At Wed, 15 Dec 2010 17:33:38 -1000,
Thomas S. Dye wrote:
> Perhaps it has to do with footnotes?  That's an org-mode environment
> with square brackets and, in some instances, a superscript number.

Yes, this was the problem: When preprocessing the buffer for LaTeX
export Org converted anything that looks like a numeric footnote into
a LaTeX-Footnote.  I just pushed a fix to master that should take care
of the problem.

The implication of this modification is that you cannot place a
footnote right after a closed square bracket because the LaTeX
processing function from now on skips [\d+] if it character before is
a closed square bracket.

Best,
  -- David

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