expand-src-block
(as well es the source block evaluation) seems not to expand the noweb
references at all and more. Is that a problem only on my side?
> One option to avoid this overhead could be to add the following
>
> #+PROPERTY: noweb no
>
> to the top of your Org-mode file.
Since I heavily rely on the noweb references, this is not an option for me.
Cheers,
Andreas
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [babel] speed of continued source blocks
2011-12-11 18:04 ` Andreas Leha
@ 2011-12-11 19:04 ` Eric Schulte
2011-12-11 20:00 ` Andreas Leha
0 siblings, 1 reply; 5+ messages in thread
From: Eric Schulte @ 2011-12-11 19:04 UTC (permalink / raw)
To: Andreas Leha; +Cc: emacs-orgmode
Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
> Hi Eric,
>
> thanks for looking into this providing a patch already!
>
>> I've just pushed up a patch which should speed up the collection of
>> continued source blocks. Please let me know if the performance increase
>> is sufficient for your example, if not we can look at more dramatic
>> methods of optimization or possibly at making the collection of such
>> blocks conditional.
>
> The speed looks very good already!
Great, unless I hear back I'll assume this issue is resolved. Thanks
for the stress testing.
> But now org-babel-expand-src-block (as well es the source block
> evaluation) seems not to expand the noweb references at all and more.
> Is that a problem only on my side?
>
Thanks for catching this, I was only testing :noweb-ref references, not
named code block references. I've just fixed this issue and added an
exercising test case so this won't happen in the future.
Please let me know if any problems remain.
Cheers,
>
>
>> One option to avoid this overhead could be to add the following
>>
>> #+PROPERTY: noweb no
>>
>> to the top of your Org-mode file.
>
> Since I heavily rely on the noweb references, this is not an option for me.
>
> Cheers,
> Andreas
>
>
--
Eric Schulte
http://cs.unm.edu/~eschulte/
^ permalink raw reply [flat|nested] 5+ messages in thread
* Re: [babel] speed of continued source blocks
2011-12-11 19:04 ` Eric Schulte
@ 2011-12-11 20:00 ` Andreas Leha
0 siblings, 0 replies; 5+ messages in thread
From: Andreas Leha @ 2011-12-11 20:00 UTC (permalink / raw)
To: emacs-orgmode
Hi Eric,
Eric Schulte <eric.schulte@gmx.com> writes:
> Andreas Leha <andreas.leha@med.uni-goettingen.de> writes:
>
>> Hi Eric,
>>
>> thanks for looking into this providing a patch already!
>>
>>> I've just pushed up a patch which should speed up the collection of
>>> continued source blocks. Please let me know if the performance increase
>>> is sufficient for your example, if not we can look at more dramatic
>>> methods of optimization or possibly at making the collection of such
>>> blocks conditional.
>>
>> The speed looks very good already!
>
> Great, unless I hear back I'll assume this issue is resolved. Thanks
> for the stress testing.
>
>> But now org-babel-expand-src-block (as well es the source block
>> evaluation) seems not to expand the noweb references at all and more.
>> Is that a problem only on my side?
>>
>
> Thanks for catching this, I was only testing :noweb-ref references, not
> named code block references. I've just fixed this issue and added an
> exercising test case so this won't happen in the future.
>
> Please let me know if any problems remain.
>
> Cheers,
>
>>
>>
>>> One option to avoid this overhead could be to add the following
>>>
>>> #+PROPERTY: noweb no
>>>
>>> to the top of your Org-mode file.
>>
>> Since I heavily rely on the noweb references, this is not an option for me.
>>
>> Cheers,
>> Andreas
>>
>>
thanks a lot! Works great now.
Cheers,
Andreas
^ permalink raw reply [flat|nested] 5+ messages in thread
end of thread, other threads:[~2011-12-11 20:01 UTC | newest]
Thread overview: 5+ messages (download: mbox.gz / follow: Atom feed)
-- links below jump to the message on this page --
2011-12-10 23:30 [babel] speed of continued source blocks Andreas Leha
2011-12-11 16:53 ` Eric Schulte
2011-12-11 18:04 ` Andreas Leha
2011-12-11 19:04 ` Eric Schulte
2011-12-11 20:00 ` Andreas Leha
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