* Python execution question
@ 2012-05-06 11:09 Petro
0 siblings, 0 replies; only message in thread
From: Petro @ 2012-05-06 11:09 UTC (permalink / raw)
To: emacs-orgmode
Hi list.
I try to process my data in python. I store outputs from different
scripts in separate txt files and load data using numpy.loadtxt. I want
to change it store outputs in results tables.
So I have this example table
#+TBLNAME: test-table
| 1e212 | 2e1 | 23e3 |
and use it as variable for python source code block below
#+BEGIN_SRC python :var rates=test-table
import numpy as np
for i in range(len(rates)):
rates[i]=map(float,rates[i])
rates2=np.array(rates)
return np.log10(rates2)
#+END_SRC
#+RESULTS:
| 212 | 1.30103 | 4.36172784 |
works OK so far.
And here comes a problem. I want to be able to debug my code in python
session. I use session header argument for it and access session via
org-babel-switch-to-session.
#+BEGIN_SRC python :var rates=test-table :session
import numpy as np
for i in range(len(rates)):
rates[i]=map(float,rates[i])
rates2=np.array(rates)
#+END_SRC
#+RESULTS:
Then it does not work. And inside of session i have the following
output:
__________________________________________
>>> rates=[["1e212", "2e1", "23e3"]]
>>> import numpy as np
for i in range(len(rates)):
rates[i]=map(float,rates[i])
rates2=np.array(rates)
open('/tmp/babel-54890hk/python-54897vP', 'w').write(str(_))
'org_babel_python_eoe'
>>> ... ... File "<stdin>", line 3
rates2=np.array(rates)
^
SyntaxError: invalid syntax
>>> >>> >>> Traceback (most recent call last):
File "<stdin>", line 1, in <module>
NameError: name '_' is not defined
>>> >>> >>> 'org_babel_python_eoe'
>>>
_________________________________________________________
Thank for help in advance.
Petro.
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2012-05-06 11:09 Python execution question Petro
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