From mboxrd@z Thu Jan 1 00:00:00 1970 From: Sharon Kimble Subject: Re: Bibliography woes! Date: Mon, 05 May 2014 15:45:31 +0100 Message-ID: <877g605lo4.fsf@skimble.plus.com> References: <8761lkfn2j.fsf@skimble.plus.com> <53678512.50602@gmail.com> Mime-Version: 1.0 Content-Type: multipart/signed; boundary="=-=-="; micalg=pgp-sha512; protocol="application/pgp-signature" Return-path: Received: from eggs.gnu.org ([2001:4830:134:3::10]:51895) by lists.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1WhK9L-0004Uq-Sp for emacs-orgmode@gnu.org; Mon, 05 May 2014 10:45:52 -0400 Received: from Debian-exim by eggs.gnu.org with spam-scanned (Exim 4.71) (envelope-from ) id 1WhK9G-0007IU-Ue for emacs-orgmode@gnu.org; Mon, 05 May 2014 10:45:47 -0400 Received: from avasout08.plus.net ([212.159.14.20]:53324) by eggs.gnu.org with esmtp (Exim 4.71) (envelope-from ) id 1WhK9G-0007F5-IC for emacs-orgmode@gnu.org; Mon, 05 May 2014 10:45:42 -0400 List-Id: "General discussions about Org-mode." List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , Errors-To: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org Sender: emacs-orgmode-bounces+geo-emacs-orgmode=m.gmane.org@gnu.org To: Leonard Avery Randall Cc: org-mode --=-=-= Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: quoted-printable Leonard Avery Randall writes: > Hi, > > Sharon Kimble wrote: > > But "page 3" of what? "input line 139" of what?=20 >=20=20=20=20=20 > > Page 3 of the PDF and input line 139 of the .tex file.=20 > > It all looks okay to me, except I cant see what the latex warnings > relate to. Any ideas folks please? >=20=20=20=20=20 > > The most likely problem is that you have you have not called bibtex > (or biber) the appropriate number of times and so your references have > not been processed correctly. The way to check this is to run bibtex > or biber (whichever you use, your setup looks like it was designed for > bibtex so bibtex is probably the one you want) on your .tex file and > then call xelatex again, and see if the errors go away. If that is the > problem. You should look at how you have set up org-latex-pdf-process > to make sure that it calls xelatex and bibtex the appropriate number > of times. (another option is to use latexmk, it is really convenient, > but it takes a bit of work to configure it properly). > Still not getting it right. This is in my "setup-testbed.el" =2D-8<---------------cut here---------------start------------->8--- ;; org to latex customisations, -shell-escape needed for minted (setq org-export-dispatch-use-expert-ui t ; non-intrusive export dispatch org-latex-pdf-process ; for regular export '("xelatex -shell-escape -interaction nonstopmode -output-directory %= o %f" "bibtex %b" "xelatex -shell-escape -interaction nonstopmode -output-directory %o %f" "xelatex -shell-escape -interaction nonstopmode -output-directory %o %f" "xelatex -shell-escape -interaction nonstopmode -output-directory %o %f" "xelatex -shell-escape -interaction nonstopmode -output-directory %o %f")) =2D-8<---------------cut here---------------end--------------->8--- and the partial transcript of the output log =2D-8<---------------cut here---------------start------------->8--- LaTeX Warning: Citation '4' on page 3 undefined on input line 135. LaTeX Warning: Citation '5' on page 3 undefined on input line 137. LaTeX Warning: Citation '4' on page 3 undefined on input line 145. LaTeX Warning: Citation '6' on page 3 undefined on input line 154. LaTeX Warning: Citation '7' on page 4 undefined on input line 167. LaTeX Warning: Citation '8' on page 4 undefined on input line 175. LaTeX Warning: Citation '12' on page 4 undefined on input line 204. LaTeX Warning: Citation '7' on page 4 undefined on input line 209. LaTeX Warning: Citation '9' on page 4 undefined on input line 222. LaTeX Warning: Citation '1' on page 5 undefined on input line 259. LaTeX Warning: Citation '3' on page 6 undefined on input line 285. LaTeX Warning: Citation '10' on page 7 undefined on input line 349. LaTeX Warning: Citation '10' on page 7 undefined on input line 400. LaTeX Warning: Citation '13' on page 9 undefined on input line 458. LaTeX Warning: Citation '11' on page 9 undefined on input line 475. LaTeX Warning: Citation '14' on page 9 undefined on input line 495. LaTeX Warning: Citation '14' on page 10 undefined on input line 527. LaTeX Warning: Citation '2' on page 11 undefined on input line 569. LaTeX Warning: Empty bibliography on input line 576. [11] (./uh2014.aux) LaTeX Warning: There were undefined references. Package biblatex Warning: Please (re)run Biber on the file: (biblatex) uh2014 (biblatex) and rerun LaTeX afterwards. =2D-8<---------------cut here---------------end--------------->8--- and in my org-mode file I have these headers =2D-8<---------------cut here---------------start------------->8--- #+LaTeX_HEADER: \usepackage{biblatex} #+LaTeX_HEADER: \usepackage[backend=3Dbiber,style=3Dverbose]{biblatex} #+LaTeX_HEADER: \bibliography{/home/boudiccas/.emacs.d/research/references.= bib} #+LaTeX_HEADER: \bibliography{references} =2D-8<---------------cut here---------------end--------------->8--- I have created the link to the reference file in my $USER/.emacs.d/org/ directory using this command =E2=95=AD=E2=94=80=E2=94=80=E2=94=80=E2=94=80 =E2=94=82ln -s /home/boudiccas/.emacs.d/research/references.bib references.= bib =E2=95=B0=E2=94=80=E2=94=80=E2=94=80=E2=94=80 Any ideas please folks, or some code to try please? Thanks Sharon. =2D-=20 A taste of linux =3D http://www.sharons.org.uk my git repo =3D https://bitbucket.org/boudiccas/dots TGmeds =3D http://www.tgmeds.org.uk Debian testing, Fluxbox 1.3.5, emacs 24.4.50.19 --=-=-= Content-Type: application/pgp-signature; name="signature.asc" -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCgAGBQJTZ6QMAAoJEDaBgBkK+INb3s0P/1ChI1IZF8qee3Vv2lDmEpvJ YBX6n/7JwCHDyXnUnFsIFIomsBaJZBmNVs7YvVL7dyzFMkAS/1cI423/rrmF1lBC PT4dq5fwdQZ1sy6ztIY6ATUKpR0j8oq0mOuhkt4r0RmCzC3bDZo920dpOk9GwLHR Ruuv31uSeVbA0YN98qCrI5nur8kDQlGDU9uMQsoor+euz4zj/V9uS7hsex9ecXDE cNs9g0dXJ/c31OcIfHv4yOLCbu9+pAYkYR90j0MlVpeDBIwuPpFC5pjfHIBfMLm6 raZfX0M86HyNCypac7+BXubJ3fUu19115//dFB4F6A/LdQbU6gnNKhEKBii+amMR iqhOp0lXGHAReNhqNDIDliLLIgI9FOXS/NVjx7CqJgPX2uJgsmU6VpIxaVN/uvQ2 qo6XXh6bx8mfoU5XNzn7JfXX1Ng69n9ASJR47T/KJY8FvESTyJQ06S1+tGbIN/e9 gHBruIv4EYnwfsLcnfI/19maoD3X9OAEqxjpOZ+55BOP59ABVBRDTtzd4+YlWS60 e/jhK0X3ERmFRWLe7jLY0wxgWSk7eOGfiiGq34CNmhohT5+5z6vAJMPXuZnv6yx3 nVyHsVVlVyZhh4zuYKcpFjjyOqf+bKTh8zFjvsaenY/HqXJhX28clRpaKgA9CjVs wVn17TV6l+8JN0tmn6y2 =gfi+ -----END PGP SIGNATURE----- --=-=-=--