From: Uwe Brauer <oub@mat.ucm.es>
To: emacs-orgmode@gnu.org
Subject: Re: workflow, matlab+latex in org file
Date: Fri, 20 Oct 2017 13:03:15 +0200 [thread overview]
Message-ID: <87d15iozd8.fsf@mat.ucm.es> (raw)
In-Reply-To: m21su43q1g.fsf@VPN-128-237-145-1.LIBRARY.VPN.CMU.EDU
>>> "John" == John Kitchin <jkitchin@andrew.cmu.edu> writes:
This message is from July, but meanwhile I upgraded to Ubuntu 16.04
matlab 2016b which includes the python engine/kernel and finally
I installed the Jupiter matlab kernel via pip, however I tried to follow
your recommendations below:
> You might dig around in ob-octave to see how it works. It should be able
> to Matlab (and on Linux/Mac I believe it might). On Windows, it has been
> broken for a long time due to the lack of a proper shell (maybe that can
> be adapted in win10 though).
> I vaguely recall making that matlab function to try it out on Windows
> some years ago.
> There is a Jupyter Matlab kernel now.
> https://github.com/Calyro/matlab_kernel
> I was able to use this (and installing the kernel, and making sure a
> matlab is on the path):
> #+BEGIN_SRC emacs-lisp
> (add-to-list 'org-src-lang-modes '("matlab" . matlab))
> ;; set default headers for convenience
> (setq org-babel-default-header-args:matlab
> '((:results . "output replace")
> (:session . "matlab")
> (:kernel . "matlab")
> (:exports . "code")
> (:cache . "no")
> (:noweb . "no")
> (:hlines . "no")
> (:tangle . "no")))
> (defalias 'org-babel-execute:matlab 'org-babel-execute:ipython)
> (defalias 'org-babel-prep-session:matlab 'org-babel-prep-session:ipython)
> (defalias 'org-babel-matlab-initiate-session 'org-babel-ipython-initiate-session)
> #+END_SRC
> #+RESULTS:
> : org-babel-matlab-initiate-session
That I obtain
> To enable this:
> #+BEGIN_SRC matlab :results output org drawer
> x = [1, 2, 3, 4, 5];
> fprintf('|%d', x)
> #+END_SRC
Here I obtain the following error:
Debugger entered--Lisp error: (void-function org-babel-execute:matlab)
org-babel-execute:matlab("x = [1, 2, 3, 4, 5];\nfprintf('|%d', x)"
((:colname-names) (:rowname-names) (:result-params "replace" "output"
"drawer") (:result-type . output) (:results . "replace output drawer")
(:exports . "code") (:session . "matlab") (:kernel . "matlab") (:cache
. "no") (:noweb . "no") (:hlines . "no") (:tangle . "no")))
org-babel-execute-src-block(nil ("matlab" "x = [1, 2, 3, 4,
5];\nfprintf('|%d', x)" ((:colname-names) (:rowname-names)
(:result-params "drawer" "output" "replace") (:result-type . output)
(:results . "drawer output replace") (:exports . "code") (:tangle .
"no") (:hlines . "no") (:noweb . "no") (:cache . "no") (:kernel .
"matlab") (:session . "matlab")) "" nil 671 "(ref:%s)"))
org-ctrl-c-ctrl-c(nil) funcall-interactively(org-ctrl-c-ctrl-c nil)
call-interactively(org-ctrl-c-ctrl-c nil nil)
command-execute(org-ctrl-c-ctrl-c)
What is the problem? Which package do I miss, ipython is installed in /usr/local/bin
Thanks
Uwe Brauer
next prev parent reply other threads:[~2017-10-20 11:03 UTC|newest]
Thread overview: 29+ messages / expand[flat|nested] mbox.gz Atom feed top
2016-07-11 12:32 workflow, matlab+latex in org file Uwe Brauer
2016-07-11 14:05 ` John Kitchin
2016-07-11 14:11 ` Uwe Brauer
2016-07-11 15:55 ` John Kitchin
2016-07-11 16:12 ` Uwe Brauer
2017-03-10 16:08 ` Uwe Brauer
2017-03-10 17:51 ` Scott Randby
2017-03-10 21:15 ` Uwe Brauer
2017-03-10 21:56 ` John Kitchin
2017-03-10 22:50 ` Uwe Brauer
2017-03-10 23:17 ` SOLVED (was: workflow, matlab+latex in org file) Uwe Brauer
2017-03-11 23:50 ` workflow, matlab+latex in org file Scott Randby
[not found] ` <5e1e71e3698e415ca51a0b9e3cab5dac@HE1PR01MB1898.eurprd01.prod.exchangelabs.com>
2017-03-10 18:03 ` Eric S Fraga
2017-03-10 21:18 ` Uwe Brauer
2017-03-11 8:04 ` Uwe Brauer
2017-03-11 13:23 ` John Kitchin
2017-03-11 14:16 ` Uwe Brauer
2017-03-11 14:22 ` John Kitchin
2017-03-11 14:54 ` Uwe Brauer
2017-03-11 16:50 ` Uwe Brauer
2017-03-11 16:53 ` John Kitchin
2017-03-12 15:24 ` matlab-shell-run-command (was: workflow, matlab+latex in org file) Uwe Brauer
2017-10-20 11:03 ` Uwe Brauer [this message]
2017-10-20 11:54 ` workflow, matlab+latex in org file Uwe Brauer
[not found] ` <cf7ef1dfa1cf455bbaf63ab5fbdf18e5@HE1PR01MB1898.eurprd01.prod.exchangelabs.com>
2017-03-11 10:37 ` Eric S Fraga
2017-03-11 14:12 ` Uwe Brauer
[not found] <m2eg709w4s.fsf@gmail.com>
2016-07-11 13:55 ` Uwe Brauer
[not found] <c0b96d809e4b41529f81beaa685a9fd0@HE1PR01MB1898.eurprd01.prod.exchangelabs.com>
2016-07-11 16:42 ` Eric S Fraga
2016-07-12 12:44 ` Uwe Brauer
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