From: Aaron Ecay <aaronecay@gmail.com>
To: nicholas.dokos@hp.com, John Hendy <jw.hendy@gmail.com>
Cc: cberry@tajo.ucsd.edu, emacs-orgmode@gnu.org
Subject: Re: Bug? R: Org babel block execution *drastically* slower than in ESS session directly
Date: Tue, 13 Nov 2012 22:27:44 -0500 [thread overview]
Message-ID: <87d2zgrhhr.fsf@gmail.com> (raw)
In-Reply-To: <14621.1351795682@alphaville>
I just ran into this problem. It is caused by the calls to
‘org-babel-import-elisp-from-file’ on lines 310 and 343 of ‘ob-R.el’
(for non-session and session code blocks respectively). I determined
this by setting ‘debug-on-quit’ to t in Emacs, then hitting C-g when cpu
usage spiked, and examining the backtrace.
It seems like Emacs tries to read in the last value of the R command, to
print it in the minibuffer. It gets bogged down doing so. As a
stopgap, putting NULL as the last line of the source block fixes the
problem (the value “returned” by the block is just NULL). I believe
setting “:results output” (as opposed to “value”) would also make the
bug disappear, since the output will be very small. This is likely what
made cberry’s test differ from John’s.
I’m not sure what the right strategy would be for a fix. Two ideas
would be:
1) adding a sanity check to o-b-import-elisp-from-file, which asks the
user whether to really import very large files (or just ignores such
files)
2) adding a new :results handling header arg “really-silent” (probably
with a better name...) that discards the result entirely, not even
printing it to the minibuffer.
--
Aaron Ecay
next prev parent reply other threads:[~2012-11-14 3:27 UTC|newest]
Thread overview: 217+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-10-31 6:12 Bug? R: Org babel block execution *drastically* slower than in ESS session directly John Hendy
2012-10-31 16:41 ` cberry
2012-10-31 17:18 ` John Hendy
2012-10-31 20:12 ` cberry
2012-10-31 20:23 ` John Hendy
2012-10-31 20:56 ` Thomas S. Dye
2012-10-31 23:00 ` Nick Dokos
2012-10-31 22:53 ` Nick Dokos
2012-11-01 14:53 ` John Hendy
2012-11-01 15:38 ` Nick Dokos
2012-11-01 18:17 ` John Hendy
2012-11-01 18:18 ` John Hendy
2012-11-01 18:48 ` Nick Dokos
2012-11-14 3:27 ` Aaron Ecay [this message]
2012-11-14 4:52 ` John Hendy
2012-11-14 6:32 ` Aaron Ecay
2012-11-14 8:28 ` Thomas S. Dye
2012-11-14 8:35 ` Andreas Leha
2012-11-16 15:45 ` Eric Schulte
2012-11-16 17:47 ` Andreas Leha
2012-11-16 19:00 ` John Hendy
2012-11-16 20:25 ` Achim Gratz
2012-11-17 17:12 ` Eric Schulte
2012-11-18 0:41 ` Aaron Ecay
2012-11-18 0:57 ` Eric Schulte
2012-11-18 1:41 ` Aaron Ecay
2012-11-19 1:18 ` Eric Schulte
2012-11-19 5:11 ` Eric Schulte
-- strict thread matches above, loose matches on Subject: below --
2013-03-19 21:40 python sessions Gary Oberbrunner
2013-03-20 0:04 ` John Hendy
2013-03-20 3:07 ` Nick Dokos
2013-03-20 6:44 ` Andreas Röhler
2013-03-20 12:54 ` Ista Zahn
2013-03-20 14:08 ` Nick Dokos
2013-03-20 14:28 ` Gary Oberbrunner
2013-03-20 17:21 ` Andreas Röhler
2013-03-20 7:08 ` Andreas Röhler
2013-03-20 15:38 ` John Hendy
2013-03-20 15:42 ` John Hendy
2013-03-20 16:06 ` Nick Dokos
[not found] ` <CAFChFygsUeBejEY6m2bSU0C5cjLYz0nUADH=s+BYxajfZ2sKKQ@mail.gmail.com>
2013-03-20 16:12 ` Fwd: " Gary Oberbrunner
2013-03-20 17:08 ` Andreas Röhler
2013-03-20 17:25 ` Nick Dokos
2013-03-20 17:54 ` John Hendy
2013-03-20 18:15 ` Nick Dokos
2013-03-20 18:32 ` Ista Zahn
2013-03-20 18:39 ` Nick Dokos
2013-03-20 18:43 ` Andreas Röhler
2013-03-20 19:42 ` Ista Zahn
2013-03-20 19:53 ` Andreas Röhler
2013-03-20 20:12 ` Ista Zahn
2013-03-20 20:25 ` Gary Oberbrunner
2013-03-20 22:06 ` Ista Zahn
2013-03-20 18:42 ` Andreas Röhler
2013-03-20 19:01 ` Andreas Röhler
[not found] ` <CAFChFygPrhuHHyMo2Vk2_OdksWVB=oACA7jnOXN+itUNqh-nqw@mail.gmail.com>
[not found] ` <CA+M2ft9bO7DU61vVeYrhduVvkg1V6PMuiyvsOy5tNWuXcSUEpw@mail.gmail.com>
[not found] ` <CAFChFyhbeXE4HNLKA6Ubii+MtQwD7=4khAypa+--coZrQiJekA@mail.gmail.com>
2013-03-21 1:22 ` Gary Oberbrunner
2013-03-21 1:54 ` John Hendy
2013-03-21 1:56 ` Gary Oberbrunner
2013-03-21 7:42 ` Andreas Röhler
2013-03-21 7:43 ` Bastien
2013-03-21 8:13 ` Andreas Röhler
2013-03-23 22:07 ` Eric Schulte
2013-03-24 1:29 ` John Hendy
2013-03-24 22:59 ` Eric Schulte
2013-03-25 2:38 ` Nick Dokos
2013-03-25 2:59 ` John Hendy
2013-03-25 6:34 ` Andreas Röhler
2013-03-25 15:40 ` Eric Schulte
2013-03-25 15:55 ` John Hendy
2013-03-25 16:07 ` Eric Schulte
2013-03-25 16:41 ` Nick Dokos
2013-03-25 16:01 ` Ista Zahn
2013-03-25 16:23 ` John Hendy
2013-03-25 16:43 ` Eric Schulte
2013-03-25 17:27 ` Andreas Röhler
2013-03-25 17:41 ` John Hendy
2013-03-25 18:16 ` Ista Zahn
2013-03-25 19:30 ` Ivan Andrus
2013-03-24 7:47 ` Andreas Röhler
2013-03-24 14:47 ` John Hendy
2013-03-24 15:30 ` Andreas Röhler
2013-03-24 16:58 ` Nick Dokos
2013-03-24 16:59 ` John Hendy
2013-03-24 18:41 ` Nick Dokos
2013-03-25 20:46 ` Andreas Röhler
2013-03-25 21:37 ` Eric Schulte
2013-03-26 6:29 ` Andreas Röhler
2013-03-26 12:32 ` Eric Schulte
2013-03-26 21:41 ` Gary Oberbrunner
2013-03-26 21:47 ` John Hendy
2013-03-27 6:19 ` Andreas Röhler
2013-03-30 7:19 ` Andreas Röhler
2012-08-26 20:11 Alternate format for datetree c b
2012-08-27 1:16 ` John Hendy
2012-08-27 4:04 ` Nick Dokos
2012-08-27 6:08 ` John Hendy
2012-08-28 8:49 ` Ian Barton
2012-08-28 12:49 ` Nick Dokos
2012-08-28 12:50 ` Nick Dokos
2012-08-29 7:49 ` Ian Barton
[not found] ` <lists@manor-farm.org>
2012-08-29 14:17 ` Nick Dokos
2012-08-29 14:25 ` John Hendy
2012-08-29 20:01 ` Ian Barton
2012-09-06 7:46 ` Ian Barton
2012-09-06 5:42 ` c b
2012-09-06 6:26 ` Nick Dokos
2012-09-06 7:00 ` Jambunathan K
2012-09-06 15:33 ` John Hendy
2012-09-06 16:08 ` Jonathan Leech-Pepin
2011-11-02 2:22 Pass LaTeX exporter option prior to \documentclass John Hendy
2011-11-02 2:43 ` suvayu ali
2011-11-02 10:30 ` suvayu ali
2011-11-03 17:48 ` John Hendy
2011-11-03 17:55 ` suvayu ali
2011-11-03 18:07 ` John Hendy
2011-11-04 17:29 ` Nick Dokos
2011-11-04 19:29 ` suvayu ali
2011-10-19 14:54 Prompt for time when clocking in? Nathan Neff
2011-10-19 15:12 ` John Hendy
2011-10-19 15:35 ` Nick Dokos
2011-10-20 16:15 ` Nathan Neff
2011-10-20 17:09 ` Nick Dokos
2011-10-20 17:44 ` Nathan Neff
2011-10-19 16:37 ` Bernt Hansen
2011-08-05 22:15 Handling errors in command line exporting of agenda? John Hendy
2011-08-05 23:34 ` suvayu ali
2011-08-05 23:35 ` suvayu ali
2011-08-08 18:12 ` John Hendy
2011-08-08 18:28 ` suvayu ali
2011-08-08 18:53 ` John Hendy
2011-08-08 18:59 ` suvayu ali
2011-08-08 19:48 ` John Hendy
2011-08-08 20:22 ` suvayu ali
2011-08-08 20:31 ` John Hendy
2011-08-08 20:33 ` Nick Dokos
2011-08-08 20:37 ` Nick Dokos
2011-08-08 20:54 ` John Hendy
2011-08-08 21:09 ` Nick Dokos
2011-08-08 21:27 ` John Hendy
2011-08-08 21:30 ` suvayu ali
2011-08-08 22:17 ` Nick Dokos
2011-08-08 21:46 ` suvayu ali
2011-06-15 10:29 BUG: Newest org-mode interferes with desktop save Rainer M Krug
2011-06-15 16:49 ` Eric Schulte
2011-06-15 17:35 ` Nick Dokos
2011-06-15 18:23 ` Rainer M Krug
2011-06-15 18:21 ` Rainer M Krug
2011-06-15 18:31 ` Eric Schulte
2011-06-15 18:59 ` Rainer M Krug
2011-06-15 22:40 ` Nick Dokos
2011-06-16 7:15 ` Rainer M Krug
2011-06-16 7:29 ` Jambunathan K
2011-06-16 8:22 ` Rainer M Krug
2011-05-24 15:54 Passing font size to exported LaTeX table John Hendy
2011-05-24 16:44 ` Sebastien Vauban
2011-05-24 18:57 ` John Hendy
2011-05-24 19:25 ` Nick Dokos
2011-05-24 19:31 ` John Hendy
2011-05-24 19:58 ` Thomas S. Dye
2011-05-24 20:42 ` Nick Dokos
2011-05-24 21:12 ` Nick Dokos
2011-05-24 21:19 ` Nick Dokos
2011-05-25 7:22 ` Thomas S. Dye
2011-05-27 0:58 ` suvayu ali
2011-05-27 6:46 ` Thomas S. Dye
2011-05-27 7:07 ` suvayu ali
2011-05-27 16:17 ` Thomas S. Dye
2011-05-27 16:50 ` Suvayu Ali
2011-05-27 17:37 ` Thomas S. Dye
2011-05-27 18:30 ` Suvayu Ali
2011-05-27 21:25 ` Thomas S. Dye
2011-05-28 7:17 ` Sebastien Vauban
2011-05-28 10:14 ` Suvayu Ali
2011-05-28 15:21 ` Nick Dokos
2011-05-28 18:10 ` Suvayu Ali
2011-06-01 18:50 ` Nick Dokos
2011-06-01 19:08 ` Suvayu Ali
2011-06-10 22:31 ` Suvayu Ali
2011-06-13 1:38 ` suvayu ali
2011-06-13 1:52 ` Nick Dokos
2011-06-13 2:40 ` Suvayu Ali
2011-06-13 3:29 ` Nick Dokos
2011-06-13 3:45 ` Thomas S. Dye
2011-06-13 4:27 ` Nick Dokos
2011-06-13 4:56 ` Suvayu Ali
2011-06-13 5:29 ` Nick Dokos
2011-06-13 6:42 ` Suvayu Ali
2011-05-24 20:06 ` Nick Dokos
2011-05-24 19:42 ` Sebastien Vauban
2010-08-21 19:30 Gnuplot unevenly spaced non-numeric data plot? John Hendy
2010-08-21 20:35 ` Eric S Fraga
2010-08-21 20:41 ` Nick Dokos
2010-08-21 21:11 ` John Hendy
2010-08-21 22:41 ` John Hendy
2010-08-21 23:17 ` Nick Dokos
2010-08-23 14:22 ` John Hendy
2010-08-23 15:16 ` Nick Dokos
[not found] ` <AANLkTi=WTLBL1Giq0GTrjCo-A1s=iP4u1Qxn57cH-xnB@mail.gmail.com>
[not found] ` <AANLkTimSVm=-2o39CQ9wSMT276Dee4Tuj9jLKJH-c+cd@mail.gmail.com>
2010-08-24 2:44 ` [For Worg?] " John Hendy
2010-08-24 5:25 ` suvayu ali
2010-08-24 5:56 ` Nick Dokos
2010-08-25 0:32 ` Eric Schulte
2010-08-25 1:06 ` John Hendy
2010-08-25 1:35 ` Eric Schulte
2010-08-25 18:38 ` John Hendy
2010-08-25 18:52 ` Eric Schulte
[not found] ` <jw.hendy@gmail.com>
2012-03-12 21:13 ` Beamer specific setupfile? John Hendy
2012-03-12 21:48 ` Nick Dokos
2012-03-12 22:09 ` John Hendy
2012-03-12 22:30 ` Nick Dokos
2012-03-12 22:44 ` Nick Dokos
2012-03-13 5:02 ` John Hendy
2012-03-13 5:46 ` Nick Dokos
2012-04-25 8:16 ` Eric Fraga
2012-04-25 8:59 ` Eric Fraga
2012-03-12 23:01 ` Nick Dokos
2012-03-12 21:51 ` Nick Dokos
2012-03-12 22:05 ` Nick Dokos
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