From: Eric Schulte <eric.schulte@gmx.com>
To: "Thomas S. Dye" <tsd@tsdye.com>
Cc: emacs-orgmode@gnu.org
Subject: Re: Updating the Babel section of Worg
Date: Sat, 18 Feb 2012 14:53:17 -0700 [thread overview]
Message-ID: <871uprn702.fsf@gmx.com> (raw)
In-Reply-To: <m1mx8rdius.fsf@tsdye.com> (Thomas S. Dye's message of "Thu, 09 Feb 2012 07:20:11 -1000")
tsd@tsdye.com (Thomas S. Dye) writes:
> Hi Eric,
>
> I pushed a draft of the revised LaTeX language section to Worg
> (http://orgmode.org/worg/org-contrib/babel/languages/ob-doc-LaTeX.html).
>
> Please take a look and edit as necessary. Too often I understand
> these things partially!
>
Everything looks great to me. Thanks for the contribution!
>
> If Andreas Leha is reading this it would be good to take a look at my
> description of the ImageMagick facility. I tried to stick closely to
> the sources, but might have strayed.
>
> All the best,
> Tom
>
> Eric Schulte <eric.schulte@gmx.com> writes:
>
>> tsd@tsdye.com (Thomas S. Dye) writes:
>>
>>> Hi Eric,
>>>
>>> I've attached a first draft of a template for review and revision. It
>>> is heavily influenced by John Hendy's terrific gnuplot page. I
>>> believe it incorporates the points in your outline. Feel free to
>>> edit as appropriate.
>>>
>>
>> Looks great to me. I made a small change, and I've just pushed it up to
>> worg and linked to it from the languages page. We can continue to
>> improve this template as needed on worg although I think it is already
>> in very good shape and ready for use.
>>
>> Thanks,
>>
>>>
>>> All the best,
>>> Tom
>>>
>>>
>>>
>>>
>>> Eric Schulte <eric.schulte@gmx.com> writes:
>>>
>>>> Hi Tom,
>>>>
>>>> tsd@tsdye.com (Thomas S. Dye) writes:
>>>>
>>>>> Hi Eric,
>>>>>
>>>>> Yes, this is overdue. I think your plan is a good one.
>>>>>
>>>>> Perhaps a few of the individual use cases could be moved to FIXME,
>>>>> instead? I'm thinking here of Feiming Chen's R setup and some of my
>>>>> contributions when I was experimenting writing LaTeX inside source
>>>>> code blocks. The authors could resurrect these as they see fit.
>>>>>
>>>>
>>>> I don't know what FIXME is, but if there is a way to keep the page in
>>>> the worg git repository but remove it from the exported HTML then that
>>>> sounds ideal.
>>>>
>>>>>
>>>>> Hopefully, others will contribute use examples. My sense from reading
>>>>> the list is there are many interesting ones.
>>>>>
>>>>> I'd like it if Org mode users designed a template for the language
>>>>> specific pages. Currently, these seem to me a mixed bag and it would be
>>>>> good to regularize them.
>>>>
>>>> The below is a modified version of a template which can be found in a
>>>> couple of the existing language tutorials, I think it serves as a good
>>>> starting point.
>>>>
>>>> - Install and Setup
>>>> - Instillation and configuration of software (e.g., the language itself)
>>>> - Configuration of Emacs (e.g., activate language, set command path)
>>>> - Examples
>>>> - Common ways to use the language in an Org-mode document
>>>> - Special cases
>>>> - are there any language-specific header arguments
>>>> - does the language support session evaluation
>>>> - does the language support all result types
>>>> - is the language different from most babel languages
>>>> (e.g., C is compiled before execution, ditaa returns files, etc...)
>>>>
>>>>> It would also be nice to have one for each of the supported languages.
>>>>> There are 11 language specific pages now, which leaves quite a few
>>>>> languages under-documented.
>>>>
>>>> (length org-babel-load-languages) ;; => 27
>>>>
>>>> ls org-contrib/babel/languages/ob-doc-*|wc -l # => 11
>>>>
>>>> It looks like we have at least 16 more to go before we hit full language
>>>> coverage. Perhaps we should use the empty cells in the "documentation"
>>>> column in the languages table at [1] as a sign up space for volunteers
>>>> who would be willing to write a brief tutorial demonstrating usage of
>>>> Org-mode with their favorite language.
>>>>
>>>> Moving forward this is likely something we could request of the
>>>> contributors of new languages.
>>>>
>>>> Also, once the template above is finalized it should be posted on worg
>>>> and linked to through the languages page.
>>>>
>>>>>
>>>>> I'll be happy to work on this as I can.
>>>>>
>>>>
>>>> Great, I don't anticipate having time to put towards this, although I'll
>>>> be happy to help troubleshoot where I can.
>>>>
>>>> Cheers,
>>>>
>>>>>
>>>>> All the best,
>>>>> Tom
>>>>>
>>>>>
>>>>> Eric Schulte <eric.schulte@gmx.com> writes:
>>>>>
>>>>>> Thanks for raising this point. The bulk of the content in the Babel
>>>>>> portion of worg is fairly old, predating the syntax standardization
>>>>>> efforts this fall. I've just pushed some minor updates to the main
>>>>>> babel pages, but updating the language-specific tutorials and the
>>>>>> individual use cases will be a much larger effort.
>>>>>>
>>>>>> I'm not sure how to proceed. One option would be to go through and add
>>>>>> a [uses deprecated syntax] tag to the top of each such page, which could
>>>>>> be removed after the page has been checked and possibly updated to
>>>>>> ensure consistency with the latest syntax.
>>>>>>
>>>>>> Given that the Babel syntax will not be changing significantly moving
>>>>>> forward now would be a good time to do such a review. Ideally this
>>>>>> could be completed before the release of Emacs 24 in a couple of months.
>>>>>>
>>>>>> Any other ideas for update/reorganization or volunteers?
>>>>>>
>>>>>> Cheers,
>>>>>>
>>>>>> tsd@tsdye.com (Thomas S. Dye) writes:
>>>>>>
>>>>>>> Hi Riccardo,
>>>>>>>
>>>>>>> Thanks for the URL. Org mode has evolved since this article was
>>>>>>> written. It should probably be revised or taken off Worg. I've copied
>>>>>>> Eric Schulte, who is better able than me to determine the correct course
>>>>>>> of action here.
>>>>>>>
>>>>>>> In the meantime, an up-to-date description of how Org mode can be used
>>>>>>> to write literate programs has appeared in the Journal of Statistical
>>>>>>> Software. You can find it here: http://www.jstatsoft.org/v46/i03
>>>>>>>
>>>>>>> Perhaps you could use the examples in the JSS article to get started?
>>>>>>> If these don't work for you, or if they raise questions that are difficult
>>>>>>> to answer, please do come back to the list with your queries.
>>>>>>>
>>>>>>> All the best,
>>>>>>> Tom
>>>>>>>
>>>>>>> Riccardo Romoli <ric.romoli@gmail.com> writes:
>>>>>>>
>>>>>>>> Hi, this is the URL:
>>>>>>>>
>>>>>>>> http://orgmode.org/worg/org-contrib/babel/how-to-use-Org-Babel-for-R.html
>>>>>>>>
>>>>>>>> Best
>>>>>>>> R
>>>>>>>>
>>>>>>>> 2012/2/5 Thomas S. Dye <tsd@tsdye.com>
>>>>>>>>
>>>>>>>>> Hi Riccardo,
>>>>>>>>>
>>>>>>>>> This code appears to be outdated. I don't recall this code on the org
>>>>>>>>> site. Could you send a URL?
>>>>>>>>>
>>>>>>>>> All the best,
>>>>>>>>> Tom
>>>>>>>>>
>>>>>>>>> Riccardo Romoli <ric.romoli@gmail.com> writes:
>>>>>>>>>
>>>>>>>>> > Hi, I'm trying to generate some figure with R, into an org session.
>>>>>>>>> Firstly
>>>>>>>>> > I use the code in the org site. The problem is that the code do not
>>>>>>>>> > generate any figure.
>>>>>>>>> >
>>>>>>>>> > This is the code:
>>>>>>>>> >
>>>>>>>>> > #+TITLE:Test
>>>>>>>>> > #+AUTHOR: Your Name
>>>>>>>>> > #+EMAIL: your-email@server.com
>>>>>>>>> > #+BABEL: :session *R* :cache yes :results output graphics :exports
>>>>>>>>> > both :tangle yes
>>>>>>>>> >
>>>>>>>>> > * Example of Org-Babel for R Literate Programming
>>>>>>>>> > ** R text output
>>>>>>>>> > A simple summary.
>>>>>>>>> > #+begin_src R
>>>>>>>>> > x <- rnorm(10)
>>>>>>>>> > summary(x)
>>>>>>>>> > #+end_src
>>>>>>>>> >
>>>>>>>>> > ** R graphics output
>>>>>>>>> > Note we use the object =x= generated in previous code block, thanks to
>>>>>>>>> > the header option =:session *R*=. The output graphics file is
>>>>>>>>> > =a.png=.
>>>>>>>>> >
>>>>>>>>> > #+begin_src R :file a.png
>>>>>>>>> > y <- rnorm(10)
>>>>>>>>> > plot(x, y)
>>>>>>>>> > #+end_src
>>>>>>>>> >
>>>>>>>>> > Same plot with larger dimension:
>>>>>>>>> >
>>>>>>>>> > #+begin_src R :file b.png :width 800 :height 800
>>>>>>>>> > plot(x, y)
>>>>>>>>> > #+end_src
>>>>>>>>> >
>>>>>>>>> >
>>>>>>>>> > Where do I wrong?
>>>>>>>>> >
>>>>>>>>> > Best
>>>>>>>>> > Riccardo
>>>>>>>>> > Hi, I'm trying to generate some figure with R, into an org session.
>>>>>>>>> Firstly I use the code in the org site. The problem is that the code do not
>>>>>>>>> generate any figure. This is the code:
>>>>>>>>> > #+TITLE:Test
>>>>>>>>> > #+AUTHOR: Your Name
>>>>>>>>> > #+EMAIL: mailto:your-email@server.com
>>>>>>>>> > #+BABEL: :session *R* :cache yes :results output graphics :exports both
>>>>>>>>> :tangle yes
>>>>>>>>> >
>>>>>>>>> > * Example of Org-Babel for R Literate Programming
>>>>>>>>> > ** R text output
>>>>>>>>> > A simple summary.
>>>>>>>>> > #+begin_src R
>>>>>>>>> > x <- rnorm(10)
>>>>>>>>> > summary(x)
>>>>>>>>> > #+end_src
>>>>>>>>> >
>>>>>>>>> > ** R graphics output
>>>>>>>>> > Note we use the object =x= generated in previous code block, thanks to
>>>>>>>>> > the header option =:session *R*=. The output graphics file is
>>>>>>>>> > =a.png=.
>>>>>>>>> >
>>>>>>>>> > #+begin_src R :file a.png
>>>>>>>>> > y <- rnorm(10)
>>>>>>>>> > plot(x, y)
>>>>>>>>> > #+end_src
>>>>>>>>> >
>>>>>>>>> > Same plot with larger dimension:
>>>>>>>>> >
>>>>>>>>> > #+begin_src R :file b.png :width 800 :height 800
>>>>>>>>> > plot(x, y)
>>>>>>>>> > #+end_src
>>>>>>>>> > Where do I wrong?BestRiccardo
>>>>>>>>>
>>>>>>>>> --
>>>>>>>>> Thomas S. Dye
>>>>>>>>> http://www.tsdye.com
>>>>>>>>>
>>>>>>>> Hi, this is the URL:http://orgmode.org/worg/org-contrib/babel/how-to-use-Org-Babel-for-R.htmlBestR
>>>>>>>> 2012/2/5 Thomas S. Dye <span dir="ltr"><mailto:tsd@tsdye.com></span>Hi Riccardo,
>>>>>>>>
>>>>>>>>
>>>>>>>> This code appears to be outdated. I don't recall this code on the org
>>>>>>>> site. Could you send a URL?
>>>>>>>>
>>>>>>>> All the best,
>>>>>>>> Tom
>>>>>>>>
>>>>>>>> Riccardo Romoli <mailto:ric.romoli@gmail.com> writes:
>>>>>>>>
>>>>>>>>> Hi, I'm trying to generate some figure with R, into an org session. Firstly
>>>>>>>>> I use the code in the org site. The problem is that the code do not
>>>>>>>>> generate any figure.
>>>>>>>>>
>>>>>>>>> This is the code:
>>>>>>>>>
>>>>>>>>> #+TITLE:Test
>>>>>>>>> #+AUTHOR: Your Name
>>>>>>>>> #+EMAIL: mailto:your-email@server.com
>>>>>>>>> #+BABEL: :session *R* :cache yes :results output graphics :exports
>>>>>>>>> both :tangle yes
>>>>>>>>>
>>>>>>>>> * Example of Org-Babel for R Literate Programming
>>>>>>>>> ** R text output
>>>>>>>>> A simple summary.
>>>>>>>>> #+begin_src R
>>>>>>>>> x <- rnorm(10)
>>>>>>>>> summary(x)
>>>>>>>>> #+end_src
>>>>>>>>>
>>>>>>>>> ** R graphics output
>>>>>>>>> Note we use the object =x= generated in previous code block, thanks to
>>>>>>>>> the header option =:session *R*=. The output graphics file is
>>>>>>>>> =a.png=.
>>>>>>>>>
>>>>>>>>> #+begin_src R :file a.png
>>>>>>>>> y <- rnorm(10)
>>>>>>>>> plot(x, y)
>>>>>>>>> #+end_src
>>>>>>>>>
>>>>>>>>> Same plot with larger dimension:
>>>>>>>>>
>>>>>>>>> #+begin_src R :file b.png :width 800 :height 800
>>>>>>>>> plot(x, y)
>>>>>>>>> #+end_src
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Where do I wrong?
>>>>>>>>>
>>>>>>>>> Best
>>>>>>>>> Riccardo
>>>>>>>>> Hi, I'm trying to generate some figure with R, into an org
>>>>>>>>> session. Firstly I use the code in the org site. The problem is
>>>>>>>>> that the code do not generate any figure. This is the code:
>>>>>>>>> #+TITLE:Test
>>>>>>>>> #+AUTHOR: Your Name
>>>>>>>>> #+EMAIL: mailto:mailto:your-email@server.com
>>>>>>>>> #+BABEL: :session *R* :cache yes :results output graphics :exports both :tangle yes
>>>>>>>>>
>>>>>>>>> * Example of Org-Babel for R Literate Programming
>>>>>>>>> ** R text output
>>>>>>>>> A simple summary.
>>>>>>>>> #+begin_src R
>>>>>>>>> x <- rnorm(10)
>>>>>>>>> summary(x)
>>>>>>>>> #+end_src
>>>>>>>>>
>>>>>>>>> ** R graphics output
>>>>>>>>> Note we use the object =x= generated in previous code block, thanks to
>>>>>>>>> the header option =:session *R*=. The output graphics file is
>>>>>>>>> =a.png=.
>>>>>>>>>
>>>>>>>>> #+begin_src R :file a.png
>>>>>>>>> y <- rnorm(10)
>>>>>>>>> plot(x, y)
>>>>>>>>> #+end_src
>>>>>>>>>
>>>>>>>>> Same plot with larger dimension:
>>>>>>>>>
>>>>>>>>> #+begin_src R :file b.png :width 800 :height 800
>>>>>>>>> plot(x, y)
>>>>>>>>> #+end_src
>>>>>>>>> Where do I wrong?BestRiccardo
>>>>>>>>
>>>>>>>> <span class="HOEnZb">--
>>>>>>>> Thomas S. Dye
>>>>>>>> http://www.tsdye.com
>>>>>>>> </span>
>>>>
>>>>
>>>> Footnotes:
>>>> [1] http://orgmode.org/worg/org-contrib/babel/languages.html
--
Eric Schulte
http://cs.unm.edu/~eschulte/
next prev parent reply other threads:[~2012-02-18 21:53 UTC|newest]
Thread overview: 17+ messages / expand[flat|nested] mbox.gz Atom feed top
2012-02-04 22:52 Generating plot with org-babel-R Riccardo Romoli
2012-02-04 23:37 ` Thomas S. Dye
2012-02-05 11:08 ` Riccardo Romoli
2012-02-05 16:45 ` Thomas S. Dye
2012-02-05 19:29 ` Updating the Babel section of Worg Was: " Eric Schulte
2012-02-06 5:43 ` Thomas S. Dye
2012-02-06 21:20 ` Updating the Babel section of Worg Eric Schulte
2012-02-08 0:01 ` Thomas S. Dye
2012-02-08 1:04 ` Martyn Jago
2012-02-08 14:21 ` Eric Schulte
2012-02-08 14:44 ` Rainer M Krug
2012-02-08 15:27 ` Eric Schulte
2012-02-08 14:14 ` Eric Schulte
2012-02-09 17:20 ` Thomas S. Dye
2012-02-18 21:53 ` Eric Schulte [this message]
2012-02-08 15:41 ` John Hendy
2012-02-06 21:12 ` Generating plot with org-babel-R Riccardo Romoli
Reply instructions:
You may reply publicly to this message via plain-text email
using any one of the following methods:
* Save the following mbox file, import it into your mail client,
and reply-to-all from there: mbox
Avoid top-posting and favor interleaved quoting:
https://en.wikipedia.org/wiki/Posting_style#Interleaved_style
List information: https://www.orgmode.org/
* Reply using the --to, --cc, and --in-reply-to
switches of git-send-email(1):
git send-email \
--in-reply-to=871uprn702.fsf@gmx.com \
--to=eric.schulte@gmx.com \
--cc=emacs-orgmode@gnu.org \
--cc=tsd@tsdye.com \
/path/to/YOUR_REPLY
https://kernel.org/pub/software/scm/git/docs/git-send-email.html
* If your mail client supports setting the In-Reply-To header
via mailto: links, try the mailto: link
Be sure your reply has a Subject: header at the top and a blank line
before the message body.
Code repositories for project(s) associated with this public inbox
https://git.savannah.gnu.org/cgit/emacs/org-mode.git
This is a public inbox, see mirroring instructions
for how to clone and mirror all data and code used for this inbox;
as well as URLs for read-only IMAP folder(s) and NNTP newsgroup(s).