From: "Loris Bennett" <loris.bennett@fu-berlin.de>
To: emacs-orgmode@gnu.org
Subject: Re: org mode R remote code evaluation
Date: Thu, 29 Aug 2013 10:25:00 +0200 [thread overview]
Message-ID: <87d2ownbtv.fsf@hornfels.zedat.fu-berlin.de> (raw)
In-Reply-To: CABxYo6qtGn_as2mS=Nd86OZQLJgBF_hU+1U_4xT2=y2WGdV91A@mail.gmail.com
Johannes Rainer <johannes.rainer@gmail.com> writes:
> dear all,
>
> I have some computation intense R-code that I want to run remotely on my server,
> and, according to the org manual that should be possible with the ":dir"
> parameter. so I went on and tried the following (user/server masked):
>
> #+BEGIN_SRC R :dir /xx@xxx:
> system("hostname")
> #+END_SRC
>
> when I execute it I get the error:
>
> Tramp: Encoding region using function `base64-encode-region'...done
> Tramp: Decoding region into remote file
> /ssh:xx@xxx:/var/folders/ny/6kbb36310wz2kww8y8ctry600000gn/T/R-46345BQs...done
> byte-code: Couldn't write region to
> `/ssh:xx@xxx:/var/folders/ny/6kbb36310wz2kww8y8ctry600000gn/T/R-46345BQs',
> decode using `base64 -d -i >%s' failed
>
> apparently, this temp folder does not exist on the linux server, it is actually
> the temp folder from my local machine.
>
> I get the same error when I try to execute remote shell code, so it's not R
> related.
>
> I also tried to start a ssh session using "M-x ssh" and used the source block
>
> #+BEGIN_SRC R :exports both :session *ssh xxx*
> system("hostname")
> #+END_SRC
>
> on the server it executes the command but it can not write the results:
>
>> xxx
>> Warning message:
> In file.rename(tfile, transfer.file) :
> cannot rename file '/tmp/RtmpsirjGl/file51c8f6ce4ec' to
> '/var/folders/ny/6kbb36310wz2kww8y8ctry600000gn/T/babel-46345zSH/R-46345a4N',
> reason 'No such file or directory'
>>
>
> I am using emacs 24.3 and Org-mode version 8.0.7 (release_8.0.7-384-g6fdc23)
>
> I would be helpful for any suggestions how I could solve this problem.
>
> thanks in advance
The following works for me:
#+BEGIN_SRC R :results output :dir /xxx@xxxxx:
system("hostname")
#+END_SRC
with Emacs 24.2.1 and 8.0.7 (8.0.7-6-g13cb28-elpaplus)
Cheers,
Loris
--
This signature is currently under construction.
next prev parent reply other threads:[~2013-08-29 8:25 UTC|newest]
Thread overview: 18+ messages / expand[flat|nested] mbox.gz Atom feed top
2013-08-29 6:31 org mode R remote code evaluation Johannes Rainer
2013-08-29 8:25 ` Loris Bennett [this message]
2013-08-29 10:42 ` Johannes Rainer
2013-09-23 16:45 ` Alexander Vorobiev
2013-09-24 12:57 ` Michael Albinus
2013-09-24 13:21 ` Alexander Vorobiev
2013-09-24 13:25 ` Michael Albinus
[not found] ` <CAGOCFPUyTaQzVTSwjUOJBfwF8vUzyw=Gn43+bHs8Go8+RUU+nA@mail.gmail.com>
2013-09-24 18:40 ` Michael Albinus
2013-09-25 4:24 ` Alexander Vorobiev
2013-09-25 10:44 ` Michael Albinus
2013-09-25 18:15 ` Eric Schulte
2013-09-25 19:03 ` Michael Albinus
2013-09-25 20:36 ` Alexander Vorobiev
2013-09-26 8:11 ` Michael Albinus
[not found] ` <CAGOCFPXj2-3FruuD=K7=H+SQ308dzkH1P=qP0b17xQuoW9MkPQ@mail.gmail.com>
[not found] ` <87mwmzy16d.fsf@gmx.de>
2013-09-26 17:28 ` Alexander Vorobiev
2013-09-26 17:43 ` Michael Albinus
2013-09-27 11:39 ` Michael Albinus
2013-09-28 11:41 ` Eric Schulte
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